Wall clock time and date at job start Mon Mar 30 2020 03:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46869 * 89.99787 * 8 6 4 10 10 H 1.48500 * 109.47188 * 210.00019 * 8 6 4 11 11 H 1.48502 * 109.46848 * 330.00340 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.47496 * 54.99761 * 14 13 12 16 16 C 1.53009 * 109.47237 * 295.00079 * 14 13 12 17 17 C 1.53004 * 109.47435 * 175.00361 * 14 13 12 18 18 N 1.46897 * 109.47581 * 185.00125 * 17 14 13 19 19 C 1.48537 * 111.00153 * 52.59584 * 18 17 14 20 20 C 1.54930 * 103.22601 * 159.72131 * 19 18 17 21 21 C 1.54596 * 102.92301 * 322.58901 * 20 19 18 22 22 C 1.47899 * 111.00215 * 169.99537 * 18 17 14 23 23 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 24 24 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 25 25 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 27 27 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 30 30 H 1.08995 * 109.47462 * 180.02562 * 16 14 13 31 31 H 1.08999 * 109.46618 * 300.00219 * 16 14 13 32 32 H 1.08995 * 109.46725 * 59.99765 * 16 14 13 33 33 H 1.09001 * 109.46592 * 304.99966 * 17 14 13 34 34 H 1.09003 * 109.47168 * 64.99337 * 17 14 13 35 35 H 1.09002 * 110.66704 * 278.16273 * 19 18 17 36 36 H 1.09005 * 110.66440 * 41.28795 * 19 18 17 37 37 H 1.09001 * 110.72310 * 204.23039 * 20 19 18 38 38 H 1.09008 * 110.72527 * 80.94683 * 20 19 18 39 39 H 1.08996 * 110.30939 * 263.03854 * 21 20 19 40 40 H 1.09008 * 110.30942 * 140.87575 * 21 20 19 41 41 H 1.08995 * 109.91684 * 333.50884 * 22 18 17 42 42 H 1.09003 * 109.91107 * 94.60236 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6296 -0.5460 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5330 -3.5745 15 1 1.9691 -1.4079 -3.7501 16 6 4.0386 -0.9789 -3.3329 17 6 2.5428 0.3852 -4.7972 18 7 2.9208 -0.3743 -5.9965 19 6 2.1097 -1.6125 -6.1201 20 6 2.2457 -1.9771 -7.6197 21 6 2.2317 -0.5959 -8.3140 22 6 2.6545 0.4064 -7.2241 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7088 1.1613 3.4845 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 4.4039 -1.5169 -4.2076 31 1 4.6644 -0.1039 -3.1572 32 1 4.0758 -1.6330 -2.4618 33 1 1.5314 0.7736 -4.9170 34 1 3.2364 1.2146 -4.6587 35 1 2.5188 -2.4045 -5.4928 36 1 1.0682 -1.4172 -5.8645 37 1 1.4005 -2.5823 -7.9477 38 1 3.1871 -2.4936 -7.8073 39 1 1.2294 -0.3633 -8.6736 40 1 2.9436 -0.5800 -9.1393 41 1 1.8503 1.1196 -7.0434 42 1 3.5571 0.9347 -7.5312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062071818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:10 Heat of formation + Delta-G solvation = -11.614481 kcal Electronic energy + Delta-G solvation = -17660.612358 eV Core-core repulsion = 15060.720553 eV Total energy + Delta-G solvation = -2599.891805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.21032 -36.64571 -34.36336 -32.20397 -30.61122 -28.96360 -27.88861 -26.12635 -25.17556 -23.72266 -21.47637 -20.86547 -19.67972 -19.23488 -16.57401 -16.16808 -15.88537 -15.05287 -14.74750 -14.18513 -14.06317 -13.51775 -13.26825 -12.84994 -12.67515 -12.50927 -12.11914 -11.87939 -11.56960 -11.43387 -11.36770 -11.21518 -10.96848 -10.80852 -10.74865 -10.55958 -10.41320 -10.32182 -10.12142 -10.04791 -9.75658 -8.78567 -8.45420 -8.41317 -7.20427 -6.00490 -4.06775 3.30726 3.37211 3.41369 3.96199 4.41897 4.52838 4.59097 4.81795 5.08218 5.18530 5.24127 5.31006 5.38625 5.46358 5.56213 5.63383 5.64336 5.69883 5.79755 5.85822 5.87979 5.96488 6.02472 6.07828 6.28764 6.36524 6.42790 6.64348 6.69364 6.89578 6.93372 7.04731 7.17241 7.27376 7.54839 7.80775 7.93589 8.30685 8.44352 8.72840 9.04753 9.59141 11.05917 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052570 B = 0.004076 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.493447 B = 6867.740673 C = 7023.518429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.688 5.688 13 C 0.066 3.934 14 C -0.089 4.089 15 H 0.077 0.923 16 C -0.138 4.138 17 C 0.053 3.947 18 N -0.514 5.514 19 C 0.033 3.967 20 C -0.125 4.125 21 C -0.131 4.131 22 C 0.034 3.966 23 H 0.080 0.920 24 H 0.002 0.998 25 H 0.031 0.969 26 H 0.260 0.740 27 H 0.330 0.670 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 -2.012 -18.436 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.320 5.320 13 C -0.064 4.064 14 C -0.108 4.108 15 H 0.095 0.905 16 C -0.195 4.195 17 C -0.076 4.076 18 N -0.238 5.238 19 C -0.094 4.094 20 C -0.163 4.163 21 C -0.169 4.169 22 C -0.094 4.094 23 H 0.098 0.902 24 H 0.021 0.979 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.608 -2.241 -18.387 18.706 hybrid contribution 0.118 0.493 1.090 1.202 sum 2.725 -1.748 -17.297 17.598 Atomic orbital electron populations 1.21704 0.97997 0.99240 0.99220 1.19094 0.92560 0.92321 0.85750 0.98288 1.21277 1.31337 1.12461 0.90511 0.92260 1.24927 0.95061 0.95019 0.99043 1.69902 1.36700 1.22965 1.23400 0.86527 0.78457 0.80097 0.82503 1.20765 1.21219 1.19827 1.60745 1.32170 1.33110 1.05994 1.21880 0.99180 0.94035 0.91337 1.21240 0.97769 0.98489 0.93318 0.90508 1.21723 0.95445 1.00998 1.01370 1.22358 0.98755 0.96568 0.89915 1.64789 1.52417 1.05101 1.01538 1.23250 0.96194 0.93640 0.96356 1.22492 1.02113 0.96709 0.94976 1.22388 1.01270 0.95163 0.98064 1.22868 1.00150 0.95899 0.90523 0.90180 0.97854 0.95031 0.92969 0.85146 0.92275 0.96407 0.92287 0.93455 0.92581 0.94800 0.90818 0.89665 0.93632 0.91267 0.90865 0.91741 0.91239 0.93949 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.19 37.15 0.34 -2.81 16 2 C 0.21 5.47 2.60 -68.87 -0.18 5.29 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.46 8.59 -34.44 -0.30 -14.75 16 5 H 0.06 1.63 7.62 -52.48 -0.40 1.23 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.69 -15.03 6.30 -107.96 -0.68 -15.71 16 13 C 0.07 1.22 4.94 -3.82 -0.02 1.21 16 14 C -0.09 -1.33 2.28 -90.62 -0.21 -1.54 16 15 H 0.08 1.19 6.52 -51.93 -0.34 0.85 16 16 C -0.14 -1.98 8.85 37.16 0.33 -1.65 16 17 C 0.05 0.69 4.42 -3.82 -0.02 0.67 16 18 N -0.51 -6.16 4.85 -230.46 -1.12 -7.28 16 19 C 0.03 0.37 5.09 -1.90 -0.01 0.36 16 20 C -0.12 -1.13 7.06 -24.87 -0.18 -1.30 16 21 C -0.13 -1.12 6.93 -25.38 -0.18 -1.29 16 22 C 0.03 0.34 6.69 -2.76 -0.02 0.32 16 23 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 24 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 27 H 0.33 7.06 6.48 -39.29 -0.25 6.81 16 28 H 0.06 1.12 7.44 -51.93 -0.39 0.74 16 29 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 30 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 33 H 0.03 0.45 7.81 -51.93 -0.41 0.05 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.98 7.56 -51.93 -0.39 0.59 16 36 H 0.05 0.53 8.01 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -28.63 321.53 -9.64 -38.28 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.78 Total: 2.47 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.52 Total: -13.87 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -1.17 Total: -48.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.63 -9.64 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062071818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.662 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds