Wall clock time and date at job start Mon Mar 30 2020 03:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47005 * 2 1 4 4 C 1.48539 * 110.99796 * 287.39483 * 3 2 1 5 5 C 1.54932 * 103.22489 * 200.27757 * 4 3 2 6 6 C 1.54598 * 102.92273 * 37.41993 * 5 4 3 7 7 H 1.09002 * 110.31174 * 96.95391 * 6 5 4 8 8 C 1.52997 * 110.39179 * 219.08302 * 6 5 4 9 9 N 1.46903 * 109.46851 * 292.14957 * 8 6 5 10 10 C 1.46903 * 110.99771 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47022 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47128 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99831 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99696 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00390 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99558 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47376 * 59.99939 * 17 15 13 19 19 H 1.48501 * 109.46980 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47267 * 300.00132 * 17 15 13 21 21 C 1.47897 * 110.99752 * 170.00361 * 3 2 1 22 22 H 1.08990 * 109.47273 * 60.00030 * 1 2 3 23 23 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46683 * 300.00039 * 1 2 3 25 25 H 1.09002 * 109.46683 * 239.99961 * 2 1 3 26 26 H 1.08997 * 109.47079 * 120.00340 * 2 1 3 27 27 H 1.08999 * 110.66816 * 318.71519 * 4 3 2 28 28 H 1.09005 * 110.66277 * 81.67794 * 4 3 2 29 29 H 1.08994 * 110.72994 * 279.05876 * 5 4 3 30 30 H 1.09002 * 110.72359 * 155.77140 * 5 4 3 31 31 H 1.08993 * 109.47324 * 52.14888 * 8 6 5 32 32 H 1.09001 * 109.47249 * 172.15261 * 8 6 5 33 33 H 1.00896 * 111.00404 * 303.95408 * 9 8 6 34 34 H 1.08998 * 109.47310 * 299.99914 * 10 9 8 35 35 H 1.09003 * 109.47286 * 60.00482 * 10 9 8 36 36 H 1.08998 * 109.47018 * 300.00105 * 11 10 9 37 37 H 1.09001 * 109.46969 * 59.99676 * 11 10 9 38 38 H 1.08998 * 109.47117 * 299.99891 * 12 11 10 39 39 H 1.09001 * 109.47571 * 59.99891 * 12 11 10 40 40 H 0.96994 * 120.00210 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.92227 * 26.48731 * 21 3 2 42 42 H 1.08999 * 109.91658 * 265.19118 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8062 2.0250 -1.3233 5 6 2.8087 3.2062 -1.3116 6 6 4.0330 2.6134 -0.5769 7 1 4.7725 2.2621 -1.2965 8 6 4.6531 3.6573 0.3539 9 7 5.2521 4.7333 -0.4471 10 6 5.8592 5.7560 0.4152 11 6 6.4717 6.8569 -0.4529 12 6 7.1046 7.9218 0.4451 13 6 7.7085 9.0058 -0.4100 14 1 7.6467 8.9419 -1.4863 15 6 8.3389 10.0798 0.1819 16 7 8.4137 10.1579 1.4925 17 14 9.0868 11.4239 -0.8781 18 1 8.0261 12.0451 -1.7113 19 1 9.7012 12.4573 -0.0065 20 1 10.1284 10.8374 -1.7593 21 6 3.4784 1.4314 0.2397 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0405 1.3296 -2.1293 28 1 0.7821 2.3871 -1.4148 29 1 2.4007 4.0531 -0.7599 30 1 3.0730 3.4979 -2.3281 31 1 3.8800 4.0728 1.0002 32 1 5.4236 3.1873 0.9650 33 1 5.9268 4.3649 -1.1006 34 1 5.0947 6.1861 1.0623 35 1 6.6382 5.3002 1.0264 36 1 7.2363 6.4265 -1.0997 37 1 5.6931 7.3128 -1.0645 38 1 6.3403 8.3523 1.0922 39 1 7.8833 7.4656 1.0564 40 1 8.8576 10.9132 1.9088 41 1 3.9392 0.5014 -0.0932 42 1 3.6756 1.5879 1.3002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:48 Heat of formation + Delta-G solvation = -21.700954 kcal Electronic energy + Delta-G solvation = -16858.465091 eV Core-core repulsion = 14258.135903 eV Total energy + Delta-G solvation = -2600.329188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41166 -36.45402 -34.17806 -32.97239 -31.19045 -29.35972 -29.11973 -26.24462 -23.87455 -23.08040 -22.05420 -20.92983 -20.52446 -19.73159 -16.37994 -16.15078 -15.90615 -15.35026 -14.94417 -14.51335 -14.21926 -14.02115 -13.67952 -13.23029 -13.11989 -12.70397 -12.29353 -11.95848 -11.83489 -11.59440 -11.51211 -11.47556 -11.15621 -11.01484 -10.92205 -10.71297 -10.61279 -10.53343 -10.42921 -9.64855 -9.29162 -9.02647 -8.64362 -8.30972 -8.11003 -5.96206 -3.98289 3.36019 3.39953 3.42819 3.76797 4.24869 4.49316 4.56692 4.62005 4.83484 4.90791 5.04727 5.12815 5.21718 5.29620 5.39352 5.41516 5.46444 5.51687 5.65660 5.66904 5.72324 5.81166 5.85997 5.91120 5.94515 6.04201 6.13595 6.25600 6.36908 6.71100 6.76304 6.81081 6.84152 7.17945 7.39065 7.67692 7.72439 7.87981 8.04458 8.47731 9.08816 9.65401 11.15270 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.072699 B = 0.002962 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.058303 B = 9451.092726 C = 9590.425680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 N -0.518 5.518 4 C 0.031 3.969 5 C -0.104 4.104 6 C -0.096 4.096 7 H 0.071 0.929 8 C 0.069 3.931 9 N -0.690 5.690 10 C 0.059 3.941 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.041 3.959 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.335 0.665 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.260 0.740 41 H 0.042 0.958 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -20.382 -3.679 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 N -0.242 5.242 4 C -0.097 4.097 5 C -0.142 4.142 6 C -0.115 4.115 7 H 0.090 0.910 8 C -0.061 4.061 9 N -0.320 5.320 10 C -0.069 4.069 11 C -0.144 4.144 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.088 4.088 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.152 0.848 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.450 -19.667 -3.176 24.037 hybrid contribution 1.747 -0.211 -0.773 1.922 sum -11.703 -19.878 -3.949 23.403 Atomic orbital electron populations 1.21732 0.94749 1.01299 1.02583 1.22246 0.96454 0.89459 1.00579 1.64779 1.13911 1.16266 1.29281 1.23331 1.00536 0.96209 0.89589 1.22415 0.93687 0.97287 1.00837 1.21998 0.97724 0.94610 0.97182 0.91022 1.22007 0.98065 0.91310 0.94729 1.60546 1.38484 1.13624 1.19370 1.22120 0.96826 0.92703 0.95272 1.21615 0.98757 0.95571 0.98483 1.19064 0.95416 0.92424 0.94678 1.21228 1.35612 1.05806 0.93082 0.92735 1.25035 0.96352 0.98242 0.94933 1.69954 1.43952 1.30969 1.08776 0.86652 0.79476 0.81585 0.80243 1.20212 1.21327 1.20292 1.22883 0.87706 0.97130 1.01050 0.92759 0.92523 0.91815 0.94889 0.91024 0.94147 0.90196 0.90116 0.90920 0.90721 0.95718 0.84805 0.91504 0.95898 0.93753 0.92581 0.96577 0.96856 0.92992 0.93975 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.00 37.16 0.37 -0.69 16 2 C 0.04 0.34 5.42 -3.82 -0.02 0.32 16 3 N -0.52 -5.18 5.24 -230.45 -1.21 -6.39 16 4 C 0.03 0.29 5.91 -1.90 -0.01 0.28 16 5 C -0.10 -1.11 6.45 -24.87 -0.16 -1.27 16 6 C -0.10 -1.01 3.17 -89.26 -0.28 -1.29 16 7 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 8 C 0.07 0.85 4.77 -3.82 -0.02 0.84 16 9 N -0.69 -10.13 6.34 -113.78 -0.72 -10.85 16 10 C 0.06 1.05 5.69 -3.82 -0.02 1.03 16 11 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.04 0.40 6.32 -2.75 -0.02 0.38 16 22 H 0.05 0.40 7.36 -51.93 -0.38 0.02 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.03 0.26 7.83 -51.93 -0.41 -0.14 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.04 0.36 7.81 -51.93 -0.41 -0.04 16 28 H 0.08 0.73 7.80 -51.93 -0.40 0.32 16 29 H 0.08 0.98 7.79 -51.93 -0.40 0.58 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.33 4.61 8.73 -39.29 -0.34 4.26 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.04 0.38 7.77 -51.93 -0.40 -0.03 16 42 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -30.17 332.93 -10.23 -40.40 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.18 Total: -2.25 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -0.85 Total: -16.19 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -1.19 Total: -43.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.17 -10.23 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.699 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds