Wall clock time and date at job start Mon Mar 30 2020 03:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46845 * 110.99863 * 294.20589 * 5 4 2 7 7 C 1.53035 * 109.52480 * 174.16803 * 6 5 4 8 8 C 1.53119 * 109.27990 * 59.17570 * 7 6 5 9 9 C 1.53115 * 109.16243 * 302.34852 * 8 7 6 10 10 C 1.46850 * 110.99602 * 170.00121 * 5 4 2 11 11 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 12 12 C 1.46894 * 111.00220 * 274.99988 * 11 2 1 13 13 C 1.53001 * 109.47508 * 179.97438 * 12 11 2 14 14 C 1.50697 * 109.47582 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99614 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00237 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00021 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47310 * 59.99816 * 18 16 14 20 20 H 1.48499 * 109.47083 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47062 * 299.99773 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 26 26 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 27 27 H 1.09005 * 109.46286 * 294.18079 * 6 5 4 28 28 H 1.08997 * 109.46422 * 54.14867 * 6 5 4 29 29 H 1.09003 * 109.49771 * 299.24069 * 7 6 5 30 30 H 1.08995 * 109.50835 * 179.12362 * 7 6 5 31 31 H 1.09002 * 109.51880 * 182.44327 * 8 7 6 32 32 H 1.08997 * 109.52175 * 62.25694 * 8 7 6 33 33 H 1.09003 * 109.50692 * 297.71558 * 9 8 7 34 34 H 1.09001 * 109.50489 * 177.59542 * 9 8 7 35 35 H 1.08997 * 109.46114 * 305.84939 * 10 5 4 36 36 H 1.09001 * 109.46691 * 65.81912 * 10 5 4 37 37 H 1.00900 * 110.99934 * 38.95495 * 11 2 1 38 38 H 1.08998 * 109.47346 * 299.99916 * 12 11 2 39 39 H 1.09007 * 109.47035 * 60.00148 * 12 11 2 40 40 H 1.08998 * 109.46853 * 300.00345 * 13 12 11 41 41 H 1.09007 * 109.46934 * 59.99579 * 13 12 11 42 42 H 0.97005 * 120.00338 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.1305 0.4993 -1.2659 7 6 5.6404 0.3642 -1.0561 8 6 6.2200 -0.5568 -2.1333 9 6 5.5168 -1.9152 -2.0646 10 6 4.0105 -1.7140 -2.2452 11 7 2.0197 -0.6925 1.1994 12 6 2.0825 0.2225 2.3468 13 6 2.5951 -0.5332 3.5745 14 6 2.6589 0.4053 4.7518 15 1 2.3630 1.4376 4.6361 16 6 3.0951 -0.0537 5.9765 17 7 3.4549 -1.3108 6.1175 18 14 3.1735 1.1095 7.4360 19 1 1.8170 1.6448 7.7158 20 1 3.6712 0.3760 8.6274 21 1 4.0943 2.2323 7.1251 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.6053 -1.7197 -1.2952 26 1 1.7516 -0.1583 -2.1370 27 1 3.9376 0.9369 -2.2454 28 1 3.7125 1.1431 -0.4920 29 1 5.8343 -0.0606 -0.0712 30 1 6.1071 1.3466 -1.1276 31 1 7.2882 -0.6905 -1.9619 32 1 6.0606 -0.1133 -3.1161 33 1 5.7088 -2.3759 -1.0955 34 1 5.8952 -2.5614 -2.8567 35 1 3.5053 -2.6778 -2.1825 36 1 3.8182 -1.2661 -3.2201 37 1 1.4496 -1.4979 1.4100 38 1 2.7589 1.0461 2.1182 39 1 1.0870 0.6162 2.5525 40 1 1.9184 -1.3566 3.8029 41 1 3.5904 -0.9273 3.3690 42 1 3.7614 -1.6339 6.9792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049501801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:32 Heat of formation + Delta-G solvation = -38.649939 kcal Electronic energy + Delta-G solvation = -17874.003093 eV Core-core repulsion = 15272.938943 eV Total energy + Delta-G solvation = -2601.064151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05464 -37.98316 -35.51314 -34.14772 -32.39001 -31.64417 -29.55315 -27.23277 -25.89095 -24.18030 -23.69656 -22.40906 -21.23258 -20.50036 -18.47845 -17.15905 -16.53382 -16.36172 -15.90092 -15.74168 -15.41605 -15.02768 -14.67316 -14.35214 -14.25448 -14.04001 -13.70234 -13.36850 -13.19153 -12.98953 -12.80682 -12.70411 -12.56997 -12.29589 -12.04889 -11.94370 -11.80695 -11.55960 -11.36027 -11.19947 -11.17953 -11.00600 -10.54059 -8.99857 -8.93473 -8.17936 -6.29624 1.40117 1.43805 1.51700 2.41777 3.04739 3.15020 3.48862 3.89643 3.97553 4.07163 4.13826 4.26741 4.37149 4.42506 4.54150 4.56550 4.60400 4.67909 4.69865 4.73664 4.79248 4.90626 4.92249 5.00536 5.09538 5.11677 5.12712 5.14534 5.26941 5.29366 5.38142 5.47904 5.55215 5.74219 5.83498 6.20696 6.30783 6.40615 6.47754 6.73331 6.88559 7.39416 8.94072 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.005292 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.385355 B = 5289.661815 C = 5939.228678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 H 0.063 0.937 4 C 0.077 3.923 5 N -0.537 5.537 6 C 0.064 3.936 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.116 4.116 10 C 0.058 3.942 11 N -0.670 5.670 12 C 0.092 3.908 13 C 0.037 3.963 14 C -0.545 4.545 15 H 0.058 0.942 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.267 1.267 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.333 0.667 38 H 0.048 0.952 39 H 0.012 0.988 40 H -0.012 1.012 41 H -0.010 1.010 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 2.103 -19.335 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.026 4.026 3 H 0.081 0.919 4 C -0.051 4.051 5 N -0.262 5.262 6 C -0.064 4.064 7 C -0.156 4.156 8 C -0.152 4.152 9 C -0.154 4.154 10 C -0.069 4.069 11 N -0.300 5.300 12 C -0.037 4.037 13 C -0.001 4.001 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.192 1.192 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.006 0.994 41 H 0.009 0.991 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.283 1.856 -18.938 19.031 hybrid contribution -1.030 0.730 0.664 1.427 sum -0.747 2.586 -18.274 18.471 Atomic orbital electron populations 1.22398 0.96056 1.02576 1.02282 1.21639 0.92876 0.97290 0.90772 0.91856 1.22030 0.87432 1.00520 0.95159 1.61676 1.05294 1.11671 1.47551 1.21970 0.95063 0.90293 0.99051 1.21559 0.94785 1.00014 0.99223 1.21535 0.99704 0.95376 0.98556 1.21573 0.94386 0.97510 1.01894 1.22088 0.96045 0.96900 0.91913 1.60445 1.57166 1.09120 1.03252 1.21682 0.97065 0.94765 0.90174 1.18861 0.94643 0.94627 0.91968 1.21594 1.44045 0.96941 0.95726 0.92370 1.25971 0.94742 0.96831 1.02141 1.70112 1.45226 1.16460 1.25415 0.85490 0.78945 0.78667 0.77866 1.19092 1.20726 1.19211 0.91817 0.93715 0.90488 0.90698 0.93732 0.94699 0.92497 0.93638 0.90965 0.91424 0.91291 0.93112 0.89972 0.90943 0.94595 0.84958 0.93392 0.96943 0.99358 0.99126 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 9.16 71.98 0.66 -3.45 16 2 C 0.08 2.39 2.37 44.92 0.11 2.50 16 3 H 0.06 1.90 6.32 -2.39 -0.02 1.88 16 4 C 0.08 1.88 4.66 86.30 0.40 2.28 16 5 N -0.54 -14.61 4.38 -896.35 -3.93 -18.54 16 6 C 0.06 1.68 5.29 86.33 0.46 2.14 16 7 C -0.12 -2.99 6.09 30.65 0.19 -2.81 16 8 C -0.11 -2.35 6.00 30.67 0.18 -2.17 16 9 C -0.12 -2.50 6.09 30.65 0.19 -2.31 16 10 C 0.06 1.30 5.46 86.33 0.47 1.77 16 11 N -0.67 -24.59 5.97 -491.58 -2.94 -27.53 16 12 C 0.09 4.06 5.42 86.30 0.47 4.52 16 13 C 0.04 2.03 5.23 29.85 0.16 2.19 16 14 C -0.54 -32.12 9.11 25.60 0.23 -31.88 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.93 -58.46 13.29 21.44 0.28 -58.17 16 18 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 23 H 0.04 1.19 7.45 -2.39 -0.02 1.17 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.76 7.99 -2.39 -0.02 1.74 16 26 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 27 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.06 1.70 6.32 -2.39 -0.02 1.68 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.57 8.02 -2.39 -0.02 1.55 16 36 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.33 12.11 8.47 -89.69 -0.76 11.35 16 38 H 0.05 2.15 8.06 -2.39 -0.02 2.13 16 39 H 0.01 0.54 7.44 -2.38 -0.02 0.52 16 40 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 42 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -65.92 326.77 -0.39 -66.30 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.19 Total: 17.38 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 3.97 Total: -26.70 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -6.58 Total: -104.24 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.92 -0.39 -66.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.655 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds