Wall clock time and date at job start Mon Mar 30 2020 03:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46869 * 89.99787 * 8 6 4 10 10 H 1.48500 * 109.47188 * 210.00019 * 8 6 4 11 11 H 1.48502 * 109.46848 * 330.00340 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.47496 * 54.99761 * 14 13 12 16 16 C 1.53009 * 109.47237 * 295.00079 * 14 13 12 17 17 C 1.53004 * 109.47435 * 175.00361 * 14 13 12 18 18 N 1.46897 * 109.47581 * 185.00125 * 17 14 13 19 19 C 1.48537 * 111.00153 * 52.59584 * 18 17 14 20 20 C 1.54930 * 103.22601 * 159.72131 * 19 18 17 21 21 C 1.54596 * 102.92301 * 322.58901 * 20 19 18 22 22 C 1.47899 * 111.00215 * 169.99537 * 18 17 14 23 23 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 24 24 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 25 25 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 27 27 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 30 30 H 1.08995 * 109.47462 * 180.02562 * 16 14 13 31 31 H 1.08999 * 109.46618 * 300.00219 * 16 14 13 32 32 H 1.08995 * 109.46725 * 59.99765 * 16 14 13 33 33 H 1.09001 * 109.46592 * 304.99966 * 17 14 13 34 34 H 1.09003 * 109.47168 * 64.99337 * 17 14 13 35 35 H 1.09002 * 110.66704 * 278.16273 * 19 18 17 36 36 H 1.09005 * 110.66440 * 41.28795 * 19 18 17 37 37 H 1.09001 * 110.72310 * 204.23039 * 20 19 18 38 38 H 1.09008 * 110.72527 * 80.94683 * 20 19 18 39 39 H 1.08996 * 110.30939 * 263.03854 * 21 20 19 40 40 H 1.09008 * 110.30942 * 140.87575 * 21 20 19 41 41 H 1.08995 * 109.91684 * 333.50884 * 22 18 17 42 42 H 1.09003 * 109.91107 * 94.60236 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6296 -0.5460 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5330 -3.5745 15 1 1.9691 -1.4079 -3.7501 16 6 4.0386 -0.9789 -3.3329 17 6 2.5428 0.3852 -4.7972 18 7 2.9208 -0.3743 -5.9965 19 6 2.1097 -1.6125 -6.1201 20 6 2.2457 -1.9771 -7.6197 21 6 2.2317 -0.5959 -8.3140 22 6 2.6545 0.4064 -7.2241 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7088 1.1613 3.4845 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 4.4039 -1.5169 -4.2076 31 1 4.6644 -0.1039 -3.1572 32 1 4.0758 -1.6330 -2.4618 33 1 1.5314 0.7736 -4.9170 34 1 3.2364 1.2146 -4.6587 35 1 2.5188 -2.4045 -5.4928 36 1 1.0682 -1.4172 -5.8645 37 1 1.4005 -2.5823 -7.9477 38 1 3.1871 -2.4936 -7.8073 39 1 1.2294 -0.3633 -8.6736 40 1 2.9436 -0.5800 -9.1393 41 1 1.8503 1.1196 -7.0434 42 1 3.5571 0.9347 -7.5312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062071818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:09 Heat of formation + Delta-G solvation = -29.844226 kcal Electronic energy + Delta-G solvation = -17661.402859 eV Core-core repulsion = 15060.720553 eV Total energy + Delta-G solvation = -2600.682306 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15896 -38.20304 -35.97289 -33.96108 -31.85399 -29.95751 -29.46538 -27.59642 -27.01919 -25.13293 -22.50218 -21.78112 -21.53157 -20.43166 -18.54170 -17.08745 -17.03640 -16.82769 -16.16186 -15.57821 -15.25731 -15.12600 -14.56860 -14.22063 -14.06532 -13.82157 -13.37331 -13.16590 -13.04821 -12.86623 -12.71814 -12.55679 -12.28992 -12.23524 -12.18220 -12.11022 -12.02707 -11.66154 -11.47063 -11.42617 -11.35679 -10.86892 -10.57964 -9.35188 -9.05399 -8.14161 -6.28738 1.41896 1.42946 1.53990 2.41120 3.01441 3.14392 3.58153 3.80159 3.87566 3.98328 4.15115 4.18172 4.23435 4.39505 4.50154 4.63420 4.70070 4.74920 4.78184 4.81683 4.86803 4.94910 5.00659 5.02761 5.05178 5.10067 5.17231 5.20933 5.23776 5.33437 5.37532 5.45461 5.50699 5.66797 5.84857 5.99973 6.08846 6.21074 6.47453 6.77818 7.00288 7.41918 8.91745 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052570 B = 0.004076 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.493447 B = 6867.740673 C = 7023.518429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.033 1.033 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.685 5.685 13 C 0.069 3.931 14 C -0.076 4.076 15 H 0.073 0.927 16 C -0.131 4.131 17 C 0.060 3.940 18 N -0.521 5.521 19 C 0.029 3.971 20 C -0.120 4.120 21 C -0.127 4.127 22 C 0.029 3.971 23 H 0.057 0.943 24 H 0.019 0.981 25 H 0.028 0.972 26 H 0.263 0.737 27 H 0.333 0.667 28 H 0.052 0.948 29 H 0.011 0.989 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -2.880 -19.502 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 H -0.016 1.016 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.317 5.317 13 C -0.061 4.061 14 C -0.095 4.095 15 H 0.092 0.908 16 C -0.188 4.188 17 C -0.069 4.069 18 N -0.246 5.246 19 C -0.099 4.099 20 C -0.158 4.158 21 C -0.165 4.165 22 C -0.098 4.098 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.179 -3.114 -19.480 19.982 hybrid contribution -0.064 0.794 1.372 1.587 sum 3.116 -2.320 -18.107 18.519 Atomic orbital electron populations 1.21530 0.97784 0.98814 0.98897 1.18926 0.92747 0.90723 0.87140 1.01578 1.21594 1.31747 1.12740 0.91632 0.92237 1.25765 0.95113 0.95688 1.02128 1.70030 1.37453 1.24129 1.24205 0.85460 0.77997 0.79074 0.78516 1.20053 1.20790 1.19147 1.60670 1.32376 1.33280 1.05327 1.21917 0.98919 0.93761 0.91527 1.21085 0.97876 0.98180 0.92406 0.90819 1.21654 0.94908 1.00822 1.01449 1.22204 0.98679 0.96158 0.89822 1.64785 1.52646 1.05485 1.01651 1.23289 0.95512 0.93129 0.97974 1.22488 1.02853 0.97223 0.93268 1.22392 1.02139 0.94165 0.97770 1.22958 1.00455 0.96229 0.90194 0.92447 0.96188 0.95301 0.92809 0.84836 0.92900 0.97108 0.91067 0.93561 0.93536 0.95073 0.90830 0.90301 0.94407 0.89975 0.90578 0.90914 0.89900 0.94115 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.19 71.98 0.66 -5.12 16 2 C 0.21 11.27 2.60 44.16 0.11 11.38 16 3 H -0.03 -1.95 7.80 -2.39 -0.02 -1.97 16 4 C -0.54 -30.30 8.59 25.60 0.22 -30.08 16 5 H 0.06 3.27 7.62 -2.91 -0.02 3.24 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 8 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.68 -30.04 6.30 -495.47 -3.12 -33.16 16 13 C 0.07 2.55 4.94 86.30 0.43 2.98 16 14 C -0.08 -2.23 2.28 -10.79 -0.02 -2.25 16 15 H 0.07 2.23 6.52 -2.39 -0.02 2.21 16 16 C -0.13 -3.64 8.85 71.99 0.64 -3.00 16 17 C 0.06 1.53 4.42 86.31 0.38 1.91 16 18 N -0.52 -11.69 4.85 -883.03 -4.28 -15.97 16 19 C 0.03 0.59 5.09 86.65 0.44 1.04 16 20 C -0.12 -1.89 7.06 31.80 0.22 -1.67 16 21 C -0.13 -1.85 6.93 31.47 0.22 -1.63 16 22 C 0.03 0.54 6.69 86.44 0.58 1.12 16 23 H 0.06 3.22 6.07 -2.38 -0.01 3.21 16 24 H 0.02 0.91 7.45 -2.39 -0.02 0.89 16 25 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.33 14.27 6.48 -89.69 -0.58 13.68 16 28 H 0.05 2.01 7.44 -2.39 -0.02 1.99 16 29 H 0.01 0.41 8.05 -2.39 -0.02 0.40 16 30 H 0.07 1.81 7.75 -2.39 -0.02 1.79 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.37 6.68 -2.39 -0.02 1.35 16 33 H 0.03 0.80 7.81 -2.39 -0.02 0.79 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 1.72 7.56 -2.39 -0.02 1.71 16 36 H 0.04 0.84 8.01 -2.38 -0.02 0.82 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.04 0.76 7.57 -2.39 -0.02 0.75 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -60.26 321.53 -0.43 -60.69 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.38 Total: 20.27 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.33 Total: -24.19 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -7.16 Total: -102.72 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.26 -0.43 -60.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062071818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.844 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds