Wall clock time and date at job start Mon Mar 30 2020 03:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47335 * 2 1 4 4 C 1.53001 * 109.47068 * 240.00783 * 2 1 3 5 5 N 1.46899 * 109.47403 * 64.72303 * 4 2 1 6 6 C 1.48525 * 111.00269 * 58.22138 * 5 4 2 7 7 C 1.54934 * 103.23037 * 159.72068 * 6 5 4 8 8 C 1.54590 * 102.92041 * 322.58994 * 7 6 5 9 9 C 1.47905 * 111.00110 * 175.61925 * 5 4 2 10 10 N 1.46896 * 109.47439 * 120.00412 * 2 1 3 11 11 C 1.46894 * 111.00112 * 278.58489 * 10 2 1 12 12 C 1.53004 * 109.47279 * 179.97438 * 11 10 2 13 13 C 1.52997 * 109.47281 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46959 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00112 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99618 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99787 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00210 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47397 * 90.00141 * 18 16 14 20 20 H 1.48497 * 109.47112 * 210.00037 * 18 16 14 21 21 H 1.48500 * 109.47079 * 329.99664 * 18 16 14 22 22 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47238 * 59.99165 * 1 2 3 24 24 H 1.09003 * 109.46987 * 299.99982 * 1 2 3 25 25 H 1.09000 * 109.47160 * 184.72713 * 4 2 1 26 26 H 1.08998 * 109.46784 * 304.71966 * 4 2 1 27 27 H 1.09004 * 110.67167 * 278.15924 * 6 5 4 28 28 H 1.09007 * 110.66869 * 41.28405 * 6 5 4 29 29 H 1.09000 * 110.72620 * 204.22767 * 7 6 5 30 30 H 1.09007 * 110.72195 * 80.94591 * 7 6 5 31 31 H 1.09002 * 110.30717 * 263.03383 * 8 7 6 32 32 H 1.09002 * 110.30735 * 140.87449 * 8 7 6 33 33 H 1.08993 * 109.91415 * 333.50816 * 9 5 4 34 34 H 1.09004 * 109.91485 * 94.60301 * 9 5 4 35 35 H 1.00903 * 111.00081 * 154.62319 * 10 2 1 36 36 H 1.08998 * 109.47012 * 299.99102 * 11 10 2 37 37 H 1.08994 * 109.47518 * 59.99868 * 11 10 2 38 38 H 1.08996 * 109.46721 * 300.00160 * 12 11 10 39 39 H 1.09006 * 109.47107 * 59.99753 * 12 11 10 40 40 H 1.08999 * 109.46802 * 299.99874 * 13 12 11 41 41 H 1.08997 * 109.46955 * 59.99910 * 13 12 11 42 42 H 0.96995 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 1.6456 0.0342 -2.4460 6 6 2.1802 1.4192 -2.4014 7 6 2.1395 1.8629 -3.8853 8 6 2.5285 0.5726 -4.6427 9 6 2.2107 -0.5769 -3.6686 10 7 2.0197 -0.6925 1.1993 11 6 2.0022 0.1994 2.3663 12 6 2.5172 -0.5558 3.5933 13 6 2.4996 0.3734 4.8086 14 6 3.0076 -0.3703 6.0170 15 1 3.3128 -1.4024 5.9269 16 6 3.0825 0.2669 7.2374 17 7 3.5253 -0.3823 8.2920 18 14 2.5552 2.0521 7.3929 19 1 1.1101 2.1140 7.7291 20 1 3.3419 2.7088 8.4676 21 1 2.7945 2.7529 6.1057 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 3.1266 -0.7950 -1.2080 26 1 1.6092 -1.7214 -1.2927 27 1 1.5421 2.0585 -1.7911 28 1 3.2036 1.4248 -2.0261 29 1 2.8664 2.6536 -4.0716 30 1 1.1365 2.1862 -4.1639 31 1 3.5915 0.5813 -4.8837 32 1 1.9347 0.4738 -5.5514 33 1 3.1237 -1.1198 -3.4244 34 1 1.4835 -1.2553 -4.1148 35 1 2.9427 -1.0708 1.0470 36 1 2.6418 1.0609 2.1747 37 1 0.9824 0.5376 2.5500 38 1 1.8774 -1.4172 3.7847 39 1 3.5371 -0.8943 3.4099 40 1 3.1398 1.2345 4.6169 41 1 1.4801 0.7123 4.9921 42 1 3.5784 0.0661 9.1504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:46 Heat of formation + Delta-G solvation = -35.466048 kcal Electronic energy + Delta-G solvation = -17195.524942 eV Core-core repulsion = 14594.598855 eV Total energy + Delta-G solvation = -2600.926087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19396 -38.11794 -35.88093 -34.24105 -32.58004 -30.61101 -29.70780 -28.13199 -26.54570 -23.95539 -22.56526 -21.95490 -21.66927 -20.71023 -18.91404 -17.25159 -17.06704 -16.80300 -16.34387 -15.72450 -15.55833 -15.10494 -14.87377 -14.68521 -14.18508 -13.88597 -13.52678 -13.44054 -13.11339 -12.90319 -12.69440 -12.61505 -12.52828 -12.27476 -12.06830 -11.93275 -11.85871 -11.71647 -11.45991 -11.43466 -11.38324 -11.21587 -10.77049 -9.44462 -9.35887 -8.30063 -6.34503 1.35666 1.37445 1.49687 2.36024 2.80959 3.05105 3.39404 3.70224 3.76033 3.96149 4.01726 4.16004 4.24021 4.33327 4.35201 4.38171 4.60348 4.64343 4.67790 4.78631 4.79361 4.82328 4.91861 4.93687 4.96911 5.05440 5.07857 5.10935 5.14313 5.19471 5.30429 5.44581 5.51042 5.60314 5.65693 5.91515 5.99752 6.13083 6.29139 6.46837 6.73839 7.30148 8.87073 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046836 B = 0.003557 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.683080 B = 7869.478686 C = 8064.146622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.088 3.912 3 H 0.039 0.961 4 C 0.056 3.944 5 N -0.521 5.521 6 C 0.027 3.973 7 C -0.121 4.121 8 C -0.128 4.128 9 C 0.032 3.968 10 N -0.691 5.691 11 C 0.073 3.927 12 C -0.090 4.090 13 C -0.010 4.010 14 C -0.535 4.535 15 H 0.029 0.971 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.955 3.045 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.246 1.246 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.342 0.658 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 5.182 -27.587 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 H 0.057 0.943 4 C -0.072 4.072 5 N -0.245 5.245 6 C -0.100 4.100 7 C -0.159 4.159 8 C -0.166 4.166 9 C -0.096 4.096 10 N -0.323 5.323 11 C -0.056 4.056 12 C -0.128 4.128 13 C -0.048 4.048 14 C -0.573 4.573 15 H 0.048 0.952 16 C -0.196 4.196 17 N -0.594 5.594 18 Si 0.778 3.222 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.169 1.169 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.160 0.840 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.753 4.895 -27.289 28.129 hybrid contribution 1.685 0.740 0.774 1.996 sum -3.068 5.635 -26.515 27.280 Atomic orbital electron populations 1.21624 0.93778 1.01814 1.00998 1.21514 0.96893 0.95395 0.88404 0.94304 1.22290 0.97422 0.98156 0.89365 1.64743 1.55550 1.02418 1.01823 1.23309 0.97925 0.90473 0.98326 1.22482 1.02582 0.97606 0.93206 1.22397 1.01929 0.93695 0.98572 1.22930 0.98411 0.97602 0.90671 1.60487 1.31252 1.36991 1.03560 1.21888 1.00499 0.93500 0.89718 1.21266 0.99819 0.98357 0.93401 1.19485 0.96194 0.95779 0.93308 1.21526 1.42887 0.98629 0.94216 0.95225 1.26082 0.94713 1.03548 0.95209 1.70077 1.48844 1.39480 1.01007 0.85591 0.78801 0.79027 0.78814 1.19074 1.20863 1.16936 0.92889 0.91092 0.94095 0.94820 0.90077 0.90345 0.94333 0.90032 0.90587 0.90907 0.89965 0.93881 0.89983 0.83986 0.95319 0.91325 0.93244 0.93458 0.96221 0.96318 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 9.26 71.98 0.67 -2.22 16 2 C 0.09 2.02 2.49 44.92 0.11 2.14 16 3 H 0.04 0.92 6.37 -2.38 -0.02 0.91 16 4 C 0.06 1.13 4.31 86.30 0.37 1.50 16 5 N -0.52 -9.46 4.79 -883.04 -4.23 -13.69 16 6 C 0.03 0.45 5.33 86.65 0.46 0.92 16 7 C -0.12 -1.53 7.06 31.80 0.22 -1.30 16 8 C -0.13 -1.49 6.93 31.47 0.22 -1.27 16 9 C 0.03 0.47 6.70 86.44 0.58 1.05 16 10 N -0.69 -18.95 6.30 -491.59 -3.10 -22.04 16 11 C 0.07 2.34 5.49 86.31 0.47 2.81 16 12 C -0.09 -3.64 5.41 30.59 0.17 -3.47 16 13 C -0.01 -0.47 4.04 29.85 0.12 -0.34 16 14 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 15 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 16 C 0.00 0.05 5.47 84.66 0.46 0.51 16 17 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 18 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.25 -10.71 6.54 99.48 0.65 -10.05 16 22 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 1.51 7.74 -2.39 -0.02 1.49 16 24 H 0.04 1.01 7.24 -2.39 -0.02 0.99 16 25 H 0.03 0.67 7.86 -2.39 -0.02 0.65 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.08 1.37 7.55 -2.39 -0.02 1.35 16 28 H 0.04 0.68 8.02 -2.38 -0.02 0.66 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.04 0.64 7.66 -2.39 -0.02 0.63 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.34 8.79 8.34 -89.69 -0.75 8.04 16 36 H 0.03 0.89 8.06 -2.39 -0.02 0.87 16 37 H 0.07 2.20 7.20 -2.39 -0.02 2.19 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 41 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 42 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -65.92 325.81 -0.89 -66.81 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.15 Total: 14.16 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 4.10 Total: -31.28 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -7.03 Total: -96.60 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -65.92 -0.89 -66.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.347 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds