Wall clock time and date at job start Mon Mar 30 2020 03:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47043 * 2 1 4 4 C 1.46893 * 110.99854 * 160.50938 * 3 2 1 5 5 C 1.52995 * 109.47247 * 288.26698 * 4 3 2 6 6 C 1.46898 * 110.99522 * 284.46305 * 3 2 1 7 7 C 1.53116 * 109.52679 * 294.68143 * 6 3 2 8 8 C 1.53034 * 109.28472 * 182.44257 * 7 6 3 9 9 N 1.46853 * 109.52224 * 59.17949 * 8 7 6 10 10 C 1.46901 * 110.99942 * 174.16443 * 9 8 7 11 11 C 1.50701 * 109.46928 * 294.20682 * 10 9 8 12 12 H 1.07995 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99650 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00486 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99930 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46952 * 60.00184 * 15 13 11 17 17 H 1.48503 * 109.47179 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47133 * 300.00462 * 15 13 11 19 19 C 1.46847 * 111.19618 * 298.26049 * 9 8 7 20 20 C 1.53045 * 109.52225 * 61.74198 * 19 9 8 21 21 H 1.08996 * 109.46996 * 65.97048 * 1 2 3 22 22 H 1.09004 * 109.47035 * 185.96532 * 1 2 3 23 23 H 1.08991 * 109.47211 * 305.96643 * 1 2 3 24 24 H 1.08998 * 109.46873 * 239.99945 * 2 1 3 25 25 H 1.09003 * 109.46815 * 119.99746 * 2 1 3 26 26 H 1.09008 * 109.47368 * 48.26890 * 4 3 2 27 27 H 1.09003 * 109.47192 * 168.26398 * 4 3 2 28 28 H 1.09001 * 109.47246 * 60.10926 * 5 4 3 29 29 H 1.09006 * 109.47050 * 180.10973 * 5 4 3 30 30 H 1.08994 * 109.47015 * 300.10584 * 5 4 3 31 31 H 1.09003 * 109.52814 * 54.87800 * 6 3 2 32 32 H 1.09005 * 109.50439 * 302.38745 * 7 6 3 33 33 H 1.09010 * 109.50233 * 62.49906 * 7 6 3 34 34 H 1.08999 * 109.46152 * 299.16989 * 8 7 6 35 35 H 1.08993 * 109.45989 * 179.19215 * 8 7 6 36 36 H 1.08996 * 109.47077 * 54.21590 * 10 9 8 37 37 H 1.09005 * 109.46894 * 174.21066 * 10 9 8 38 38 H 0.96991 * 120.00358 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.46709 * 301.72494 * 19 9 8 40 40 H 1.09002 * 109.45484 * 181.74877 * 19 9 8 41 41 H 1.09004 * 109.49669 * 180.87849 * 20 19 9 42 42 H 1.08997 * 109.50265 * 60.76278 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4140 1.4504 0.4576 5 6 3.4706 1.1765 1.9617 6 6 1.8722 1.9954 -1.3280 7 6 2.7796 1.2724 -2.3272 8 6 2.6676 1.9509 -3.6943 9 7 3.0639 3.3601 -3.5767 10 6 3.1016 4.0081 -4.8945 11 6 4.1958 3.3906 -5.7268 12 1 4.8021 2.5960 -5.3178 13 6 4.4219 3.8394 -7.0106 14 7 3.6832 4.8067 -7.5089 15 14 5.7777 3.0735 -8.0426 16 1 5.5113 1.6224 -8.2116 17 1 5.8158 3.7287 -9.3747 18 1 7.0839 3.2610 -7.3617 19 6 2.1774 4.0861 -2.6584 20 6 2.2748 3.4712 -1.2603 21 1 -0.3633 0.4185 -0.9386 22 1 -0.3633 -1.0221 0.1068 23 1 -0.3633 0.6035 0.8317 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 4.0052 0.7021 -0.0705 27 1 3.8173 2.4422 0.2534 28 1 3.0691 0.1839 2.1657 29 1 4.5051 1.2270 2.3016 30 1 2.8779 1.9236 2.4896 31 1 0.8347 1.9154 -1.6526 32 1 3.8122 1.3192 -1.9812 33 1 2.4704 0.2305 -2.4117 34 1 1.6376 1.8916 -4.0459 35 1 3.3234 1.4473 -4.4044 36 1 2.1430 3.8705 -5.3946 37 1 3.2970 5.0733 -4.7701 38 1 3.8420 5.1222 -8.4122 39 1 1.1497 4.0167 -3.0149 40 1 2.4772 5.1332 -2.6162 41 1 1.6048 4.0004 -0.5826 42 1 3.2993 3.5527 -0.8975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052049942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:58 Heat of formation + Delta-G solvation = -20.954225 kcal Electronic energy + Delta-G solvation = -18262.607775 eV Core-core repulsion = 15662.310968 eV Total energy + Delta-G solvation = -2600.296807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72455 -38.13486 -35.07834 -33.17836 -32.76769 -31.71658 -29.76054 -28.08654 -25.13136 -24.41053 -23.74368 -23.11100 -21.65405 -19.76699 -18.47088 -17.39967 -16.63626 -16.40376 -15.99568 -15.73883 -15.38796 -15.25100 -14.91992 -14.53402 -14.13673 -13.68173 -13.56748 -13.29602 -13.06394 -12.93988 -12.77415 -12.60354 -12.50358 -12.43596 -12.33217 -12.15807 -12.00727 -11.75600 -11.44458 -11.35596 -11.17329 -11.07764 -10.62384 -9.14913 -9.01487 -8.21792 -6.32425 1.39468 1.42887 1.50902 2.38958 2.94483 3.10196 3.29512 3.81925 3.91316 4.04665 4.17850 4.28955 4.35015 4.36762 4.42662 4.57331 4.58427 4.66661 4.69371 4.72595 4.81369 4.87986 4.93852 5.01385 5.09752 5.10435 5.12402 5.16137 5.18015 5.25158 5.31819 5.40969 5.42278 5.46448 5.63463 6.03975 6.19137 6.25799 6.35335 6.64792 6.83512 7.37401 8.89275 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035803 B = 0.005159 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.874401 B = 5425.931197 C = 5512.044288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 N -0.530 5.530 4 C 0.040 3.960 5 C -0.138 4.138 6 C 0.092 3.908 7 C -0.134 4.134 8 C 0.072 3.928 9 N -0.542 5.542 10 C 0.208 3.792 11 C -0.525 4.525 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.970 3.030 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.054 3.946 20 C -0.094 4.094 21 H 0.041 0.959 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.034 0.966 25 H 0.085 0.915 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.011 0.989 35 H 0.058 0.942 36 H -0.041 1.041 37 H 0.004 0.996 38 H 0.265 0.735 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -9.207 16.830 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 N -0.254 5.254 4 C -0.088 4.088 5 C -0.196 4.196 6 C -0.017 4.017 7 C -0.173 4.173 8 C -0.057 4.057 9 N -0.267 5.267 10 C 0.081 3.919 11 C -0.563 4.563 12 H 0.079 0.921 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.193 1.193 19 C -0.075 4.075 20 C -0.132 4.132 21 H 0.060 0.940 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.103 0.897 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.029 0.971 35 H 0.077 0.923 36 H -0.023 1.023 37 H 0.022 0.978 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.467 -8.825 17.235 19.671 hybrid contribution 0.175 -0.362 -2.075 2.114 sum -3.292 -9.187 15.160 18.029 Atomic orbital electron populations 1.21718 0.94469 1.02029 1.01669 1.22251 0.96614 0.88667 1.01230 1.62373 1.20497 1.18418 1.24065 1.22217 0.88488 1.01349 0.96749 1.21731 1.01904 1.01905 0.94039 1.21642 0.98555 0.94022 0.87469 1.22174 1.01063 0.99190 0.94850 1.21816 0.97068 0.89412 0.97374 1.61984 1.50716 1.02342 1.11686 1.19357 0.93954 0.93592 0.84965 1.21416 1.16960 1.19632 0.98289 0.92051 1.25922 0.99034 0.95538 0.99095 1.70079 1.41451 1.29079 1.16913 0.85433 0.79150 0.78648 0.77369 1.19261 1.20688 1.19287 1.22099 0.93720 0.98049 0.93630 1.21571 1.02329 0.94628 0.94645 0.93972 0.91122 0.92038 0.94775 0.89697 0.95196 0.90962 0.92348 0.91566 0.92224 0.90694 0.91694 0.90870 0.97086 0.92320 1.02323 0.97790 0.92628 0.96412 0.91684 0.89801 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.92 71.98 0.71 -1.83 16 2 C 0.04 0.79 5.43 86.31 0.47 1.26 16 3 N -0.53 -12.15 4.38 -870.52 -3.82 -15.97 16 4 C 0.04 0.86 4.59 86.30 0.40 1.26 16 5 C -0.14 -2.35 9.97 71.98 0.72 -1.63 16 6 C 0.09 2.52 2.21 44.99 0.10 2.61 16 7 C -0.13 -4.12 4.75 30.64 0.15 -3.97 16 8 C 0.07 2.90 5.30 86.32 0.46 3.36 16 9 N -0.54 -24.31 4.65 -900.91 -4.19 -28.50 16 10 C 0.21 11.47 4.72 85.56 0.40 11.88 16 11 C -0.52 -30.46 8.43 25.60 0.22 -30.24 16 12 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 13 C 0.00 0.12 5.46 84.65 0.46 0.59 16 14 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 15 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C 0.05 2.00 5.46 86.33 0.47 2.47 16 20 C -0.09 -2.74 5.29 30.65 0.16 -2.58 16 21 H 0.04 0.85 7.05 -2.39 -0.02 0.83 16 22 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.03 0.72 5.95 -2.39 -0.01 0.71 16 25 H 0.08 1.45 6.23 -2.39 -0.01 1.43 16 26 H 0.03 0.68 7.08 -2.38 -0.02 0.66 16 27 H 0.07 1.72 5.65 -2.39 -0.01 1.71 16 28 H 0.06 0.90 6.53 -2.39 -0.02 0.89 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 2.12 6.84 -2.39 -0.02 2.10 16 32 H 0.06 2.08 6.63 -2.38 -0.02 2.06 16 33 H 0.07 2.03 6.38 -2.38 -0.02 2.01 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 2.60 6.70 -2.39 -0.02 2.59 16 36 H -0.04 -2.46 8.12 -2.39 -0.02 -2.47 16 37 H 0.00 0.24 7.99 -2.38 -0.02 0.22 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 2.44 8.02 -2.39 -0.02 2.42 16 41 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.07 2.07 6.03 -2.39 -0.01 2.06 16 Total: -1.00 -63.28 312.31 -0.01 -63.29 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.97 Total: 8.09 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.71 Total: -16.83 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -7.72 Total: -101.38 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.28 -0.01 -63.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052049942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.336 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds