Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46899 * 109.47254 * 174.99689 * 4 2 1 6 6 C 1.48534 * 110.99830 * 52.60377 * 5 4 2 7 7 C 1.54939 * 103.22817 * 159.71871 * 6 5 4 8 8 C 1.54596 * 102.92012 * 322.58829 * 7 6 5 9 9 C 1.47901 * 111.00170 * 169.99716 * 5 4 2 10 10 N 1.46905 * 109.46799 * 240.00580 * 2 1 3 11 11 C 1.46898 * 111.00329 * 85.00053 * 10 2 1 12 12 C 1.53000 * 109.47174 * 179.97438 * 11 10 2 13 13 C 1.53000 * 109.46937 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46804 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00119 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99879 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00301 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46936 * 60.00440 * 18 16 14 20 20 H 1.48504 * 109.47035 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47321 * 300.00095 * 18 16 14 22 22 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 23 23 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 25 25 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 26 26 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 27 27 H 1.08996 * 110.66891 * 278.15580 * 6 5 4 28 28 H 1.09001 * 110.67193 * 41.28416 * 6 5 4 29 29 H 1.08998 * 110.72475 * 204.22657 * 7 6 5 30 30 H 1.09000 * 110.72444 * 80.94246 * 7 6 5 31 31 H 1.09001 * 110.31032 * 263.03776 * 8 7 6 32 32 H 1.09004 * 110.30836 * 140.87248 * 8 7 6 33 33 H 1.08999 * 109.91618 * 333.51273 * 9 5 4 34 34 H 1.09004 * 109.91578 * 94.60372 * 9 5 4 35 35 H 1.00900 * 110.99586 * 208.95683 * 10 2 1 36 36 H 1.09003 * 109.46664 * 299.99985 * 11 10 2 37 37 H 1.09002 * 109.47064 * 59.99547 * 11 10 2 38 38 H 1.09000 * 109.46995 * 299.99851 * 12 11 10 39 39 H 1.09001 * 109.46821 * 59.99818 * 12 11 10 40 40 H 1.09000 * 109.47447 * 299.99930 * 13 12 11 41 41 H 1.09001 * 109.47223 * 60.00420 * 13 12 11 42 42 H 0.97001 * 120.00337 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8268 1.1902 6 6 4.1240 0.5012 0.9487 7 6 5.5822 0.3053 1.4343 8 6 5.4149 -0.6062 2.6717 9 6 4.0537 -1.2999 2.4792 10 7 2.0195 -0.6924 -1.1996 11 6 2.0823 0.2227 -2.3470 12 6 2.5960 -0.5327 -3.5743 13 6 2.6608 0.4203 -4.7695 14 6 3.1662 -0.3239 -5.9785 15 1 3.4158 -1.3719 -5.9022 16 6 3.3090 0.3328 -7.1824 17 7 3.0046 1.6089 -7.2755 18 14 3.9361 -0.5895 -8.6809 19 1 3.0157 -1.7125 -8.9919 20 1 3.9989 0.3355 -9.8410 21 1 5.2928 -1.1244 -8.4010 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6054 -1.7199 1.2951 26 1 1.7517 -0.1584 2.1369 27 1 4.1020 0.7488 -0.1125 28 1 3.6236 1.2719 1.5350 29 1 6.0266 1.2600 1.7157 30 1 6.1805 -0.1892 0.6691 31 1 5.4097 -0.0091 3.5836 32 1 6.2148 -1.3460 2.7076 33 1 3.3803 -1.0282 3.2921 34 1 4.1852 -2.3816 2.4522 35 1 2.9171 -1.1205 -1.0289 36 1 1.0869 0.6165 -2.5525 37 1 2.7587 1.0463 -2.1182 38 1 3.5915 -0.9261 -3.3684 39 1 1.9199 -1.3565 -3.8031 40 1 1.6652 0.8134 -4.9752 41 1 3.3367 1.2444 -4.5409 42 1 3.1054 2.0710 -8.1224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = -36.777076 kcal Electronic energy + Delta-G solvation = -17515.753826 eV Core-core repulsion = 14914.770888 eV Total energy + Delta-G solvation = -2600.982937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30074 -37.91465 -35.87485 -34.13956 -32.27568 -30.74415 -29.81609 -27.75950 -26.37371 -24.25717 -22.67946 -21.92724 -21.69130 -20.67678 -18.48307 -17.24955 -16.98388 -16.85770 -16.50376 -15.97424 -15.47897 -14.92646 -14.52072 -14.34723 -14.15135 -13.69134 -13.63213 -13.44039 -13.01395 -12.93135 -12.75268 -12.61566 -12.47896 -12.31900 -12.18483 -12.09406 -11.95970 -11.70102 -11.47927 -11.43912 -11.33901 -11.04252 -10.54420 -9.40750 -9.28008 -8.19341 -6.30656 1.40256 1.43985 1.51878 2.41897 2.95514 3.13442 3.32161 3.66811 3.73984 3.98217 4.11423 4.19476 4.26648 4.30670 4.37774 4.49496 4.53242 4.63781 4.69270 4.72129 4.83330 4.84183 4.88396 4.95265 4.97955 5.05197 5.09504 5.16657 5.19067 5.24212 5.30741 5.38428 5.52504 5.75295 5.85825 5.90960 6.02663 6.18650 6.30410 6.64094 6.85638 7.38471 8.92516 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.004311 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.525695 B = 6493.931224 C = 7065.471242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.032 0.968 4 C 0.053 3.947 5 N -0.534 5.534 6 C 0.030 3.970 7 C -0.124 4.124 8 C -0.125 4.125 9 C 0.036 3.964 10 N -0.682 5.682 11 C 0.076 3.924 12 C -0.090 4.090 13 C 0.027 3.973 14 C -0.544 4.544 15 H 0.059 0.941 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.266 1.266 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.351 0.649 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.046 0.954 39 H 0.051 0.949 40 H -0.009 1.009 41 H -0.011 1.011 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -3.536 22.336 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.050 0.950 4 C -0.075 4.075 5 N -0.258 5.258 6 C -0.098 4.098 7 C -0.162 4.162 8 C -0.163 4.163 9 C -0.091 4.091 10 N -0.316 5.316 11 C -0.053 4.053 12 C -0.128 4.128 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.191 1.191 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.172 0.828 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.009 0.991 41 H 0.008 0.992 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.703 -4.020 21.655 22.036 hybrid contribution 0.691 1.097 -0.309 1.333 sum 1.394 -2.923 21.346 21.590 Atomic orbital electron populations 1.21745 0.93745 1.02453 1.01479 1.21619 0.96352 0.95294 0.89542 0.94960 1.22441 0.87672 1.01403 0.95997 1.64697 1.05662 1.23430 1.32052 1.23230 0.95546 0.90689 1.00304 1.22484 0.95343 1.00440 0.97973 1.22388 0.96958 0.98922 0.98053 1.22909 0.95847 1.00886 0.89504 1.60537 1.34655 1.32646 1.03782 1.21813 0.99253 0.93463 0.90811 1.21350 0.99504 0.98253 0.93721 1.18957 0.94744 0.94374 0.93002 1.21667 1.43905 0.96859 0.95798 0.92318 1.25998 0.95609 0.95786 1.02427 1.70096 1.49819 1.10729 1.26810 0.85483 0.79218 0.78354 0.77889 1.19163 1.20658 1.19133 0.93852 0.91911 0.90871 0.89669 0.92850 0.92330 0.93389 0.90007 0.91560 0.90303 0.90237 0.92908 0.90076 0.82797 0.92379 0.96675 0.93500 0.93024 0.99103 0.99214 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.41 71.98 0.68 -2.42 16 2 C 0.08 2.05 2.13 44.91 0.10 2.15 16 3 H 0.03 0.86 6.74 -2.39 -0.02 0.85 16 4 C 0.05 1.09 4.66 86.30 0.40 1.49 16 5 N -0.53 -11.37 4.25 -883.03 -3.76 -15.12 16 6 C 0.03 0.65 5.03 86.65 0.44 1.09 16 7 C -0.12 -2.23 7.06 31.80 0.22 -2.01 16 8 C -0.13 -1.81 6.93 31.47 0.22 -1.59 16 9 C 0.04 0.59 6.69 86.44 0.58 1.17 16 10 N -0.68 -21.24 6.31 -491.57 -3.10 -24.34 16 11 C 0.08 2.83 5.48 86.30 0.47 3.30 16 12 C -0.09 -4.01 5.41 30.59 0.17 -3.85 16 13 C 0.03 1.49 4.97 29.85 0.15 1.64 16 14 C -0.54 -32.30 9.11 25.60 0.23 -32.07 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 16 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 17 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 18 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H 0.04 1.12 7.45 -2.39 -0.02 1.10 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 0.93 7.81 -2.39 -0.02 0.91 16 27 H 0.06 1.54 7.74 -2.39 -0.02 1.53 16 28 H 0.05 0.97 8.00 -2.39 -0.02 0.95 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.05 0.76 7.57 -2.39 -0.02 0.74 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.35 11.09 7.25 -89.69 -0.65 10.44 16 36 H 0.06 2.22 7.44 -2.39 -0.02 2.20 16 37 H 0.02 0.57 8.06 -2.39 -0.02 0.55 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -64.83 328.89 -0.13 -64.96 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.30 Total: 15.80 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 4.12 Total: -30.67 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -6.57 Total: -97.50 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -64.83 -0.13 -64.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.185 kcal (2) G-P(sol) polarization free energy of solvation -64.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds