Wall clock time and date at job start Mon Mar 30 2020 03:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47335 * 2 1 4 4 C 1.52994 * 109.47317 * 239.99662 * 2 1 3 5 5 N 1.46901 * 109.47284 * 65.00137 * 4 2 1 6 6 C 1.46900 * 111.00504 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47364 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47163 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99948 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99990 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00009 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99882 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47529 * 89.99718 * 12 10 8 14 14 H 1.48497 * 109.47113 * 209.99876 * 12 10 8 15 15 H 1.48500 * 109.47137 * 329.99658 * 12 10 8 16 16 C 1.52998 * 109.47092 * 119.99744 * 2 1 3 17 17 N 1.46897 * 109.47292 * 184.08459 * 16 2 1 18 18 C 1.48537 * 111.00332 * 58.27955 * 17 16 2 19 19 C 1.54937 * 103.22813 * 159.72337 * 18 17 16 20 20 C 1.54598 * 102.92414 * 322.58811 * 19 18 17 21 21 C 1.47904 * 111.00151 * 175.67820 * 17 16 2 22 22 H 1.08995 * 109.47278 * 184.44657 * 1 2 3 23 23 H 1.09006 * 109.47382 * 304.44953 * 1 2 3 24 24 H 1.08999 * 109.47337 * 64.44349 * 1 2 3 25 25 H 1.09007 * 109.47088 * 305.00191 * 4 2 1 26 26 H 1.09003 * 109.47494 * 184.99900 * 4 2 1 27 27 H 1.00911 * 110.99680 * 303.95513 * 5 4 2 28 28 H 1.09002 * 109.46845 * 299.99979 * 6 5 4 29 29 H 1.09000 * 109.46948 * 59.99346 * 6 5 4 30 30 H 1.09002 * 109.47177 * 299.99842 * 7 6 5 31 31 H 1.08996 * 109.47137 * 59.99950 * 7 6 5 32 32 H 0.97002 * 120.00300 * 180.02562 * 11 10 8 33 33 H 1.09008 * 109.47405 * 304.08248 * 16 2 1 34 34 H 1.08999 * 109.47463 * 64.07862 * 16 2 1 35 35 H 1.08995 * 110.66630 * 278.16145 * 18 17 16 36 36 H 1.09000 * 110.66547 * 41.29056 * 18 17 16 37 37 H 1.09005 * 110.72205 * 204.22774 * 19 18 17 38 38 H 1.09002 * 110.72540 * 80.94617 * 19 18 17 39 39 H 1.08999 * 110.30676 * 263.04757 * 20 19 18 40 40 H 1.08997 * 110.31122 * 140.87456 * 20 19 18 41 41 H 1.08998 * 109.91470 * 333.50658 * 21 17 16 42 42 H 1.09001 * 109.91385 * 94.60759 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6514 0.0373 -2.4456 6 6 2.1248 -0.6273 -3.6672 7 6 1.7015 0.1901 -4.8892 8 6 2.1876 -0.4914 -6.1424 9 1 2.7434 -1.4149 -6.0739 10 6 1.9238 0.0647 -7.3762 11 7 1.2475 1.1895 -7.4595 12 14 2.5259 -0.7804 -8.9294 13 1 1.4889 -1.7278 -9.4113 14 1 2.7902 0.2387 -9.9767 15 1 3.7772 -1.5239 -8.6352 16 6 2.0399 -0.7212 1.2493 17 7 3.5056 -0.6364 1.2996 18 6 3.9570 0.7787 1.3078 19 6 5.3936 0.6893 1.8811 20 6 5.2697 -0.4172 2.9536 21 6 4.0285 -1.2336 2.5476 22 1 -0.3633 -1.0245 0.0797 23 1 -0.3634 0.5814 0.8475 24 1 -0.3634 0.4433 -0.9271 25 1 1.6053 -1.7199 -1.2950 26 1 3.1263 -0.7995 -1.2055 27 1 0.6528 0.1792 -2.4753 28 1 3.2117 -0.7052 -3.6405 29 1 1.6905 -1.6250 -3.7296 30 1 0.6145 0.2676 -4.9157 31 1 2.1355 1.1880 -4.8270 32 1 1.0616 1.5805 -8.3275 33 1 1.6181 -0.2513 2.1378 34 1 1.7376 -1.7678 1.2136 35 1 3.9711 1.1838 0.2960 36 1 3.3210 1.3816 1.9559 37 1 5.6872 1.6357 2.3354 38 1 6.1011 0.3968 1.1052 39 1 5.1253 0.0256 3.9391 40 1 6.1571 -1.0501 2.9486 41 1 3.2734 -1.1761 3.3315 42 1 4.3051 -2.2736 2.3740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062072413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:38 Heat of formation + Delta-G solvation = -18.331613 kcal Electronic energy + Delta-G solvation = -17336.385656 eV Core-core repulsion = 14736.202574 eV Total energy + Delta-G solvation = -2600.183082 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.28329 -36.75664 -34.26554 -32.59826 -30.98857 -29.01022 -28.90407 -25.91990 -24.96174 -23.05864 -21.50052 -20.94251 -20.50138 -19.32544 -16.36312 -16.16032 -16.08611 -15.64008 -14.41669 -14.35122 -14.33026 -13.72027 -13.38001 -13.22236 -12.89708 -12.45584 -12.32919 -12.14732 -11.98347 -11.69676 -11.51029 -11.26228 -11.06951 -10.90601 -10.84701 -10.71589 -10.58890 -10.45772 -10.40427 -9.88392 -9.27367 -9.08360 -8.47614 -8.30215 -7.67079 -5.94930 -3.97061 3.35424 3.41337 3.45311 3.88471 4.45907 4.49619 4.55375 4.75974 4.80025 5.04934 5.13336 5.19243 5.27491 5.35279 5.40949 5.42919 5.55585 5.60887 5.65028 5.68619 5.72815 5.86191 5.94613 5.97154 6.02823 6.05671 6.21005 6.38237 6.43298 6.49949 6.59677 6.81541 6.97493 7.07742 7.60082 7.81103 7.91561 8.08115 8.16732 8.50447 9.10428 9.66384 11.16602 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033480 B = 0.003893 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.118123 B = 7190.077253 C = 7617.390190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.079 0.921 4 C 0.070 3.930 5 N -0.694 5.694 6 C 0.067 3.933 7 C 0.025 3.975 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.054 3.946 17 N -0.514 5.514 18 C 0.033 3.967 19 C -0.125 4.125 20 C -0.131 4.131 21 C 0.035 3.965 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.079 0.921 27 H 0.331 0.669 28 H 0.057 0.943 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -2.468 21.661 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.059 4.059 5 N -0.325 5.325 6 C -0.061 4.061 7 C -0.012 4.012 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.074 4.074 17 N -0.238 5.238 18 C -0.094 4.094 19 C -0.163 4.163 20 C -0.169 4.169 21 C -0.093 4.093 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.149 0.851 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.986 -2.209 21.107 21.593 hybrid contribution -0.742 -0.815 -0.225 1.125 sum 3.244 -3.024 20.882 21.348 Atomic orbital electron populations 1.21837 0.95343 1.01466 1.02078 1.21210 0.95179 1.00477 0.93963 0.90239 1.21883 1.01257 0.93646 0.89157 1.60654 1.19035 1.50630 1.02212 1.22117 0.99180 0.95294 0.89522 1.19068 0.96411 0.95762 0.89999 1.21205 1.35089 1.08400 0.91197 0.92772 1.25004 0.95307 0.94976 0.99122 1.69976 1.40164 1.18784 1.24445 0.86590 0.79162 0.79197 0.83024 1.20744 1.21216 1.19867 1.22343 0.87230 1.00910 0.96949 1.64768 1.10122 1.14305 1.34617 1.23272 0.94885 0.89593 1.01680 1.22492 0.97279 0.98290 0.98238 1.22391 0.98202 0.97629 0.98675 1.22857 0.96049 0.99602 0.90826 0.93006 0.93067 0.91656 0.96495 0.90223 0.85053 0.92421 0.96927 0.96949 0.95697 0.93052 0.94924 0.90870 0.89178 0.94009 0.91240 0.90576 0.91821 0.91118 0.94149 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.06 37.16 0.34 -1.38 16 2 C -0.09 -1.12 2.40 -90.63 -0.22 -1.34 16 3 H 0.08 1.07 6.68 -51.93 -0.35 0.72 16 4 C 0.07 1.10 5.08 -3.83 -0.02 1.08 16 5 N -0.69 -13.01 6.50 -113.78 -0.74 -13.75 16 6 C 0.07 1.49 5.62 -3.83 -0.02 1.47 16 7 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 8 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 9 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 12 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.05 0.60 4.24 -3.83 -0.02 0.59 16 17 N -0.51 -5.87 4.68 -230.45 -1.08 -6.95 16 18 C 0.03 0.36 5.34 -1.90 -0.01 0.35 16 19 C -0.12 -1.15 7.06 -24.87 -0.18 -1.32 16 20 C -0.13 -1.08 6.93 -25.37 -0.18 -1.26 16 21 C 0.03 0.33 6.70 -2.75 -0.02 0.31 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.81 6.49 -51.93 -0.34 0.48 16 25 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 1.33 7.59 -51.93 -0.39 0.94 16 27 H 0.33 5.99 6.90 -39.29 -0.27 5.72 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.03 0.34 7.97 -51.92 -0.41 -0.08 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.10 7.56 -51.93 -0.39 0.71 16 36 H 0.04 0.43 8.02 -51.93 -0.42 0.01 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.36 7.66 -51.93 -0.40 -0.04 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -30.49 328.33 -10.04 -40.52 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.01 Total: -0.21 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.87 Total: -14.90 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -1.08 Total: -47.43 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.49 -10.04 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062072413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.193 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds