Wall clock time and date at job start Mon Mar 30 2020 03:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47344 * 120.00759 * 2 1 3 5 5 N 1.46901 * 109.47371 * 175.64743 * 4 2 1 6 6 C 1.46847 * 110.99964 * 199.92506 * 5 4 2 7 7 C 1.53033 * 109.52133 * 174.15517 * 6 5 4 8 8 C 1.53121 * 109.27977 * 59.18188 * 7 6 5 9 9 C 1.53119 * 109.15985 * 302.34561 * 8 7 6 10 10 C 1.46843 * 111.00257 * 75.71156 * 5 4 2 11 11 N 1.46902 * 109.47182 * 240.00383 * 2 1 3 12 12 C 1.46902 * 110.99870 * 84.99763 * 11 2 1 13 13 C 1.53000 * 109.46858 * 180.02562 * 12 11 2 14 14 C 1.50697 * 109.47134 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99981 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00441 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99732 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00227 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47490 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47237 * 120.00418 * 18 16 14 21 21 H 1.48504 * 109.47196 * 240.00050 * 18 16 14 22 22 H 1.08995 * 109.47592 * 59.99980 * 1 2 3 23 23 H 1.09004 * 109.46758 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47178 * 299.99201 * 1 2 3 25 25 H 1.09004 * 109.46870 * 295.64190 * 4 2 1 26 26 H 1.09000 * 109.47531 * 55.64099 * 4 2 1 27 27 H 1.09003 * 109.46290 * 294.17210 * 6 5 4 28 28 H 1.09000 * 109.46296 * 54.14279 * 6 5 4 29 29 H 1.09001 * 109.50835 * 299.23707 * 7 6 5 30 30 H 1.09001 * 109.53311 * 179.14068 * 7 6 5 31 31 H 1.08994 * 109.52539 * 182.43719 * 8 7 6 32 32 H 1.08995 * 109.57518 * 62.27856 * 8 7 6 33 33 H 1.09008 * 109.50027 * 297.71323 * 9 8 7 34 34 H 1.09001 * 109.50635 * 177.59524 * 9 8 7 35 35 H 1.09000 * 109.46663 * 305.85851 * 10 5 4 36 36 H 1.09002 * 109.46200 * 65.82943 * 10 5 4 37 37 H 1.00907 * 111.00124 * 321.04389 * 11 2 1 38 38 H 1.08996 * 109.46842 * 300.00028 * 12 11 2 39 39 H 1.08996 * 109.47100 * 60.00270 * 12 11 2 40 40 H 1.08998 * 109.47286 * 300.00409 * 13 12 11 41 41 H 1.09006 * 109.47179 * 60.00147 * 13 12 11 42 42 H 0.97001 * 119.99947 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5053 -0.8131 1.1977 6 6 3.9979 -1.8714 2.0886 7 6 5.5078 -2.0360 1.9011 8 6 6.2043 -0.7100 2.2193 9 6 5.6387 0.3853 1.3110 10 6 4.1250 0.4797 1.5155 11 7 2.0197 -0.6924 -1.1995 12 6 2.0824 0.2228 -2.3469 13 6 2.5950 -0.5329 -3.5745 14 6 2.6588 0.4057 -4.7517 15 1 2.3629 1.4379 -4.6360 16 6 3.0949 -0.0532 -5.9765 17 7 3.4547 -1.3103 -6.1176 18 14 3.1746 1.1105 -7.4356 19 1 2.7195 2.4607 -7.0174 20 1 4.5729 1.1908 -7.9289 21 1 2.2953 0.6052 -8.5204 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.7419 -0.1645 2.1375 26 1 1.6144 -1.7241 1.2890 27 1 3.7877 -1.6019 3.1237 28 1 3.4978 -2.8098 1.8490 29 1 5.7178 -2.3190 0.8696 30 1 5.8762 -2.8110 2.5733 31 1 7.2755 -0.8103 2.0453 32 1 6.0277 -0.4457 3.2619 33 1 5.8507 0.1404 0.2702 34 1 6.1001 1.3405 1.5619 35 1 3.7172 1.2490 0.8597 36 1 3.9142 0.7382 2.5532 37 1 1.4496 -1.4979 -1.4102 38 1 1.0870 0.6164 -2.5524 39 1 2.7588 1.0463 -2.1182 40 1 3.5903 -0.9271 -3.3692 41 1 1.9182 -1.3563 -3.8031 42 1 3.7612 -1.6333 -6.9794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049501799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:30 Heat of formation + Delta-G solvation = -39.260654 kcal Electronic energy + Delta-G solvation = -17835.567032 eV Core-core repulsion = 15234.476399 eV Total energy + Delta-G solvation = -2601.090633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.01344 -37.99338 -35.51060 -34.15043 -32.39192 -31.65187 -29.54770 -27.23701 -25.88880 -24.11135 -23.71677 -22.40366 -21.27212 -20.51367 -18.48700 -17.12216 -16.52981 -16.37463 -15.91918 -15.67419 -15.42105 -15.05860 -14.64104 -14.37417 -14.25004 -14.04203 -13.72687 -13.35356 -13.19328 -12.98624 -12.84698 -12.64187 -12.57490 -12.28764 -12.05478 -11.94837 -11.78547 -11.56543 -11.34967 -11.18929 -11.17864 -11.03916 -10.55253 -9.00967 -8.90303 -8.18473 -6.29899 1.40000 1.40939 1.54172 2.41528 3.04597 3.14657 3.49345 3.91337 3.97265 4.06262 4.15037 4.28992 4.37312 4.44362 4.53703 4.56787 4.60421 4.68386 4.69293 4.73503 4.77935 4.91762 4.92260 4.99563 5.09809 5.11659 5.12852 5.14748 5.27563 5.29285 5.37524 5.48250 5.55313 5.74366 5.83576 6.20855 6.31494 6.40924 6.48518 6.74751 6.88739 7.39240 8.93994 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.005239 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.652907 B = 5343.442291 C = 5972.149792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 H 0.061 0.939 4 C 0.077 3.923 5 N -0.539 5.539 6 C 0.060 3.940 7 C -0.117 4.117 8 C -0.114 4.114 9 C -0.118 4.118 10 C 0.063 3.937 11 N -0.670 5.670 12 C 0.093 3.907 13 C 0.036 3.964 14 C -0.542 4.542 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.276 1.276 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.332 0.668 38 H 0.012 0.988 39 H 0.047 0.953 40 H -0.010 1.010 41 H -0.012 1.012 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 1.817 19.521 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 H 0.079 0.921 4 C -0.052 4.052 5 N -0.263 5.263 6 C -0.067 4.067 7 C -0.154 4.154 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.065 4.065 11 N -0.300 5.300 12 C -0.036 4.036 13 C -0.002 4.002 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.150 0.850 38 H 0.030 0.970 39 H 0.065 0.935 40 H 0.009 0.991 41 H 0.007 0.993 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.261 1.660 19.102 19.176 hybrid contribution -1.027 0.586 -0.632 1.341 sum -0.765 2.246 18.470 18.622 Atomic orbital electron populations 1.22401 0.96118 1.02543 1.02265 1.21605 0.92694 0.97254 0.90798 0.92072 1.22032 0.87344 1.00558 0.95234 1.61638 1.05828 1.05489 1.53377 1.22071 0.96036 0.94832 0.93804 1.21574 0.94466 0.97876 1.01529 1.21531 0.99761 0.94569 0.99310 1.21566 0.94764 0.99422 0.99818 1.22006 0.95130 0.91159 0.98185 1.60442 1.57136 1.09120 1.03274 1.21674 0.97029 0.94765 0.90180 1.18872 0.94655 0.94645 0.91990 1.21649 1.43809 0.96925 0.95700 0.92400 1.25977 0.94770 0.96842 1.02158 1.70129 1.45384 1.16446 1.25305 0.85378 0.77913 0.79072 0.78538 1.18611 1.20340 1.20203 0.93758 0.91835 0.90482 0.93430 0.90811 0.94520 0.91199 0.93285 0.90095 0.91456 0.91216 0.93631 0.90694 0.92428 0.94475 0.85048 0.96968 0.93461 0.99115 0.99321 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 9.16 71.98 0.66 -3.47 16 2 C 0.09 2.47 2.60 44.91 0.12 2.59 16 3 H 0.06 1.85 6.64 -2.39 -0.02 1.84 16 4 C 0.08 1.87 4.69 86.30 0.41 2.27 16 5 N -0.54 -14.60 4.32 -896.37 -3.88 -18.48 16 6 C 0.06 1.37 5.43 86.32 0.47 1.84 16 7 C -0.12 -2.57 6.09 30.65 0.19 -2.38 16 8 C -0.11 -2.32 6.00 30.67 0.18 -2.14 16 9 C -0.12 -2.87 6.09 30.65 0.19 -2.68 16 10 C 0.06 1.59 5.29 86.33 0.46 2.04 16 11 N -0.67 -24.73 5.99 -491.58 -2.94 -27.67 16 12 C 0.09 4.10 5.42 86.30 0.47 4.57 16 13 C 0.04 2.00 5.23 29.85 0.16 2.16 16 14 C -0.54 -32.08 9.11 25.60 0.23 -31.85 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 16 C 0.00 0.01 5.46 84.65 0.46 0.48 16 17 N -0.93 -58.52 13.29 21.45 0.28 -58.23 16 18 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H 0.04 1.18 7.45 -2.39 -0.02 1.16 16 23 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 0.98 8.00 -2.39 -0.02 0.97 16 26 H 0.07 1.72 7.79 -2.39 -0.02 1.70 16 27 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 1.59 7.93 -2.39 -0.02 1.57 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.60 6.79 -2.39 -0.02 1.59 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.33 12.10 8.47 -89.69 -0.76 11.35 16 38 H 0.01 0.53 7.44 -2.39 -0.02 0.51 16 39 H 0.05 2.14 8.05 -2.39 -0.02 2.12 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -66.28 327.36 -0.33 -66.61 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.19 Total: 16.95 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 3.98 Total: -26.57 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.54 Total: -104.38 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.28 -0.33 -66.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.350 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds