Wall clock time and date at job start Mon Mar 30 2020 03:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47043 * 2 1 4 4 C 1.46893 * 110.99854 * 160.50938 * 3 2 1 5 5 C 1.52995 * 109.47247 * 288.26698 * 4 3 2 6 6 C 1.46898 * 110.99522 * 284.46305 * 3 2 1 7 7 C 1.53116 * 109.52679 * 294.68143 * 6 3 2 8 8 C 1.53034 * 109.28472 * 182.44257 * 7 6 3 9 9 N 1.46853 * 109.52224 * 59.17949 * 8 7 6 10 10 C 1.46901 * 110.99942 * 174.16443 * 9 8 7 11 11 C 1.50701 * 109.46928 * 294.20682 * 10 9 8 12 12 H 1.07995 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99650 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00486 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99930 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46952 * 60.00184 * 15 13 11 17 17 H 1.48503 * 109.47179 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47133 * 300.00462 * 15 13 11 19 19 C 1.46847 * 111.19618 * 298.26049 * 9 8 7 20 20 C 1.53045 * 109.52225 * 61.74198 * 19 9 8 21 21 H 1.08996 * 109.46996 * 65.97048 * 1 2 3 22 22 H 1.09004 * 109.47035 * 185.96532 * 1 2 3 23 23 H 1.08991 * 109.47211 * 305.96643 * 1 2 3 24 24 H 1.08998 * 109.46873 * 239.99945 * 2 1 3 25 25 H 1.09003 * 109.46815 * 119.99746 * 2 1 3 26 26 H 1.09008 * 109.47368 * 48.26890 * 4 3 2 27 27 H 1.09003 * 109.47192 * 168.26398 * 4 3 2 28 28 H 1.09001 * 109.47246 * 60.10926 * 5 4 3 29 29 H 1.09006 * 109.47050 * 180.10973 * 5 4 3 30 30 H 1.08994 * 109.47015 * 300.10584 * 5 4 3 31 31 H 1.09003 * 109.52814 * 54.87800 * 6 3 2 32 32 H 1.09005 * 109.50439 * 302.38745 * 7 6 3 33 33 H 1.09010 * 109.50233 * 62.49906 * 7 6 3 34 34 H 1.08999 * 109.46152 * 299.16989 * 8 7 6 35 35 H 1.08993 * 109.45989 * 179.19215 * 8 7 6 36 36 H 1.08996 * 109.47077 * 54.21590 * 10 9 8 37 37 H 1.09005 * 109.46894 * 174.21066 * 10 9 8 38 38 H 0.96991 * 120.00358 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.46709 * 301.72494 * 19 9 8 40 40 H 1.09002 * 109.45484 * 181.74877 * 19 9 8 41 41 H 1.09004 * 109.49669 * 180.87849 * 20 19 9 42 42 H 1.08997 * 109.50265 * 60.76278 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4140 1.4504 0.4576 5 6 3.4706 1.1765 1.9617 6 6 1.8722 1.9954 -1.3280 7 6 2.7796 1.2724 -2.3272 8 6 2.6676 1.9509 -3.6943 9 7 3.0639 3.3601 -3.5767 10 6 3.1016 4.0081 -4.8945 11 6 4.1958 3.3906 -5.7268 12 1 4.8021 2.5960 -5.3178 13 6 4.4219 3.8394 -7.0106 14 7 3.6832 4.8067 -7.5089 15 14 5.7777 3.0735 -8.0426 16 1 5.5113 1.6224 -8.2116 17 1 5.8158 3.7287 -9.3747 18 1 7.0839 3.2610 -7.3617 19 6 2.1774 4.0861 -2.6584 20 6 2.2748 3.4712 -1.2603 21 1 -0.3633 0.4185 -0.9386 22 1 -0.3633 -1.0221 0.1068 23 1 -0.3633 0.6035 0.8317 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 4.0052 0.7021 -0.0705 27 1 3.8173 2.4422 0.2534 28 1 3.0691 0.1839 2.1657 29 1 4.5051 1.2270 2.3016 30 1 2.8779 1.9236 2.4896 31 1 0.8347 1.9154 -1.6526 32 1 3.8122 1.3192 -1.9812 33 1 2.4704 0.2305 -2.4117 34 1 1.6376 1.8916 -4.0459 35 1 3.3234 1.4473 -4.4044 36 1 2.1430 3.8705 -5.3946 37 1 3.2970 5.0733 -4.7701 38 1 3.8420 5.1222 -8.4122 39 1 1.1497 4.0167 -3.0149 40 1 2.4772 5.1332 -2.6162 41 1 1.6048 4.0004 -0.5826 42 1 3.2993 3.5527 -0.8975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052049942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:58 Heat of formation + Delta-G solvation = -1.843819 kcal Electronic energy + Delta-G solvation = -18261.779085 eV Core-core repulsion = 15662.310968 eV Total energy + Delta-G solvation = -2599.468118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46222 -36.69637 -33.12162 -31.89336 -31.57178 -30.28677 -28.42413 -26.34843 -23.57865 -23.17224 -22.57733 -21.52735 -20.22308 -18.53014 -16.29924 -16.13574 -15.37897 -14.89320 -14.64711 -14.21749 -14.12346 -13.96968 -13.40919 -13.13056 -12.64632 -12.36365 -12.13338 -11.94623 -11.81585 -11.63280 -11.56042 -11.44516 -11.20433 -10.91752 -10.76010 -10.60127 -10.33553 -10.29257 -10.15075 -10.03169 -9.63925 -9.17595 -8.42175 -8.08672 -7.18735 -6.01427 -4.02837 3.33626 3.37666 3.40615 3.96958 4.43200 4.87116 4.95795 5.07079 5.18385 5.23258 5.31045 5.34123 5.45620 5.49109 5.51010 5.64741 5.68889 5.74340 5.78532 5.90995 5.95863 6.01704 6.09562 6.12125 6.18736 6.21956 6.25741 6.37748 6.47702 6.53230 6.71990 6.74453 7.22797 7.26141 7.34167 7.38718 7.82020 8.12714 8.24774 8.58817 9.04667 9.61298 11.09451 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035803 B = 0.005159 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.874401 B = 5425.931197 C = 5512.044288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 N -0.533 5.533 4 C 0.042 3.958 5 C -0.145 4.145 6 C 0.085 3.915 7 C -0.147 4.147 8 C 0.071 3.929 9 N -0.537 5.537 10 C 0.193 3.807 11 C -0.507 4.507 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.056 3.944 20 C -0.105 4.105 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.081 0.919 36 H -0.010 1.010 37 H 0.030 0.970 38 H 0.262 0.738 39 H 0.020 0.980 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 -7.703 15.380 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 N -0.256 5.256 4 C -0.086 4.086 5 C -0.203 4.203 6 C -0.024 4.024 7 C -0.187 4.187 8 C -0.059 4.059 9 N -0.262 5.262 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.143 4.143 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.100 0.900 36 H 0.007 0.993 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.918 -7.307 15.752 17.801 hybrid contribution 0.359 -0.841 -1.659 1.894 sum -3.559 -8.148 14.093 16.664 Atomic orbital electron populations 1.21742 0.95224 1.00993 1.02294 1.22153 0.95995 0.89671 1.00763 1.62332 1.19987 1.17378 1.25927 1.22163 0.89101 1.02037 0.95271 1.21789 1.01071 1.01548 0.95890 1.21792 0.99203 0.94652 0.86716 1.22287 1.00752 0.98542 0.97093 1.21829 0.98214 0.90564 0.95251 1.62041 1.49099 1.01246 1.13781 1.19695 0.95871 0.94749 0.82857 1.21126 1.16489 1.19451 0.97513 0.92011 1.24985 0.96556 0.95211 0.97824 1.69947 1.39758 1.27790 1.16383 0.86574 0.82406 0.79264 0.79233 1.20333 1.21340 1.20175 1.22001 0.94659 0.98192 0.92492 1.21670 1.01748 0.93987 0.96908 0.92858 0.92812 0.92063 0.94234 0.91227 0.94733 0.89960 0.93142 0.92662 0.92131 0.90547 0.91273 0.92552 0.96464 0.90015 0.99257 0.95198 0.92886 0.96174 0.91257 0.91779 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.92 37.16 0.37 -1.12 16 2 C 0.04 0.47 5.43 -3.82 -0.02 0.45 16 3 N -0.53 -6.73 4.38 -226.50 -0.99 -7.72 16 4 C 0.04 0.50 4.59 -3.83 -0.02 0.48 16 5 C -0.15 -1.44 9.97 37.15 0.37 -1.07 16 6 C 0.08 1.22 2.21 -67.59 -0.15 1.07 16 7 C -0.15 -2.35 4.75 -26.65 -0.13 -2.47 16 8 C 0.07 1.40 5.30 -3.83 -0.02 1.38 16 9 N -0.54 -11.74 4.65 -236.11 -1.10 -12.83 16 10 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 11 C -0.51 -14.38 8.43 -34.44 -0.29 -14.67 16 12 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 15 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 20 C -0.11 -1.60 5.29 -26.65 -0.14 -1.74 16 21 H 0.05 0.59 7.05 -51.93 -0.37 0.22 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.47 5.95 -51.93 -0.31 0.16 16 25 H 0.07 0.71 6.23 -51.93 -0.32 0.39 16 26 H 0.03 0.43 7.08 -51.92 -0.37 0.06 16 27 H 0.08 1.06 5.65 -51.93 -0.29 0.76 16 28 H 0.05 0.47 6.53 -51.93 -0.34 0.13 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.14 6.84 -51.93 -0.36 0.79 16 32 H 0.07 1.15 6.63 -51.93 -0.34 0.80 16 33 H 0.06 0.83 6.38 -51.92 -0.33 0.49 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 1.77 6.70 -51.93 -0.35 1.42 16 36 H -0.01 -0.29 8.12 -51.93 -0.42 -0.72 16 37 H 0.03 0.84 7.99 -51.93 -0.41 0.43 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 1.28 8.02 -51.93 -0.42 0.86 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.09 6.03 -51.93 -0.31 0.78 16 LS Contribution 312.31 15.07 4.71 4.71 Total: -1.00 -29.20 312.31 -9.25 -38.45 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.41 Total: -3.06 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -0.17 Total: -10.09 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.35 Total: -46.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.20 -9.25 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052049942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.603 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds