Wall clock time and date at job start Mon Mar 30 2020 03:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47005 * 2 1 4 4 C 1.48539 * 110.99796 * 287.39483 * 3 2 1 5 5 C 1.54932 * 103.22489 * 200.27757 * 4 3 2 6 6 C 1.54598 * 102.92273 * 37.41993 * 5 4 3 7 7 H 1.09002 * 110.31174 * 96.95391 * 6 5 4 8 8 C 1.52997 * 110.39179 * 219.08302 * 6 5 4 9 9 N 1.46903 * 109.46851 * 292.14957 * 8 6 5 10 10 C 1.46903 * 110.99771 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47022 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47128 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99831 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99696 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00390 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99558 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47376 * 59.99939 * 17 15 13 19 19 H 1.48501 * 109.46980 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47267 * 300.00132 * 17 15 13 21 21 C 1.47897 * 110.99752 * 170.00361 * 3 2 1 22 22 H 1.08990 * 109.47273 * 60.00030 * 1 2 3 23 23 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46683 * 300.00039 * 1 2 3 25 25 H 1.09002 * 109.46683 * 239.99961 * 2 1 3 26 26 H 1.08997 * 109.47079 * 120.00340 * 2 1 3 27 27 H 1.08999 * 110.66816 * 318.71519 * 4 3 2 28 28 H 1.09005 * 110.66277 * 81.67794 * 4 3 2 29 29 H 1.08994 * 110.72994 * 279.05876 * 5 4 3 30 30 H 1.09002 * 110.72359 * 155.77140 * 5 4 3 31 31 H 1.08993 * 109.47324 * 52.14888 * 8 6 5 32 32 H 1.09001 * 109.47249 * 172.15261 * 8 6 5 33 33 H 1.00896 * 111.00404 * 303.95408 * 9 8 6 34 34 H 1.08998 * 109.47310 * 299.99914 * 10 9 8 35 35 H 1.09003 * 109.47286 * 60.00482 * 10 9 8 36 36 H 1.08998 * 109.47018 * 300.00105 * 11 10 9 37 37 H 1.09001 * 109.46969 * 59.99676 * 11 10 9 38 38 H 1.08998 * 109.47117 * 299.99891 * 12 11 10 39 39 H 1.09001 * 109.47571 * 59.99891 * 12 11 10 40 40 H 0.96994 * 120.00210 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.92227 * 26.48731 * 21 3 2 42 42 H 1.08999 * 109.91658 * 265.19118 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8062 2.0250 -1.3233 5 6 2.8087 3.2062 -1.3116 6 6 4.0330 2.6134 -0.5769 7 1 4.7725 2.2621 -1.2965 8 6 4.6531 3.6573 0.3539 9 7 5.2521 4.7333 -0.4471 10 6 5.8592 5.7560 0.4152 11 6 6.4717 6.8569 -0.4529 12 6 7.1046 7.9218 0.4451 13 6 7.7085 9.0058 -0.4100 14 1 7.6467 8.9419 -1.4863 15 6 8.3389 10.0798 0.1819 16 7 8.4137 10.1579 1.4925 17 14 9.0868 11.4239 -0.8781 18 1 8.0261 12.0451 -1.7113 19 1 9.7012 12.4573 -0.0065 20 1 10.1284 10.8374 -1.7593 21 6 3.4784 1.4314 0.2397 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0405 1.3296 -2.1293 28 1 0.7821 2.3871 -1.4148 29 1 2.4007 4.0531 -0.7599 30 1 3.0730 3.4979 -2.3281 31 1 3.8800 4.0728 1.0002 32 1 5.4236 3.1873 0.9650 33 1 5.9268 4.3649 -1.1006 34 1 5.0947 6.1861 1.0623 35 1 6.6382 5.3002 1.0264 36 1 7.2363 6.4265 -1.0997 37 1 5.6931 7.3128 -1.0645 38 1 6.3403 8.3523 1.0922 39 1 7.8833 7.4656 1.0564 40 1 8.8576 10.9132 1.9088 41 1 3.9392 0.5014 -0.0932 42 1 3.6756 1.5879 1.3002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:47 Heat of formation + Delta-G solvation = -41.598115 kcal Electronic energy + Delta-G solvation = -16859.327897 eV Core-core repulsion = 14258.135903 eV Total energy + Delta-G solvation = -2601.191993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21512 -37.73945 -35.73007 -34.43187 -32.78588 -30.31208 -30.04032 -27.94817 -25.28820 -23.79611 -23.60576 -22.06000 -21.65542 -20.89181 -18.47398 -17.13505 -16.85549 -16.57104 -16.43004 -15.66634 -15.43505 -15.18655 -14.96765 -14.36288 -14.01558 -13.97875 -13.61796 -13.38029 -13.23069 -12.85240 -12.68015 -12.49399 -12.39367 -12.30073 -12.21301 -12.01165 -11.80240 -11.70001 -11.52093 -11.43655 -11.35063 -11.03221 -10.54847 -9.36742 -9.33064 -8.19837 -6.31186 1.40163 1.43733 1.51659 2.41381 3.05613 3.13008 3.18520 3.73199 3.81025 3.95603 4.19649 4.25038 4.35284 4.36912 4.38452 4.50382 4.59162 4.62984 4.67121 4.72984 4.76353 4.85442 4.96810 4.97374 5.01513 5.08403 5.10166 5.11623 5.24501 5.27069 5.36568 5.40305 5.52096 5.75315 5.85988 5.97248 6.06705 6.15020 6.27284 6.51924 6.85742 7.38004 8.92020 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.072699 B = 0.002962 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.058303 B = 9451.092726 C = 9590.425680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 N -0.534 5.534 4 C 0.036 3.964 5 C -0.104 4.104 6 C -0.089 4.089 7 H 0.081 0.919 8 C 0.072 3.928 9 N -0.688 5.688 10 C 0.072 3.928 11 C -0.091 4.091 12 C 0.024 3.976 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.043 3.957 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.344 0.656 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.051 0.949 37 H 0.052 0.948 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.054 0.946 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 -21.290 -5.097 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 N -0.259 5.259 4 C -0.091 4.091 5 C -0.142 4.142 6 C -0.109 4.109 7 H 0.099 0.901 8 C -0.057 4.057 9 N -0.319 5.319 10 C -0.057 4.057 11 C -0.129 4.129 12 C -0.013 4.013 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.085 4.085 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.162 0.838 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.549 -20.599 -4.605 25.082 hybrid contribution 1.745 0.039 -0.295 1.770 sum -11.804 -20.560 -4.900 24.209 Atomic orbital electron populations 1.21710 0.94140 1.02144 1.02045 1.22306 0.96961 0.88558 1.01033 1.64780 1.13992 1.17507 1.29613 1.23283 1.00287 0.95803 0.89755 1.22369 0.94072 0.97165 1.00599 1.21940 0.97740 0.94220 0.96965 0.90069 1.22004 0.97767 0.91014 0.94916 1.60449 1.38255 1.14046 1.19183 1.21814 0.96446 0.92633 0.94786 1.21361 0.98572 0.95132 0.97827 1.18977 0.94173 0.93457 0.94720 1.21681 1.36028 1.06810 0.93689 0.92163 1.26024 0.96723 1.00974 0.96330 1.70091 1.44723 1.31954 1.10729 0.85473 0.78841 0.78147 0.78425 1.19147 1.20793 1.19059 1.22840 0.87820 0.97158 1.00679 0.92906 0.91017 0.92705 0.94297 0.90642 0.93230 0.90010 0.92010 0.90703 0.91833 0.95177 0.83834 0.92365 0.96015 0.93003 0.92916 0.99175 0.99138 0.92748 0.92791 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 10.00 71.98 0.72 -1.13 16 2 C 0.04 0.58 5.42 86.31 0.47 1.05 16 3 N -0.53 -9.89 5.24 -883.01 -4.63 -14.52 16 4 C 0.04 0.63 5.91 86.65 0.51 1.14 16 5 C -0.10 -2.09 6.45 31.80 0.21 -1.88 16 6 C -0.09 -1.73 3.17 -9.91 -0.03 -1.77 16 7 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 8 C 0.07 1.73 4.77 86.30 0.41 2.14 16 9 N -0.69 -19.49 6.34 -513.88 -3.26 -22.75 16 10 C 0.07 2.56 5.69 86.30 0.49 3.05 16 11 C -0.09 -3.85 5.41 30.59 0.17 -3.68 16 12 C 0.02 1.32 4.97 29.85 0.15 1.47 16 13 C -0.54 -31.78 9.11 25.60 0.23 -31.54 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 16 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 17 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.04 0.78 6.32 86.45 0.55 1.32 16 22 H 0.05 0.69 7.36 -2.39 -0.02 0.68 16 23 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.04 0.53 7.83 -2.39 -0.02 0.51 16 26 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.05 0.78 7.81 -2.39 -0.02 0.76 16 28 H 0.08 1.39 7.80 -2.38 -0.02 1.37 16 29 H 0.06 1.48 7.79 -2.39 -0.02 1.46 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.67 8.03 -2.39 -0.02 1.65 16 32 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.34 8.86 8.73 -89.70 -0.78 8.08 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.05 0.84 7.77 -2.39 -0.02 0.83 16 42 H 0.08 1.42 7.68 -2.39 -0.02 1.40 16 Total: -1.00 -64.18 332.93 -1.08 -65.26 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.16 Total: 12.34 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 4.33 Total: -29.54 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -7.60 Total: -95.01 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.18 -1.08 -65.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.659 kcal (2) G-P(sol) polarization free energy of solvation -64.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds