Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47335 * 2 1 4 4 C 1.53001 * 109.47068 * 240.00783 * 2 1 3 5 5 N 1.46899 * 109.47403 * 64.72303 * 4 2 1 6 6 C 1.48525 * 111.00269 * 58.22138 * 5 4 2 7 7 C 1.54934 * 103.23037 * 159.72068 * 6 5 4 8 8 C 1.54590 * 102.92041 * 322.58994 * 7 6 5 9 9 C 1.47905 * 111.00110 * 175.61925 * 5 4 2 10 10 N 1.46896 * 109.47439 * 120.00412 * 2 1 3 11 11 C 1.46894 * 111.00112 * 278.58489 * 10 2 1 12 12 C 1.53004 * 109.47279 * 179.97438 * 11 10 2 13 13 C 1.52997 * 109.47281 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46959 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00112 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99618 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99787 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00210 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47397 * 90.00141 * 18 16 14 20 20 H 1.48497 * 109.47112 * 210.00037 * 18 16 14 21 21 H 1.48500 * 109.47079 * 329.99664 * 18 16 14 22 22 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47238 * 59.99165 * 1 2 3 24 24 H 1.09003 * 109.46987 * 299.99982 * 1 2 3 25 25 H 1.09000 * 109.47160 * 184.72713 * 4 2 1 26 26 H 1.08998 * 109.46784 * 304.71966 * 4 2 1 27 27 H 1.09004 * 110.67167 * 278.15924 * 6 5 4 28 28 H 1.09007 * 110.66869 * 41.28405 * 6 5 4 29 29 H 1.09000 * 110.72620 * 204.22767 * 7 6 5 30 30 H 1.09007 * 110.72195 * 80.94591 * 7 6 5 31 31 H 1.09002 * 110.30717 * 263.03383 * 8 7 6 32 32 H 1.09002 * 110.30735 * 140.87449 * 8 7 6 33 33 H 1.08993 * 109.91415 * 333.50816 * 9 5 4 34 34 H 1.09004 * 109.91485 * 94.60301 * 9 5 4 35 35 H 1.00903 * 111.00081 * 154.62319 * 10 2 1 36 36 H 1.08998 * 109.47012 * 299.99102 * 11 10 2 37 37 H 1.08994 * 109.47518 * 59.99868 * 11 10 2 38 38 H 1.08996 * 109.46721 * 300.00160 * 12 11 10 39 39 H 1.09006 * 109.47107 * 59.99753 * 12 11 10 40 40 H 1.08999 * 109.46802 * 299.99874 * 13 12 11 41 41 H 1.08997 * 109.46955 * 59.99910 * 13 12 11 42 42 H 0.96995 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 1.6456 0.0342 -2.4460 6 6 2.1802 1.4192 -2.4014 7 6 2.1395 1.8629 -3.8853 8 6 2.5285 0.5726 -4.6427 9 6 2.2107 -0.5769 -3.6686 10 7 2.0197 -0.6925 1.1993 11 6 2.0022 0.1994 2.3663 12 6 2.5172 -0.5558 3.5933 13 6 2.4996 0.3734 4.8086 14 6 3.0076 -0.3703 6.0170 15 1 3.3128 -1.4024 5.9269 16 6 3.0825 0.2669 7.2374 17 7 3.5253 -0.3823 8.2920 18 14 2.5552 2.0521 7.3929 19 1 1.1101 2.1140 7.7291 20 1 3.3419 2.7088 8.4676 21 1 2.7945 2.7529 6.1057 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 3.1266 -0.7950 -1.2080 26 1 1.6092 -1.7214 -1.2927 27 1 1.5421 2.0585 -1.7911 28 1 3.2036 1.4248 -2.0261 29 1 2.8664 2.6536 -4.0716 30 1 1.1365 2.1862 -4.1639 31 1 3.5915 0.5813 -4.8837 32 1 1.9347 0.4738 -5.5514 33 1 3.1237 -1.1198 -3.4244 34 1 1.4835 -1.2553 -4.1148 35 1 2.9427 -1.0708 1.0470 36 1 2.6418 1.0609 2.1747 37 1 0.9824 0.5376 2.5500 38 1 1.8774 -1.4172 3.7847 39 1 3.5371 -0.8943 3.4099 40 1 3.1398 1.2345 4.6169 41 1 1.4801 0.7123 4.9921 42 1 3.5784 0.0661 9.1504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = -14.602886 kcal Electronic energy + Delta-G solvation = -17194.620247 eV Core-core repulsion = 14594.598855 eV Total energy + Delta-G solvation = -2600.021392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43107 -36.99151 -34.21756 -32.56137 -31.23546 -29.48236 -28.94169 -26.62863 -25.40631 -22.41806 -21.65843 -21.04477 -20.32366 -19.62387 -16.74307 -16.41918 -16.23773 -15.70806 -14.75540 -14.46715 -14.34173 -13.97050 -13.70812 -13.34489 -12.70645 -12.68728 -12.32486 -12.29054 -11.84580 -11.79552 -11.67389 -11.44554 -11.40951 -11.19313 -10.92186 -10.83513 -10.80409 -10.57781 -9.91004 -9.69832 -9.53812 -9.14308 -8.67424 -8.51027 -8.21681 -6.01425 -3.99014 3.32627 3.39540 3.43431 3.64523 4.28114 4.39008 4.47716 4.52638 4.66254 4.85940 4.96674 5.01315 5.19470 5.32537 5.32687 5.37194 5.47244 5.52112 5.63133 5.64458 5.68140 5.71404 5.78468 5.85612 5.88163 6.01603 6.09106 6.21389 6.42162 6.58908 6.60561 6.64449 6.78671 6.95194 7.26935 7.38053 7.47369 7.60558 7.83391 8.58118 9.04267 9.61313 11.12242 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046836 B = 0.003557 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.683080 B = 7869.478686 C = 8064.146622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.084 3.916 3 H 0.039 0.961 4 C 0.048 3.952 5 N -0.512 5.512 6 C 0.031 3.969 7 C -0.124 4.124 8 C -0.131 4.131 9 C 0.035 3.965 10 N -0.686 5.686 11 C 0.059 3.941 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.336 0.664 36 H 0.022 0.978 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 3.338 -25.641 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.026 4.026 3 H 0.057 0.943 4 C -0.080 4.080 5 N -0.237 5.237 6 C -0.097 4.097 7 C -0.162 4.162 8 C -0.169 4.169 9 C -0.093 4.093 10 N -0.318 5.318 11 C -0.070 4.070 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.196 3.061 -25.311 25.839 hybrid contribution 1.486 1.430 0.177 2.070 sum -2.711 4.492 -25.134 25.676 Atomic orbital electron populations 1.21678 0.93860 1.02227 1.01017 1.21514 0.96960 0.95423 0.88673 0.94326 1.22435 0.97509 0.98485 0.89601 1.64745 1.55148 1.02036 1.01735 1.23277 0.98432 0.90892 0.97095 1.22482 1.02105 0.97095 0.94523 1.22393 1.01242 0.94649 0.98646 1.22858 0.98400 0.97015 0.91019 1.60562 1.30699 1.37192 1.03339 1.22170 1.00675 0.93698 0.90430 1.21444 0.99986 0.99224 0.93070 1.19541 0.96256 0.95464 0.93810 1.21163 1.42793 0.99833 0.91854 0.91025 1.25047 0.94793 0.97986 0.95800 1.69919 1.47333 1.37018 1.00177 0.86760 0.78836 0.85691 0.77875 1.20270 1.21442 1.19115 0.92311 0.91970 0.93244 0.94945 0.89709 0.89833 0.93846 0.91156 0.90689 0.91630 0.91011 0.93827 0.90277 0.84604 0.95999 0.91386 0.91916 0.93117 0.96917 0.97047 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.26 37.16 0.34 -1.26 16 2 C 0.08 1.04 2.49 -67.72 -0.17 0.87 16 3 H 0.04 0.50 6.37 -51.92 -0.33 0.17 16 4 C 0.05 0.52 4.31 -3.82 -0.02 0.50 16 5 N -0.51 -5.09 4.79 -230.46 -1.11 -6.19 16 6 C 0.03 0.28 5.33 -1.90 -0.01 0.27 16 7 C -0.12 -0.92 7.06 -24.87 -0.18 -1.10 16 8 C -0.13 -0.92 6.93 -25.38 -0.18 -1.09 16 9 C 0.04 0.29 6.70 -2.76 -0.02 0.28 16 10 N -0.69 -9.89 6.30 -106.73 -0.67 -10.56 16 11 C 0.06 0.99 5.49 -3.83 -0.02 0.97 16 12 C -0.10 -2.02 5.41 -26.73 -0.14 -2.16 16 13 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 14 C -0.52 -15.16 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 18 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.07 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.72 7.74 -51.93 -0.40 0.31 16 24 H 0.05 0.65 7.24 -51.93 -0.38 0.27 16 25 H 0.03 0.34 7.86 -51.93 -0.41 -0.06 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.08 0.80 7.55 -51.93 -0.39 0.41 16 28 H 0.04 0.42 8.02 -51.92 -0.42 0.00 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.36 7.66 -51.93 -0.40 -0.04 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.34 4.55 8.34 -39.29 -0.33 4.22 16 36 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 37 H 0.07 1.16 7.20 -51.93 -0.37 0.78 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -30.70 325.81 -9.69 -40.39 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -8.00 Total: -1.52 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.93 Total: -16.82 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -1.00 Total: -44.44 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.70 -9.69 -40.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.787 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds