Wall clock time and date at job start Mon Mar 30 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 N 1.46900 * 109.46619 * 294.99903 * 4 2 1 6 6 C 1.46907 * 110.99641 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46793 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46775 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00154 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99823 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00266 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99967 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47142 * 59.99411 * 12 10 8 14 14 H 1.48501 * 109.47254 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47091 * 299.99454 * 12 10 8 16 16 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 17 17 N 1.46905 * 109.47150 * 64.99960 * 16 2 1 18 18 C 1.48528 * 110.99503 * 52.60569 * 17 16 2 19 19 C 1.54941 * 103.22644 * 159.72074 * 18 17 16 20 20 C 1.54592 * 102.91953 * 322.58556 * 19 18 17 21 21 C 1.47903 * 110.99834 * 169.99884 * 17 16 2 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 26 26 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 27 27 H 1.00900 * 111.00289 * 56.04740 * 5 4 2 28 28 H 1.08997 * 109.46942 * 299.99950 * 6 5 4 29 29 H 1.09003 * 109.47142 * 59.99974 * 6 5 4 30 30 H 1.08997 * 109.47631 * 299.99889 * 7 6 5 31 31 H 1.09003 * 109.47002 * 60.00251 * 7 6 5 32 32 H 0.96998 * 120.00104 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.47630 * 185.00216 * 16 2 1 34 34 H 1.09004 * 109.47346 * 305.00346 * 16 2 1 35 35 H 1.09004 * 110.67126 * 278.14894 * 18 17 16 36 36 H 1.08997 * 110.67393 * 41.29067 * 18 17 16 37 37 H 1.09003 * 110.72556 * 204.22825 * 19 18 17 38 38 H 1.08999 * 110.72495 * 80.94097 * 19 18 17 39 39 H 1.09000 * 110.31155 * 263.04143 * 20 19 18 40 40 H 1.09003 * 110.30906 * 140.87474 * 20 19 18 41 41 H 1.08990 * 109.92122 * 333.51558 * 21 17 16 42 42 H 1.09001 * 109.91559 * 94.61168 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6272 3.6672 7 6 1.7024 0.1910 4.8892 8 6 2.1875 -0.4911 6.1424 9 1 2.7419 -1.4154 6.0741 10 6 1.9235 0.0649 7.3762 11 7 1.2488 1.1907 7.4594 12 14 2.5254 -0.7802 8.9296 13 1 4.0062 -0.8865 8.8933 14 1 2.1154 0.0138 10.1157 15 1 1.9335 -2.1395 9.0147 16 6 2.0400 -0.7213 -1.2492 17 7 1.6513 0.0374 -2.4457 18 6 2.0754 1.4567 -2.3369 19 6 2.0776 1.9398 -3.8090 20 6 2.6029 0.7053 -4.5772 21 6 2.3240 -0.4932 -3.6513 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7995 1.2055 27 1 0.6529 0.1793 2.4753 28 1 1.6904 -1.6249 3.7296 29 1 3.2117 -0.7051 3.6405 30 1 2.1372 1.1886 4.8265 31 1 0.6156 0.2693 4.9160 32 1 1.0634 1.5821 8.3273 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 1.3596 2.0279 -1.7457 36 1 3.0746 1.5279 -1.9072 37 1 2.7506 2.7879 -3.9356 38 1 1.0686 2.1950 -4.1328 39 1 3.6731 0.8008 -4.7603 40 1 2.0661 0.5891 -5.5187 41 1 3.2619 -0.9731 -3.3724 42 1 1.6748 -1.2107 -4.1532 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062072411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:36 Heat of formation + Delta-G solvation = -18.696561 kcal Electronic energy + Delta-G solvation = -17147.697050 eV Core-core repulsion = 14547.498142 eV Total energy + Delta-G solvation = -2600.198907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35417 -36.84040 -34.30613 -32.66996 -30.93844 -29.16909 -28.67126 -26.32107 -24.88340 -23.11831 -21.52932 -20.94671 -20.56734 -19.32780 -16.44138 -16.27230 -16.14537 -15.41751 -14.70782 -14.41202 -14.39660 -13.78402 -13.46788 -13.25879 -12.86328 -12.51735 -12.27910 -12.17622 -11.97919 -11.71252 -11.55172 -11.32993 -11.09078 -10.91705 -10.88096 -10.73773 -10.59623 -10.51606 -10.45226 -9.93860 -9.32682 -9.13525 -8.55226 -8.33132 -7.76629 -5.97757 -4.00405 3.34615 3.38783 3.41249 3.81479 4.39089 4.46622 4.49070 4.70701 4.81487 5.01119 5.08885 5.16850 5.25081 5.30207 5.37932 5.42844 5.53484 5.57229 5.61160 5.67041 5.73285 5.79863 5.87713 5.91712 5.96404 6.08109 6.17037 6.37312 6.38320 6.42233 6.52283 6.76125 6.90011 7.01152 7.52641 7.75944 7.86026 8.00613 8.11532 8.46026 9.06728 9.63141 11.13695 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.061773 B = 0.003259 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.164706 B = 8590.628205 C = 8698.666249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.080 0.920 4 C 0.064 3.936 5 N -0.691 5.691 6 C 0.065 3.935 7 C 0.026 3.974 8 C -0.522 4.522 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.053 3.947 17 N -0.514 5.514 18 C 0.033 3.967 19 C -0.125 4.125 20 C -0.131 4.131 21 C 0.034 3.966 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.336 0.664 28 H 0.014 0.986 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.013 0.987 32 H 0.261 0.739 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 -1.499 -22.800 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.067 4.067 5 N -0.323 5.323 6 C -0.063 4.063 7 C -0.012 4.012 8 C -0.561 4.561 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.076 4.076 17 N -0.239 5.239 18 C -0.095 4.095 19 C -0.163 4.163 20 C -0.169 4.169 21 C -0.094 4.094 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.989 -1.009 -22.735 22.779 hybrid contribution 0.652 -1.246 1.104 1.788 sum 1.640 -2.256 -21.631 21.810 Atomic orbital electron populations 1.21748 0.94673 1.01478 1.01883 1.21235 0.96733 1.00383 0.92593 0.90164 1.21913 0.99977 0.94506 0.90263 1.60618 1.19509 1.50283 1.01895 1.22153 0.99109 0.95451 0.89561 1.19061 0.96519 0.95718 0.89884 1.21154 1.35382 1.08401 0.91195 0.92833 1.25006 0.95245 0.94987 0.99129 1.69964 1.40002 1.18682 1.24635 0.86645 0.79219 0.79464 0.82574 1.20234 1.21254 1.20294 1.22342 0.97800 0.97798 0.89662 1.64790 1.54468 1.02269 1.02336 1.23262 0.99551 0.89890 0.96798 1.22493 1.01709 0.97225 0.94875 1.22392 1.00930 0.94768 0.98837 1.22870 0.97352 0.97350 0.91831 0.91898 0.93354 0.92577 0.95936 0.91800 0.84542 0.96755 0.92492 0.95676 0.96842 0.92934 0.94718 0.90763 0.89612 0.93598 0.91174 0.90801 0.91688 0.91165 0.93928 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.85 37.16 0.33 -1.39 16 2 C -0.09 -1.13 2.28 -90.62 -0.21 -1.34 16 3 H 0.08 1.08 6.52 -51.93 -0.34 0.74 16 4 C 0.06 0.95 5.14 -3.82 -0.02 0.93 16 5 N -0.69 -12.74 6.50 -113.77 -0.74 -13.48 16 6 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 7 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 8 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 12 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.05 0.58 4.42 -3.82 -0.02 0.57 16 17 N -0.51 -5.39 4.85 -230.45 -1.12 -6.51 16 18 C 0.03 0.32 5.08 -1.90 -0.01 0.31 16 19 C -0.12 -1.01 7.06 -24.87 -0.18 -1.18 16 20 C -0.13 -0.99 6.93 -25.38 -0.18 -1.17 16 21 C 0.03 0.30 6.70 -2.75 -0.02 0.28 16 22 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.73 6.68 -51.93 -0.35 0.38 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.34 6.02 6.98 -39.29 -0.27 5.75 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.03 0.39 7.81 -51.93 -0.41 -0.02 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.88 7.56 -51.93 -0.39 0.49 16 36 H 0.05 0.47 8.01 -51.93 -0.42 0.06 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.04 0.37 7.57 -51.93 -0.39 -0.02 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -30.15 328.16 -10.08 -40.22 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.01 Total: -0.62 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.87 Total: -14.90 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -1.12 Total: -46.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.15 -10.08 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062072411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.524 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds