Wall clock time and date at job start Mon Mar 30 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.53003 * 109.47147 * 240.00280 * 2 1 3 5 5 N 1.46901 * 109.47159 * 64.99978 * 4 2 1 6 6 C 1.46898 * 111.00048 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.46933 * 324.99994 * 6 5 4 8 8 C 1.52999 * 109.47286 * 84.99966 * 6 5 4 9 9 C 1.50694 * 109.47149 * 205.00280 * 6 5 4 10 10 H 1.08006 * 120.00232 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00054 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00214 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00335 * 179.97438 * 11 9 6 14 14 H 1.48510 * 109.47017 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47385 * 120.00125 * 13 11 9 16 16 H 1.48504 * 109.47660 * 240.00492 * 13 11 9 17 17 C 1.52995 * 109.46878 * 120.00343 * 2 1 3 18 18 N 1.46899 * 109.46968 * 185.14234 * 17 2 1 19 19 C 1.48533 * 111.00359 * 58.44388 * 18 17 2 20 20 C 1.54933 * 103.22760 * 159.72258 * 19 18 17 21 21 C 1.54601 * 102.92198 * 322.58595 * 20 19 18 22 22 C 1.47907 * 110.99890 * 175.84343 * 18 17 2 23 23 H 1.09003 * 109.47211 * 174.87178 * 1 2 3 24 24 H 1.08996 * 109.47676 * 294.86984 * 1 2 3 25 25 H 1.09008 * 109.46908 * 54.87751 * 1 2 3 26 26 H 1.08999 * 109.46830 * 304.99785 * 4 2 1 27 27 H 1.08998 * 109.46903 * 184.99982 * 4 2 1 28 28 H 1.00897 * 111.00021 * 303.95214 * 5 4 2 29 29 H 1.09005 * 109.47137 * 300.00437 * 8 6 5 30 30 H 1.08994 * 109.47205 * 179.97438 * 8 6 5 31 31 H 1.09001 * 109.46731 * 59.99834 * 8 6 5 32 32 H 0.97003 * 120.00534 * 179.97438 * 12 11 9 33 33 H 1.08998 * 109.47564 * 305.14196 * 17 2 1 34 34 H 1.08995 * 109.47423 * 65.14209 * 17 2 1 35 35 H 1.08994 * 110.66529 * 278.15657 * 19 18 17 36 36 H 1.08997 * 110.66087 * 41.28708 * 19 18 17 37 37 H 1.09008 * 110.72473 * 204.23264 * 20 19 18 38 38 H 1.09000 * 110.72855 * 80.94410 * 20 19 18 39 39 H 1.09005 * 110.30705 * 263.04470 * 21 20 19 40 40 H 1.09000 * 110.30918 * 140.87735 * 21 20 19 41 41 H 1.08989 * 109.91680 * 333.50427 * 22 18 17 42 42 H 1.08998 * 109.91802 * 94.60616 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6514 0.0375 -2.4457 6 6 2.1258 -0.6263 -3.6672 7 1 3.0896 -1.0973 -3.4738 8 6 1.1142 -1.6916 -4.0945 9 6 2.2765 0.3931 -4.7667 10 1 2.0436 1.4305 -4.5770 11 6 2.7128 0.0016 -6.0147 12 7 2.9968 -1.2615 -6.2457 13 14 2.8989 1.2650 -7.3779 14 1 2.5179 2.6059 -6.8656 15 1 4.3110 1.2939 -7.8367 16 1 2.0164 0.9001 -8.5152 17 6 2.0399 -0.7213 1.2492 18 7 3.5037 -0.6147 1.3129 19 6 3.9334 0.8068 1.3377 20 6 5.3663 0.7339 1.9225 21 6 5.2500 -0.3842 2.9839 22 6 4.0251 -1.2155 2.5599 23 1 -0.3634 -1.0236 -0.0919 24 1 -0.3634 0.4322 0.9323 25 1 -0.3633 0.5913 -0.8406 26 1 1.6054 -1.7197 -1.2952 27 1 3.1263 -0.7994 -1.2056 28 1 0.6529 0.1794 -2.4753 29 1 1.0051 -2.4290 -3.2991 30 1 1.4659 -2.1839 -5.0011 31 1 0.1504 -1.2206 -4.2878 32 1 3.3034 -1.5371 -7.1238 33 1 1.6034 -0.2635 2.1368 34 1 1.7538 -1.7721 1.2043 35 1 3.9499 1.2214 0.3298 36 1 3.2828 1.3940 1.9858 37 1 5.6416 1.6804 2.3879 38 1 6.0847 0.4593 1.1501 39 1 5.0906 0.0474 3.9721 40 1 6.1470 -1.0034 2.9808 41 1 3.2627 -1.1766 3.3377 42 1 4.3188 -2.2495 2.3793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062071815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:06 Heat of formation + Delta-G solvation = -29.198421 kcal Electronic energy + Delta-G solvation = -17881.535466 eV Core-core repulsion = 15280.881164 eV Total energy + Delta-G solvation = -2600.654302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12585 -38.19264 -35.96398 -33.93354 -31.89536 -29.80631 -29.72735 -27.24861 -26.73570 -25.22015 -22.50023 -22.01636 -21.65533 -20.46389 -18.34181 -17.11739 -16.91038 -16.77768 -16.37437 -15.39987 -15.02975 -14.89418 -14.63828 -14.16155 -13.97574 -13.84747 -13.54708 -13.17657 -12.99564 -12.87314 -12.76321 -12.54609 -12.46226 -12.22596 -12.17829 -12.04082 -11.97239 -11.66870 -11.49206 -11.40236 -11.37711 -10.93325 -10.47819 -9.26386 -8.89852 -8.07752 -6.19326 1.42823 1.43992 1.56995 2.45573 3.10134 3.20157 3.60310 3.78898 3.86451 4.03461 4.15088 4.23825 4.25307 4.38021 4.57687 4.65281 4.71541 4.72942 4.75707 4.78259 4.86783 4.89808 4.96245 4.99918 5.04802 5.10108 5.13693 5.20340 5.24637 5.33526 5.37766 5.40341 5.51903 5.70690 5.84599 6.04329 6.18779 6.30097 6.69911 6.89493 6.99256 7.51000 8.98221 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027477 B = 0.005145 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.792073 B = 5440.688925 C = 5899.853178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.069 0.931 4 C 0.082 3.918 5 N -0.687 5.687 6 C 0.216 3.784 7 H -0.006 1.006 8 C -0.153 4.153 9 C -0.513 4.513 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.925 5.925 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.279 1.279 17 C 0.062 3.938 18 N -0.539 5.539 19 C 0.035 3.965 20 C -0.124 4.124 21 C -0.125 4.125 22 C 0.033 3.967 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.006 0.994 27 H 0.051 0.949 28 H 0.329 0.671 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 2.031 18.797 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.048 4.048 5 N -0.318 5.318 6 C 0.107 3.893 7 H 0.012 0.988 8 C -0.213 4.213 9 C -0.551 4.551 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.788 3.212 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.205 1.205 17 C -0.067 4.067 18 N -0.264 5.264 19 C -0.093 4.093 20 C -0.162 4.162 21 C -0.163 4.163 22 C -0.095 4.095 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.202 2.067 18.244 18.362 hybrid contribution -0.717 -0.181 -0.524 0.907 sum -0.515 1.886 17.720 17.828 Atomic orbital electron populations 1.21778 0.94025 1.01848 1.02375 1.21120 0.96163 0.99528 0.93051 0.91242 1.21786 0.99459 0.93563 0.89990 1.60701 1.18379 1.50673 1.02017 1.18905 0.92147 0.91159 0.87106 0.98765 1.22213 0.98949 0.99244 1.00894 1.21493 1.43412 0.94749 0.95487 0.92731 1.25759 0.95294 0.97201 1.00896 1.70031 1.46795 1.16727 1.22980 0.85435 0.77551 0.79373 0.78794 1.19224 1.20791 1.20478 1.22254 0.87239 1.00722 0.96471 1.64706 1.11112 1.14235 1.36332 1.23196 0.96342 0.89325 1.00438 1.22488 0.95874 0.99539 0.98282 1.22382 0.97971 0.96936 0.98967 1.22905 0.96958 0.99428 0.90190 0.92846 0.90903 0.92738 0.97559 0.93072 0.85283 0.96002 0.92055 0.94833 0.93051 0.93177 0.91050 0.91839 0.93030 0.89525 0.92029 0.90003 0.90558 0.92967 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.84 71.98 0.64 -2.87 16 2 C -0.08 -2.29 2.42 -10.79 -0.03 -2.32 16 3 H 0.07 2.13 6.63 -2.39 -0.02 2.12 16 4 C 0.08 3.11 4.89 86.30 0.42 3.54 16 5 N -0.69 -30.54 6.23 -495.46 -3.09 -33.63 16 6 C 0.22 11.53 2.57 44.17 0.11 11.64 16 7 H -0.01 -0.34 7.80 -2.39 -0.02 -0.36 16 8 C -0.15 -7.76 8.94 71.98 0.64 -7.11 16 9 C -0.51 -29.60 8.84 25.60 0.23 -29.38 16 10 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 11 C 0.01 0.35 5.30 84.65 0.45 0.80 16 12 N -0.92 -55.08 11.32 21.45 0.24 -54.84 16 13 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 C 0.06 1.52 4.22 86.30 0.36 1.88 16 18 N -0.54 -14.08 4.73 -883.07 -4.18 -18.26 16 19 C 0.03 0.85 5.34 86.65 0.46 1.31 16 20 C -0.12 -2.51 7.06 31.80 0.22 -2.28 16 21 C -0.12 -2.14 6.93 31.47 0.22 -1.92 16 22 C 0.03 0.67 6.70 86.44 0.58 1.25 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 1.44 6.92 -2.38 -0.02 1.43 16 26 H 0.01 0.24 7.44 -2.39 -0.02 0.23 16 27 H 0.05 2.19 7.54 -2.39 -0.02 2.18 16 28 H 0.33 13.64 6.84 -89.70 -0.61 13.02 16 29 H 0.02 0.98 7.45 -2.38 -0.02 0.96 16 30 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 31 H 0.03 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.88 7.54 -2.39 -0.02 1.86 16 36 H 0.05 1.13 8.01 -2.39 -0.02 1.11 16 37 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 0.93 7.67 -2.39 -0.02 0.91 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -62.93 322.46 -0.33 -63.27 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.35 Total: 21.79 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 4.31 Total: -25.46 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -7.02 Total: -106.72 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -62.93 -0.33 -63.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062071815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.070 kcal (2) G-P(sol) polarization free energy of solvation -62.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds