Wall clock time and date at job start Mon Mar 30 2020 03:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46903 * 109.46823 * 2 1 4 4 C 1.48556 * 111.00051 * 290.12519 * 3 2 1 5 5 C 1.54375 * 104.59344 * 200.95769 * 4 3 2 6 6 C 1.54262 * 105.06151 * 23.85777 * 5 4 3 7 7 H 1.09002 * 110.32521 * 241.10068 * 6 5 4 8 8 C 1.53001 * 110.32554 * 118.99330 * 6 5 4 9 9 N 1.46898 * 109.46907 * 67.82960 * 8 6 5 10 10 C 1.46897 * 111.00049 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47429 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47338 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47113 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00234 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00067 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99674 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00239 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47050 * 89.99864 * 17 15 13 19 19 H 1.48504 * 109.47251 * 209.99757 * 17 15 13 20 20 H 1.48495 * 109.47202 * 329.99883 * 17 15 13 21 21 C 1.48821 * 110.96694 * 174.70681 * 3 2 1 22 22 H 1.09001 * 109.46387 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46670 * 299.99542 * 1 2 3 24 24 H 1.08999 * 109.47188 * 60.00105 * 1 2 3 25 25 H 1.09001 * 109.47116 * 240.00625 * 2 1 3 26 26 H 1.08996 * 109.47210 * 120.00421 * 2 1 3 27 27 H 1.09009 * 110.40917 * 82.18820 * 4 3 2 28 28 H 1.08990 * 110.41815 * 319.74464 * 4 3 2 29 29 H 1.08997 * 110.33138 * 264.96030 * 5 4 3 30 30 H 1.09004 * 110.40992 * 142.79504 * 5 4 3 31 31 H 1.08995 * 109.47302 * 187.82663 * 8 6 5 32 32 H 1.09003 * 109.47210 * 307.83159 * 8 6 5 33 33 H 1.00897 * 111.00437 * 56.04440 * 9 8 6 34 34 H 1.09000 * 109.47154 * 300.00242 * 10 9 8 35 35 H 1.09007 * 109.46885 * 60.00281 * 10 9 8 36 36 H 1.09000 * 109.47183 * 300.00264 * 11 10 9 37 37 H 1.08997 * 109.47226 * 60.00033 * 11 10 9 38 38 H 1.09000 * 109.47034 * 300.00153 * 12 11 10 39 39 H 1.08997 * 109.47089 * 60.00308 * 12 11 10 40 40 H 0.97004 * 119.99671 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.45345 * 40.32853 * 21 3 2 42 42 H 1.09001 * 110.49959 * 277.79615 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7472 2.0460 -1.3022 5 6 2.7452 3.2225 -1.3576 6 6 3.8978 2.8151 -0.4168 7 1 3.9902 3.5302 0.4007 8 6 5.2124 2.7258 -1.1945 9 7 5.6153 4.0693 -1.6310 10 6 6.8767 4.0226 -2.3823 11 6 7.2627 5.4370 -2.8196 12 6 8.5762 5.3882 -3.6026 13 6 8.9567 6.7815 -4.0328 14 1 8.3246 7.6181 -3.7740 15 6 10.1111 6.9881 -4.7576 16 7 10.8806 5.9693 -5.0732 17 14 10.5824 8.7151 -5.2915 18 1 11.4238 9.3452 -4.2425 19 1 11.3448 8.6491 -6.5642 20 1 9.3533 9.5239 -5.4921 21 6 3.5018 1.4259 0.1282 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.7221 2.4154 -1.3339 28 1 1.9286 1.3546 -2.1249 29 1 2.2719 4.1377 -1.0020 30 1 3.1160 3.3590 -2.3735 31 1 5.9864 2.3049 -0.5528 32 1 5.0759 2.0862 -2.0666 33 1 5.6857 4.6987 -0.8456 34 1 7.6621 3.6108 -1.7484 35 1 6.7522 3.3918 -3.2625 36 1 6.4772 5.8483 -3.4536 37 1 7.3870 6.0681 -1.9396 38 1 9.3619 4.9767 -2.9689 39 1 8.4514 4.7573 -4.4826 40 1 11.6931 6.1147 -5.5829 41 1 3.9579 0.6382 -0.4714 42 1 3.7974 1.3292 1.1729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:46 Heat of formation + Delta-G solvation = -41.735200 kcal Electronic energy + Delta-G solvation = -16869.191094 eV Core-core repulsion = 14267.993156 eV Total energy + Delta-G solvation = -2601.197938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21171 -37.74580 -35.74196 -34.44555 -32.78725 -30.27626 -30.04168 -27.94938 -25.31154 -23.87565 -23.64458 -22.09424 -21.66652 -20.64672 -18.48081 -17.30457 -16.70622 -16.58647 -16.53851 -15.70741 -15.51958 -15.27532 -14.82283 -14.33665 -14.16267 -13.88388 -13.51555 -13.41089 -13.25749 -12.90404 -12.72999 -12.49644 -12.40280 -12.29066 -12.22315 -12.04473 -11.82150 -11.67236 -11.46115 -11.40109 -11.35031 -11.04217 -10.55776 -9.47169 -9.35474 -8.20653 -6.31747 1.39932 1.41552 1.52959 2.40869 2.96726 3.12401 3.24510 3.76970 3.83578 3.93738 4.20168 4.23331 4.29614 4.34565 4.38164 4.54143 4.60338 4.61760 4.66891 4.71029 4.73381 4.76605 4.95758 4.97161 4.99663 5.08054 5.09457 5.14645 5.24429 5.28798 5.33550 5.40726 5.51920 5.74701 5.85524 5.88483 6.05674 6.10078 6.26839 6.49746 6.85343 7.37545 8.91363 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.074126 B = 0.002962 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.645758 B = 9450.387482 C = 9586.532499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 N -0.522 5.522 4 C 0.033 3.967 5 C -0.109 4.109 6 C -0.082 4.082 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.688 5.688 10 C 0.072 3.928 11 C -0.091 4.091 12 C 0.024 3.976 13 C -0.543 4.543 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.039 3.961 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.063 0.937 33 H 0.344 0.656 34 H 0.022 0.978 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.051 0.949 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.045 0.955 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.853 -10.915 11.053 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 N -0.246 5.246 4 C -0.094 4.094 5 C -0.147 4.147 6 C -0.102 4.102 7 H 0.099 0.901 8 C -0.060 4.060 9 N -0.319 5.319 10 C -0.057 4.057 11 C -0.129 4.129 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.089 4.089 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.385 -10.732 10.849 24.671 hybrid contribution 1.742 0.019 -0.499 1.812 sum -17.643 -10.714 10.351 23.091 Atomic orbital electron populations 1.21716 0.93933 1.02248 1.02149 1.22310 0.97088 0.88805 1.01035 1.65513 1.11277 1.16483 1.31363 1.23148 1.00312 0.95890 0.90100 1.22221 0.94788 0.97859 0.99857 1.21810 0.93757 0.96981 0.97627 0.90146 1.22011 0.95755 0.90228 0.98030 1.60446 1.31996 1.10344 1.29162 1.21816 0.89356 0.97335 0.97163 1.21364 0.97016 0.95438 0.99130 1.18980 0.92740 0.95577 0.94035 1.21708 1.07458 0.94622 1.34298 0.92201 1.26020 0.96442 1.01558 0.96040 1.70104 1.14592 1.32624 1.40183 0.85421 0.78531 0.79197 0.77745 1.19661 1.20688 1.18744 1.23152 0.88154 0.96088 1.01512 0.91066 0.92264 0.93006 0.94826 0.90279 0.89783 0.94144 0.91284 0.91420 0.95029 0.91825 0.83739 0.95969 0.92273 0.92920 0.93027 0.99124 0.99117 0.92763 0.93621 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.97 71.98 0.72 -1.11 16 2 C 0.04 0.54 5.53 86.31 0.48 1.01 16 3 N -0.52 -9.49 5.38 -880.76 -4.73 -14.23 16 4 C 0.03 0.61 5.74 86.45 0.50 1.10 16 5 C -0.11 -2.21 6.49 31.49 0.20 -2.01 16 6 C -0.08 -1.62 3.23 -9.89 -0.03 -1.65 16 7 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 8 C 0.07 1.60 4.75 86.30 0.41 2.01 16 9 N -0.69 -19.22 6.29 -513.89 -3.23 -22.45 16 10 C 0.07 2.52 5.68 86.30 0.49 3.01 16 11 C -0.09 -3.85 5.41 30.59 0.17 -3.68 16 12 C 0.02 1.31 4.97 29.85 0.15 1.46 16 13 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 16 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 17 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 C 0.04 0.70 6.05 86.40 0.52 1.22 16 22 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.68 7.26 -2.39 -0.02 0.67 16 25 H 0.03 0.51 7.88 -2.39 -0.02 0.49 16 26 H 0.08 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.08 1.42 7.77 -2.38 -0.02 1.41 16 28 H 0.04 0.74 7.82 -2.39 -0.02 0.72 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.56 7.67 -2.39 -0.02 1.54 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.34 8.91 8.73 -89.70 -0.78 8.12 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.05 0.81 7.72 -2.39 -0.02 0.79 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -63.57 333.08 -1.20 -64.77 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.16 Total: 12.24 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 4.30 Total: -29.71 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -7.68 Total: -94.18 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.57 -1.20 -64.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.037 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds