Wall clock time and date at job start Mon Mar 30 2020 03:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47344 * 120.00759 * 2 1 3 5 5 N 1.46901 * 109.47371 * 175.64743 * 4 2 1 6 6 C 1.46847 * 110.99964 * 199.92506 * 5 4 2 7 7 C 1.53033 * 109.52133 * 174.15517 * 6 5 4 8 8 C 1.53121 * 109.27977 * 59.18188 * 7 6 5 9 9 C 1.53119 * 109.15985 * 302.34561 * 8 7 6 10 10 C 1.46843 * 111.00257 * 75.71156 * 5 4 2 11 11 N 1.46902 * 109.47182 * 240.00383 * 2 1 3 12 12 C 1.46902 * 110.99870 * 84.99763 * 11 2 1 13 13 C 1.53000 * 109.46858 * 180.02562 * 12 11 2 14 14 C 1.50697 * 109.47134 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99981 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00441 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99732 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00227 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47490 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47237 * 120.00418 * 18 16 14 21 21 H 1.48504 * 109.47196 * 240.00050 * 18 16 14 22 22 H 1.08995 * 109.47592 * 59.99980 * 1 2 3 23 23 H 1.09004 * 109.46758 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47178 * 299.99201 * 1 2 3 25 25 H 1.09004 * 109.46870 * 295.64190 * 4 2 1 26 26 H 1.09000 * 109.47531 * 55.64099 * 4 2 1 27 27 H 1.09003 * 109.46290 * 294.17210 * 6 5 4 28 28 H 1.09000 * 109.46296 * 54.14279 * 6 5 4 29 29 H 1.09001 * 109.50835 * 299.23707 * 7 6 5 30 30 H 1.09001 * 109.53311 * 179.14068 * 7 6 5 31 31 H 1.08994 * 109.52539 * 182.43719 * 8 7 6 32 32 H 1.08995 * 109.57518 * 62.27856 * 8 7 6 33 33 H 1.09008 * 109.50027 * 297.71323 * 9 8 7 34 34 H 1.09001 * 109.50635 * 177.59524 * 9 8 7 35 35 H 1.09000 * 109.46663 * 305.85851 * 10 5 4 36 36 H 1.09002 * 109.46200 * 65.82943 * 10 5 4 37 37 H 1.00907 * 111.00124 * 321.04389 * 11 2 1 38 38 H 1.08996 * 109.46842 * 300.00028 * 12 11 2 39 39 H 1.08996 * 109.47100 * 60.00270 * 12 11 2 40 40 H 1.08998 * 109.47286 * 300.00409 * 13 12 11 41 41 H 1.09006 * 109.47179 * 60.00147 * 13 12 11 42 42 H 0.97001 * 119.99947 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5053 -0.8131 1.1977 6 6 3.9979 -1.8714 2.0886 7 6 5.5078 -2.0360 1.9011 8 6 6.2043 -0.7100 2.2193 9 6 5.6387 0.3853 1.3110 10 6 4.1250 0.4797 1.5155 11 7 2.0197 -0.6924 -1.1995 12 6 2.0824 0.2228 -2.3469 13 6 2.5950 -0.5329 -3.5745 14 6 2.6588 0.4057 -4.7517 15 1 2.3629 1.4379 -4.6360 16 6 3.0949 -0.0532 -5.9765 17 7 3.4547 -1.3103 -6.1176 18 14 3.1746 1.1105 -7.4356 19 1 2.7195 2.4607 -7.0174 20 1 4.5729 1.1908 -7.9289 21 1 2.2953 0.6052 -8.5204 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.7419 -0.1645 2.1375 26 1 1.6144 -1.7241 1.2890 27 1 3.7877 -1.6019 3.1237 28 1 3.4978 -2.8098 1.8490 29 1 5.7178 -2.3190 0.8696 30 1 5.8762 -2.8110 2.5733 31 1 7.2755 -0.8103 2.0453 32 1 6.0277 -0.4457 3.2619 33 1 5.8507 0.1404 0.2702 34 1 6.1001 1.3405 1.5619 35 1 3.7172 1.2490 0.8597 36 1 3.9142 0.7382 2.5532 37 1 1.4496 -1.4979 -1.4102 38 1 1.0870 0.6164 -2.5524 39 1 2.7588 1.0463 -2.1182 40 1 3.5903 -0.9271 -3.3692 41 1 1.9182 -1.3563 -3.8031 42 1 3.7612 -1.6333 -6.9794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049501799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:30 Heat of formation + Delta-G solvation = -19.390391 kcal Electronic energy + Delta-G solvation = -17834.705393 eV Core-core repulsion = 15234.476399 eV Total energy + Delta-G solvation = -2600.228994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.97735 -36.64394 -33.71641 -32.62062 -30.83817 -30.64589 -27.77026 -26.22058 -23.91641 -23.08056 -22.68398 -20.49878 -20.02475 -19.54958 -16.26714 -16.05257 -15.13262 -14.73754 -14.49176 -14.33229 -14.25752 -13.92232 -13.41797 -13.28051 -12.86501 -12.41624 -12.26954 -12.21738 -11.89716 -11.63175 -11.32977 -11.06566 -11.00581 -10.88635 -10.69432 -10.61524 -10.44429 -10.25173 -10.09096 -9.89043 -9.26032 -9.03727 -8.28014 -7.93114 -7.48068 -5.92689 -3.94547 3.35091 3.42286 3.46427 4.04719 4.49778 4.81237 4.90217 4.95493 5.02594 5.20186 5.34593 5.39134 5.43233 5.48366 5.54924 5.58150 5.65271 5.69725 5.74984 5.84410 5.92927 6.00265 6.02423 6.09348 6.13873 6.28659 6.30136 6.31520 6.51872 6.53300 6.58954 7.12547 7.36098 7.38843 7.68383 7.86688 7.97222 8.15761 8.24080 8.54109 9.13618 9.68708 11.18815 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.005239 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.652907 B = 5343.442291 C = 5972.149792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.071 3.929 5 N -0.511 5.511 6 C 0.059 3.941 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.118 4.118 10 C 0.061 3.939 11 N -0.663 5.663 12 C 0.070 3.930 13 C 0.027 3.973 14 C -0.518 4.518 15 H 0.053 0.947 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.021 0.979 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.020 0.980 37 H 0.331 0.669 38 H 0.009 0.991 39 H 0.054 0.946 40 H 0.026 0.974 41 H 0.011 0.989 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 0.861 18.246 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 H 0.088 0.912 4 C -0.057 4.057 5 N -0.235 5.235 6 C -0.069 4.069 7 C -0.155 4.155 8 C -0.156 4.156 9 C -0.155 4.155 10 C -0.067 4.067 11 N -0.293 5.293 12 C -0.058 4.058 13 C -0.011 4.011 14 C -0.557 4.557 15 H 0.071 0.929 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.148 0.852 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.029 0.971 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.725 0.700 17.802 17.830 hybrid contribution -1.184 0.925 -0.274 1.527 sum -0.459 1.625 17.527 17.609 Atomic orbital electron populations 1.22505 0.97979 1.01859 1.01796 1.21517 0.91211 0.97878 0.91831 0.91195 1.22095 0.87698 1.00248 0.95706 1.61673 1.05178 1.04659 1.51952 1.22054 0.95945 0.95485 0.93374 1.21572 0.94404 0.96827 1.02667 1.21552 0.99552 0.95640 0.98889 1.21576 0.94635 0.98002 1.01332 1.22042 0.95078 0.91837 0.97707 1.60532 1.56033 1.09377 1.03347 1.22117 0.97520 0.95308 0.90873 1.19042 0.97056 0.95127 0.89853 1.21241 1.43470 0.96389 0.94594 0.92883 1.24995 0.95536 0.95044 0.98807 1.69992 1.44765 1.14337 1.24215 0.86570 0.77621 0.81188 0.82801 1.19833 1.21023 1.21107 0.92290 0.92611 0.92948 0.95504 0.91330 0.96133 0.91035 0.90554 0.92193 0.92139 0.92942 0.90379 0.92157 0.90836 0.96177 0.85152 0.97328 0.92776 0.95558 0.97056 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.16 37.16 0.34 -1.98 16 2 C 0.09 1.28 2.60 -67.71 -0.18 1.10 16 3 H 0.07 1.08 6.64 -51.93 -0.34 0.74 16 4 C 0.07 0.93 4.69 -3.82 -0.02 0.91 16 5 N -0.51 -7.15 4.32 -234.67 -1.01 -8.16 16 6 C 0.06 0.72 5.43 -3.84 -0.02 0.70 16 7 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 8 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 9 C -0.12 -1.46 6.09 -26.65 -0.16 -1.62 16 10 C 0.06 0.80 5.29 -3.84 -0.02 0.78 16 11 N -0.66 -12.09 5.99 -106.73 -0.64 -12.73 16 12 C 0.07 1.52 5.42 -3.82 -0.02 1.50 16 13 C 0.03 0.71 5.23 -27.88 -0.15 0.57 16 14 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H 0.06 0.82 7.45 -51.93 -0.39 0.44 16 23 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.03 0.32 8.00 -51.93 -0.42 -0.10 16 26 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.03 6.79 -51.93 -0.35 0.68 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.33 5.96 8.47 -39.29 -0.33 5.62 16 38 H 0.01 0.18 7.44 -51.93 -0.39 -0.20 16 39 H 0.05 1.20 8.05 -51.93 -0.42 0.78 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -30.41 327.36 -10.03 -40.43 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.07 Total: 0.02 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.96 Total: -14.79 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.92 Total: -47.64 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.41 -10.03 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.045 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds