Wall clock time and date at job start Mon Mar 30 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.53003 * 109.47147 * 240.00280 * 2 1 3 5 5 N 1.46901 * 109.47159 * 64.99978 * 4 2 1 6 6 C 1.46898 * 111.00048 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.46933 * 324.99994 * 6 5 4 8 8 C 1.52999 * 109.47286 * 84.99966 * 6 5 4 9 9 C 1.50694 * 109.47149 * 205.00280 * 6 5 4 10 10 H 1.08006 * 120.00232 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00054 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00214 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00335 * 179.97438 * 11 9 6 14 14 H 1.48510 * 109.47017 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47385 * 120.00125 * 13 11 9 16 16 H 1.48504 * 109.47660 * 240.00492 * 13 11 9 17 17 C 1.52995 * 109.46878 * 120.00343 * 2 1 3 18 18 N 1.46899 * 109.46968 * 185.14234 * 17 2 1 19 19 C 1.48533 * 111.00359 * 58.44388 * 18 17 2 20 20 C 1.54933 * 103.22760 * 159.72258 * 19 18 17 21 21 C 1.54601 * 102.92198 * 322.58595 * 20 19 18 22 22 C 1.47907 * 110.99890 * 175.84343 * 18 17 2 23 23 H 1.09003 * 109.47211 * 174.87178 * 1 2 3 24 24 H 1.08996 * 109.47676 * 294.86984 * 1 2 3 25 25 H 1.09008 * 109.46908 * 54.87751 * 1 2 3 26 26 H 1.08999 * 109.46830 * 304.99785 * 4 2 1 27 27 H 1.08998 * 109.46903 * 184.99982 * 4 2 1 28 28 H 1.00897 * 111.00021 * 303.95214 * 5 4 2 29 29 H 1.09005 * 109.47137 * 300.00437 * 8 6 5 30 30 H 1.08994 * 109.47205 * 179.97438 * 8 6 5 31 31 H 1.09001 * 109.46731 * 59.99834 * 8 6 5 32 32 H 0.97003 * 120.00534 * 179.97438 * 12 11 9 33 33 H 1.08998 * 109.47564 * 305.14196 * 17 2 1 34 34 H 1.08995 * 109.47423 * 65.14209 * 17 2 1 35 35 H 1.08994 * 110.66529 * 278.15657 * 19 18 17 36 36 H 1.08997 * 110.66087 * 41.28708 * 19 18 17 37 37 H 1.09008 * 110.72473 * 204.23264 * 20 19 18 38 38 H 1.09000 * 110.72855 * 80.94410 * 20 19 18 39 39 H 1.09005 * 110.30705 * 263.04470 * 21 20 19 40 40 H 1.09000 * 110.30918 * 140.87735 * 21 20 19 41 41 H 1.08989 * 109.91680 * 333.50427 * 22 18 17 42 42 H 1.08998 * 109.91802 * 94.60616 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6514 0.0375 -2.4457 6 6 2.1258 -0.6263 -3.6672 7 1 3.0896 -1.0973 -3.4738 8 6 1.1142 -1.6916 -4.0945 9 6 2.2765 0.3931 -4.7667 10 1 2.0436 1.4305 -4.5770 11 6 2.7128 0.0016 -6.0147 12 7 2.9968 -1.2615 -6.2457 13 14 2.8989 1.2650 -7.3779 14 1 2.5179 2.6059 -6.8656 15 1 4.3110 1.2939 -7.8367 16 1 2.0164 0.9001 -8.5152 17 6 2.0399 -0.7213 1.2492 18 7 3.5037 -0.6147 1.3129 19 6 3.9334 0.8068 1.3377 20 6 5.3663 0.7339 1.9225 21 6 5.2500 -0.3842 2.9839 22 6 4.0251 -1.2155 2.5599 23 1 -0.3634 -1.0236 -0.0919 24 1 -0.3634 0.4322 0.9323 25 1 -0.3633 0.5913 -0.8406 26 1 1.6054 -1.7197 -1.2952 27 1 3.1263 -0.7994 -1.2056 28 1 0.6529 0.1794 -2.4753 29 1 1.0051 -2.4290 -3.2991 30 1 1.4659 -2.1839 -5.0011 31 1 0.1504 -1.2206 -4.2878 32 1 3.3034 -1.5371 -7.1238 33 1 1.6034 -0.2635 2.1368 34 1 1.7538 -1.7721 1.2043 35 1 3.9499 1.2214 0.3298 36 1 3.2828 1.3940 1.9858 37 1 5.6416 1.6804 2.3879 38 1 6.0847 0.4593 1.1501 39 1 5.0906 0.0474 3.9721 40 1 6.1470 -1.0034 2.9808 41 1 3.2627 -1.1766 3.3377 42 1 4.3188 -2.2495 2.3793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062071815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:06 Heat of formation + Delta-G solvation = -10.276677 kcal Electronic energy + Delta-G solvation = -17880.714957 eV Core-core repulsion = 15280.881164 eV Total energy + Delta-G solvation = -2599.833794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.11194 -36.61974 -34.35340 -32.08675 -30.69568 -28.85595 -27.99816 -25.62569 -25.06341 -23.74954 -21.40697 -20.80230 -20.02013 -19.24287 -16.26150 -16.07298 -15.95058 -15.00689 -14.67717 -14.11842 -13.69460 -13.44707 -13.24209 -12.86475 -12.63912 -12.50174 -11.99234 -11.79467 -11.55829 -11.53176 -11.37594 -11.10895 -10.94712 -10.78213 -10.73260 -10.61425 -10.41443 -10.22737 -10.16307 -10.00463 -9.67571 -8.86880 -8.29608 -8.28079 -7.06068 -5.90004 -3.92768 3.36517 3.43923 3.49491 4.04995 4.50845 4.62578 4.69797 4.90454 5.06816 5.23816 5.27220 5.41371 5.44832 5.48568 5.58516 5.66906 5.71591 5.73157 5.81070 5.83783 5.93516 6.00869 6.13849 6.17844 6.24982 6.32834 6.41545 6.70530 6.76475 6.84401 6.95926 6.99363 7.15308 7.22744 7.52511 7.83576 7.99146 8.39930 8.69318 8.76633 9.15159 9.72374 11.17101 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027477 B = 0.005145 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.792073 B = 5440.688925 C = 5899.853178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.077 0.923 4 C 0.073 3.927 5 N -0.686 5.686 6 C 0.211 3.789 7 H 0.033 0.967 8 C -0.167 4.167 9 C -0.491 4.491 10 H 0.062 0.938 11 C 0.053 3.947 12 N -0.898 5.898 13 Si 0.895 3.105 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.287 1.287 17 C 0.055 3.945 18 N -0.512 5.512 19 C 0.034 3.966 20 C -0.125 4.125 21 C -0.130 4.130 22 C 0.035 3.965 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.011 0.989 27 H 0.075 0.925 28 H 0.320 0.680 29 H 0.004 0.996 30 H 0.087 0.913 31 H 0.025 0.975 32 H 0.258 0.742 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.039 0.961 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 1.233 17.439 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.056 4.056 5 N -0.316 5.316 6 C 0.103 3.897 7 H 0.051 0.949 8 C -0.227 4.227 9 C -0.530 4.530 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.073 4.073 18 N -0.236 5.236 19 C -0.093 4.093 20 C -0.163 4.163 21 C -0.169 4.169 22 C -0.093 4.093 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.023 0.977 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.804 1.269 16.867 16.933 hybrid contribution -0.925 0.097 -0.127 0.939 sum -0.121 1.367 16.740 16.796 Atomic orbital electron populations 1.21816 0.95656 1.01597 1.01385 1.21230 0.94907 1.00424 0.94286 0.90451 1.21848 1.00882 0.93545 0.89374 1.60830 1.17806 1.50550 1.02440 1.19141 0.93461 0.91290 0.85794 0.94927 1.22415 0.99209 0.99385 1.01664 1.21228 1.42754 0.94665 0.94336 0.92021 1.24955 0.95836 0.95268 0.98589 1.69901 1.46572 1.15051 1.22334 0.86484 0.77505 0.81771 0.81865 1.19787 1.21203 1.21300 1.22341 0.87114 1.00927 0.96941 1.64757 1.10822 1.13575 1.34460 1.23260 0.94839 0.89595 1.01644 1.22492 0.97471 0.98089 0.98237 1.22387 0.98344 0.97529 0.98593 1.22853 0.96066 0.99545 0.90872 0.93105 0.93475 0.91777 0.97038 0.90624 0.86278 0.97701 0.89412 0.95566 0.93247 0.95232 0.90991 0.89070 0.94175 0.91353 0.90539 0.91924 0.91171 0.94278 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.84 37.16 0.33 -1.62 16 2 C -0.09 -1.33 2.42 -90.62 -0.22 -1.55 16 3 H 0.08 1.21 6.63 -51.93 -0.34 0.86 16 4 C 0.07 1.38 4.89 -3.82 -0.02 1.36 16 5 N -0.69 -15.04 6.23 -107.96 -0.67 -15.72 16 6 C 0.21 5.50 2.57 -68.87 -0.18 5.32 16 7 H 0.03 0.94 7.80 -51.93 -0.40 0.54 16 8 C -0.17 -4.18 8.94 37.16 0.33 -3.85 16 9 C -0.49 -13.96 8.84 -34.44 -0.30 -14.27 16 10 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 11 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 12 N -0.90 -26.38 11.32 55.43 0.63 -25.75 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.06 0.73 4.22 -3.83 -0.02 0.71 16 18 N -0.51 -6.88 4.73 -230.47 -1.09 -7.97 16 19 C 0.03 0.43 5.34 -1.90 -0.01 0.42 16 20 C -0.12 -1.33 7.06 -24.87 -0.18 -1.51 16 21 C -0.13 -1.26 6.93 -25.37 -0.18 -1.44 16 22 C 0.03 0.39 6.70 -2.75 -0.02 0.37 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.90 6.92 -51.92 -0.36 0.54 16 26 H 0.01 0.22 7.44 -51.93 -0.39 -0.16 16 27 H 0.08 1.56 7.54 -51.93 -0.39 1.17 16 28 H 0.32 6.67 6.84 -39.29 -0.27 6.40 16 29 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.03 0.35 7.97 -51.93 -0.41 -0.06 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.31 7.54 -51.93 -0.39 0.91 16 36 H 0.04 0.47 8.01 -51.93 -0.42 0.06 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.40 7.67 -51.94 -0.40 0.00 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -29.19 322.46 -9.67 -38.87 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.83 Total: 3.43 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.55 Total: -14.63 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -1.14 Total: -49.44 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.19 -9.67 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062071815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.589 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds