Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46899 * 109.47254 * 174.99689 * 4 2 1 6 6 C 1.48534 * 110.99830 * 52.60377 * 5 4 2 7 7 C 1.54939 * 103.22817 * 159.71871 * 6 5 4 8 8 C 1.54596 * 102.92012 * 322.58829 * 7 6 5 9 9 C 1.47901 * 111.00170 * 169.99716 * 5 4 2 10 10 N 1.46905 * 109.46799 * 240.00580 * 2 1 3 11 11 C 1.46898 * 111.00329 * 85.00053 * 10 2 1 12 12 C 1.53000 * 109.47174 * 179.97438 * 11 10 2 13 13 C 1.53000 * 109.46937 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46804 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00119 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99879 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00301 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46936 * 60.00440 * 18 16 14 20 20 H 1.48504 * 109.47035 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47321 * 300.00095 * 18 16 14 22 22 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 23 23 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 25 25 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 26 26 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 27 27 H 1.08996 * 110.66891 * 278.15580 * 6 5 4 28 28 H 1.09001 * 110.67193 * 41.28416 * 6 5 4 29 29 H 1.08998 * 110.72475 * 204.22657 * 7 6 5 30 30 H 1.09000 * 110.72444 * 80.94246 * 7 6 5 31 31 H 1.09001 * 110.31032 * 263.03776 * 8 7 6 32 32 H 1.09004 * 110.30836 * 140.87248 * 8 7 6 33 33 H 1.08999 * 109.91618 * 333.51273 * 9 5 4 34 34 H 1.09004 * 109.91578 * 94.60372 * 9 5 4 35 35 H 1.00900 * 110.99586 * 208.95683 * 10 2 1 36 36 H 1.09003 * 109.46664 * 299.99985 * 11 10 2 37 37 H 1.09002 * 109.47064 * 59.99547 * 11 10 2 38 38 H 1.09000 * 109.46995 * 299.99851 * 12 11 10 39 39 H 1.09001 * 109.46821 * 59.99818 * 12 11 10 40 40 H 1.09000 * 109.47447 * 299.99930 * 13 12 11 41 41 H 1.09001 * 109.47223 * 60.00420 * 13 12 11 42 42 H 0.97001 * 120.00337 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8268 1.1902 6 6 4.1240 0.5012 0.9487 7 6 5.5822 0.3053 1.4343 8 6 5.4149 -0.6062 2.6717 9 6 4.0537 -1.2999 2.4792 10 7 2.0195 -0.6924 -1.1996 11 6 2.0823 0.2227 -2.3470 12 6 2.5960 -0.5327 -3.5743 13 6 2.6608 0.4203 -4.7695 14 6 3.1662 -0.3239 -5.9785 15 1 3.4158 -1.3719 -5.9022 16 6 3.3090 0.3328 -7.1824 17 7 3.0046 1.6089 -7.2755 18 14 3.9361 -0.5895 -8.6809 19 1 3.0157 -1.7125 -8.9919 20 1 3.9989 0.3355 -9.8410 21 1 5.2928 -1.1244 -8.4010 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6054 -1.7199 1.2951 26 1 1.7517 -0.1584 2.1369 27 1 4.1020 0.7488 -0.1125 28 1 3.6236 1.2719 1.5350 29 1 6.0266 1.2600 1.7157 30 1 6.1805 -0.1892 0.6691 31 1 5.4097 -0.0091 3.5836 32 1 6.2148 -1.3460 2.7076 33 1 3.3803 -1.0282 3.2921 34 1 4.1852 -2.3816 2.4522 35 1 2.9171 -1.1205 -1.0289 36 1 1.0869 0.6165 -2.5525 37 1 2.7587 1.0463 -2.1182 38 1 3.5915 -0.9261 -3.3684 39 1 1.9199 -1.3565 -3.8031 40 1 1.6652 0.8134 -4.9752 41 1 3.3367 1.2444 -4.5409 42 1 3.1054 2.0710 -8.1224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = -17.369370 kcal Electronic energy + Delta-G solvation = -17514.912244 eV Core-core repulsion = 14914.770888 eV Total energy + Delta-G solvation = -2600.141356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42015 -36.70249 -34.06965 -32.42423 -31.02661 -29.33411 -29.02733 -26.04634 -25.25295 -22.46301 -21.71750 -20.97227 -20.18972 -19.54815 -16.46342 -16.14105 -16.10128 -15.65946 -14.79624 -14.40084 -14.27187 -13.77986 -13.43423 -13.11574 -12.79829 -12.33459 -12.24923 -12.08198 -11.86026 -11.64204 -11.46144 -11.31551 -11.30472 -11.08109 -10.82184 -10.73392 -10.58514 -10.42698 -10.40518 -9.59341 -9.24517 -8.98921 -8.57903 -8.27825 -7.97373 -5.93343 -3.95054 3.38346 3.41924 3.45191 3.79868 4.41849 4.48452 4.51804 4.57883 4.77144 4.95245 5.07981 5.24718 5.30974 5.35718 5.42297 5.43842 5.55592 5.58010 5.65338 5.72990 5.80400 5.82342 5.90341 5.95552 6.02279 6.03288 6.13207 6.33093 6.47333 6.71543 6.83661 6.84992 6.93904 7.24422 7.53982 7.75974 7.89663 7.96493 8.07796 8.51641 9.12108 9.68531 11.18146 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.004311 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.525695 B = 6493.931224 C = 7065.471242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.083 3.917 3 H 0.038 0.962 4 C 0.046 3.954 5 N -0.517 5.517 6 C 0.030 3.970 7 C -0.124 4.124 8 C -0.131 4.131 9 C 0.037 3.963 10 N -0.683 5.683 11 C 0.061 3.939 12 C -0.106 4.106 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.352 0.648 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -2.512 21.223 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.056 0.944 4 C -0.083 4.083 5 N -0.241 5.241 6 C -0.098 4.098 7 C -0.162 4.162 8 C -0.169 4.169 9 C -0.091 4.091 10 N -0.317 5.317 11 C -0.068 4.068 12 C -0.144 4.144 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.173 0.827 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.324 -2.986 20.518 20.737 hybrid contribution 0.827 0.747 0.004 1.115 sum 1.151 -2.238 20.523 20.676 Atomic orbital electron populations 1.21767 0.94633 1.02300 1.01058 1.21524 0.95726 0.95588 0.89891 0.94383 1.22532 0.87618 1.01454 0.96683 1.64730 1.05562 1.23355 1.30475 1.23295 0.94297 0.90456 1.01718 1.22485 0.96562 0.99573 0.97622 1.22394 0.97276 0.98962 0.98250 1.22848 0.95237 1.00723 0.90242 1.60573 1.34716 1.33091 1.03355 1.22129 0.99983 0.93697 0.90990 1.21600 0.99295 0.99377 0.94103 1.19061 0.96986 0.94228 0.91240 1.21241 1.43375 0.96383 0.94564 0.92724 1.25025 0.95693 0.94879 0.98914 1.69962 1.49060 1.09012 1.25723 0.86663 0.79443 0.79609 0.82311 1.20233 1.21358 1.20280 0.92240 0.91965 0.93297 0.89779 0.94528 0.89826 0.93892 0.91139 0.90409 0.91758 0.90965 0.93995 0.90255 0.82706 0.91877 0.96281 0.93684 0.92658 0.96682 0.96910 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.41 37.15 0.35 -1.33 16 2 C 0.08 1.08 2.13 -67.71 -0.14 0.94 16 3 H 0.04 0.52 6.74 -51.93 -0.35 0.17 16 4 C 0.05 0.51 4.66 -3.83 -0.02 0.49 16 5 N -0.52 -5.87 4.25 -230.46 -0.98 -6.85 16 6 C 0.03 0.34 5.03 -1.90 -0.01 0.33 16 7 C -0.12 -1.19 7.06 -24.87 -0.18 -1.36 16 8 C -0.13 -1.09 6.93 -25.38 -0.18 -1.27 16 9 C 0.04 0.35 6.69 -2.76 -0.02 0.33 16 10 N -0.68 -10.74 6.31 -106.73 -0.67 -11.41 16 11 C 0.06 1.11 5.48 -3.83 -0.02 1.09 16 12 C -0.11 -2.31 5.41 -26.73 -0.14 -2.45 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 15 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 18 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H 0.06 0.78 7.45 -51.93 -0.39 0.40 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.37 7.81 -51.93 -0.41 -0.03 16 27 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 28 H 0.04 0.46 8.00 -51.93 -0.42 0.05 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.36 7.57 -51.93 -0.39 -0.03 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.35 5.62 7.25 -39.29 -0.28 5.33 16 36 H 0.06 1.18 7.44 -51.93 -0.39 0.79 16 37 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -30.26 328.89 -9.95 -40.21 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.06 Total: -0.49 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -0.91 Total: -16.68 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.92 Total: -45.13 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.26 -9.95 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.837 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds