Wall clock time and date at job start Mon Mar 30 2020 03:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46845 * 110.99863 * 294.20589 * 5 4 2 7 7 C 1.53035 * 109.52480 * 174.16803 * 6 5 4 8 8 C 1.53119 * 109.27990 * 59.17570 * 7 6 5 9 9 C 1.53115 * 109.16243 * 302.34852 * 8 7 6 10 10 C 1.46850 * 110.99602 * 170.00121 * 5 4 2 11 11 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 12 12 C 1.46894 * 111.00220 * 274.99988 * 11 2 1 13 13 C 1.53001 * 109.47508 * 179.97438 * 12 11 2 14 14 C 1.50697 * 109.47582 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99614 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00237 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00021 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47310 * 59.99816 * 18 16 14 20 20 H 1.48499 * 109.47083 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47062 * 299.99773 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 26 26 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 27 27 H 1.09005 * 109.46286 * 294.18079 * 6 5 4 28 28 H 1.08997 * 109.46422 * 54.14867 * 6 5 4 29 29 H 1.09003 * 109.49771 * 299.24069 * 7 6 5 30 30 H 1.08995 * 109.50835 * 179.12362 * 7 6 5 31 31 H 1.09002 * 109.51880 * 182.44327 * 8 7 6 32 32 H 1.08997 * 109.52175 * 62.25694 * 8 7 6 33 33 H 1.09003 * 109.50692 * 297.71558 * 9 8 7 34 34 H 1.09001 * 109.50489 * 177.59542 * 9 8 7 35 35 H 1.08997 * 109.46114 * 305.84939 * 10 5 4 36 36 H 1.09001 * 109.46691 * 65.81912 * 10 5 4 37 37 H 1.00900 * 110.99934 * 38.95495 * 11 2 1 38 38 H 1.08998 * 109.47346 * 299.99916 * 12 11 2 39 39 H 1.09007 * 109.47035 * 60.00148 * 12 11 2 40 40 H 1.08998 * 109.46853 * 300.00345 * 13 12 11 41 41 H 1.09007 * 109.46934 * 59.99579 * 13 12 11 42 42 H 0.97005 * 120.00338 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.1305 0.4993 -1.2659 7 6 5.6404 0.3642 -1.0561 8 6 6.2200 -0.5568 -2.1333 9 6 5.5168 -1.9152 -2.0646 10 6 4.0105 -1.7140 -2.2452 11 7 2.0197 -0.6925 1.1994 12 6 2.0825 0.2225 2.3468 13 6 2.5951 -0.5332 3.5745 14 6 2.6589 0.4053 4.7518 15 1 2.3630 1.4376 4.6361 16 6 3.0951 -0.0537 5.9765 17 7 3.4549 -1.3108 6.1175 18 14 3.1735 1.1095 7.4360 19 1 1.8170 1.6448 7.7158 20 1 3.6712 0.3760 8.6274 21 1 4.0943 2.2323 7.1251 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.6053 -1.7197 -1.2952 26 1 1.7516 -0.1583 -2.1370 27 1 3.9376 0.9369 -2.2454 28 1 3.7125 1.1431 -0.4920 29 1 5.8343 -0.0606 -0.0712 30 1 6.1071 1.3466 -1.1276 31 1 7.2882 -0.6905 -1.9619 32 1 6.0606 -0.1133 -3.1161 33 1 5.7088 -2.3759 -1.0955 34 1 5.8952 -2.5614 -2.8567 35 1 3.5053 -2.6778 -2.1825 36 1 3.8182 -1.2661 -3.2201 37 1 1.4496 -1.4979 1.4100 38 1 2.7589 1.0461 2.1182 39 1 1.0870 0.6162 2.5525 40 1 1.9184 -1.3566 3.8029 41 1 3.5904 -0.9273 3.3690 42 1 3.7614 -1.6339 6.9792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049501801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:32 Heat of formation + Delta-G solvation = -18.888218 kcal Electronic energy + Delta-G solvation = -17873.146161 eV Core-core repulsion = 15272.938943 eV Total energy + Delta-G solvation = -2600.207218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.00484 -36.64388 -33.71990 -32.61283 -30.84348 -30.62552 -27.78207 -26.21238 -23.93228 -23.11555 -22.66636 -20.51068 -20.00888 -19.50975 -16.26751 -16.07728 -15.10369 -14.76345 -14.51788 -14.33691 -14.26852 -13.89008 -13.43628 -13.27040 -12.82970 -12.41733 -12.27573 -12.20297 -11.90004 -11.69446 -11.29178 -11.05775 -11.01019 -10.86993 -10.72971 -10.60205 -10.47406 -10.24141 -10.04154 -9.88406 -9.26136 -9.06857 -8.27834 -7.93068 -7.50340 -5.92668 -3.94829 3.37231 3.41454 3.43851 4.05922 4.49424 4.80682 4.90798 4.95772 5.05053 5.17950 5.34678 5.38057 5.43001 5.48561 5.55334 5.58922 5.65896 5.70313 5.77737 5.83865 5.93799 6.00365 6.03540 6.10618 6.13233 6.28875 6.30400 6.33225 6.50237 6.54897 6.57612 7.11124 7.36397 7.39905 7.66943 7.85595 7.96260 8.14282 8.23036 8.53333 9.12831 9.68312 11.18712 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.005292 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.385355 B = 5289.661815 C = 5939.228678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.071 0.929 4 C 0.072 3.928 5 N -0.511 5.511 6 C 0.061 3.939 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.116 4.116 10 C 0.058 3.942 11 N -0.664 5.664 12 C 0.070 3.930 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.021 0.979 37 H 0.332 0.668 38 H 0.053 0.947 39 H 0.009 0.991 40 H 0.011 0.989 41 H 0.026 0.974 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 1.085 -18.038 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.057 4.057 5 N -0.234 5.234 6 C -0.066 4.066 7 C -0.155 4.155 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.070 4.070 11 N -0.293 5.293 12 C -0.059 4.059 13 C -0.010 4.010 14 C -0.559 4.559 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.150 0.850 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.044 0.956 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.740 0.832 -17.614 17.649 hybrid contribution -1.183 1.088 0.304 1.635 sum -0.443 1.920 -17.310 17.422 Atomic orbital electron populations 1.22500 0.97884 1.01914 1.01810 1.21558 0.91427 0.97848 0.91854 0.91115 1.22087 0.87818 1.00209 0.95593 1.61703 1.04645 1.11119 1.45976 1.22035 0.95014 0.90589 0.99003 1.21571 0.94631 0.99084 1.00242 1.21559 0.99475 0.96022 0.98600 1.21568 0.94373 0.97036 1.02437 1.22055 0.95907 0.97161 0.91918 1.60539 1.56089 1.09386 1.03314 1.22127 0.97542 0.95299 0.90911 1.19029 0.97053 0.95111 0.89797 1.21163 1.43771 0.96329 0.94638 0.92998 1.24986 0.95502 0.95041 0.98777 1.69967 1.44552 1.14336 1.24426 0.86684 0.78313 0.81001 0.82126 1.20378 1.21307 1.20274 0.92556 0.92279 0.92931 0.91188 0.95765 0.96310 0.90471 0.90334 0.92138 0.92146 0.92948 0.90649 0.92216 0.91150 0.96076 0.85008 0.92816 0.97289 0.97044 0.95562 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.16 37.16 0.34 -1.97 16 2 C 0.08 1.23 2.37 -67.71 -0.16 1.07 16 3 H 0.07 1.08 6.32 -51.93 -0.33 0.75 16 4 C 0.07 0.94 4.66 -3.82 -0.02 0.92 16 5 N -0.51 -7.18 4.38 -234.67 -1.03 -8.20 16 6 C 0.06 0.83 5.29 -3.84 -0.02 0.81 16 7 C -0.12 -1.50 6.09 -26.65 -0.16 -1.67 16 8 C -0.12 -1.32 6.00 -26.61 -0.16 -1.48 16 9 C -0.12 -1.33 6.09 -26.65 -0.16 -1.49 16 10 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 11 N -0.66 -12.02 5.97 -106.73 -0.64 -12.66 16 12 C 0.07 1.49 5.42 -3.83 -0.02 1.47 16 13 C 0.03 0.73 5.23 -27.88 -0.15 0.59 16 14 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.43 13.29 55.43 0.74 -26.70 16 18 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 23 H 0.06 0.82 7.45 -51.93 -0.39 0.43 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 26 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 1.14 6.32 -51.93 -0.33 0.82 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.33 5.96 8.47 -39.29 -0.33 5.63 16 38 H 0.05 1.17 8.06 -51.93 -0.42 0.76 16 39 H 0.01 0.19 7.44 -51.93 -0.39 -0.20 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -30.21 326.77 -10.01 -40.22 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.05 Total: 0.25 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.94 Total: -14.84 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.93 Total: -47.56 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.21 -10.01 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.334 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds