Wall clock time and date at job start Mon Mar 30 2020 03:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47335 * 2 1 4 4 C 1.52994 * 109.47317 * 239.99662 * 2 1 3 5 5 N 1.46901 * 109.47284 * 65.00137 * 4 2 1 6 6 C 1.46900 * 111.00504 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47364 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47163 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99948 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99990 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00009 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99882 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47529 * 89.99718 * 12 10 8 14 14 H 1.48497 * 109.47113 * 209.99876 * 12 10 8 15 15 H 1.48500 * 109.47137 * 329.99658 * 12 10 8 16 16 C 1.52998 * 109.47092 * 119.99744 * 2 1 3 17 17 N 1.46897 * 109.47292 * 184.08459 * 16 2 1 18 18 C 1.48537 * 111.00332 * 58.27955 * 17 16 2 19 19 C 1.54937 * 103.22813 * 159.72337 * 18 17 16 20 20 C 1.54598 * 102.92414 * 322.58811 * 19 18 17 21 21 C 1.47904 * 111.00151 * 175.67820 * 17 16 2 22 22 H 1.08995 * 109.47278 * 184.44657 * 1 2 3 23 23 H 1.09006 * 109.47382 * 304.44953 * 1 2 3 24 24 H 1.08999 * 109.47337 * 64.44349 * 1 2 3 25 25 H 1.09007 * 109.47088 * 305.00191 * 4 2 1 26 26 H 1.09003 * 109.47494 * 184.99900 * 4 2 1 27 27 H 1.00911 * 110.99680 * 303.95513 * 5 4 2 28 28 H 1.09002 * 109.46845 * 299.99979 * 6 5 4 29 29 H 1.09000 * 109.46948 * 59.99346 * 6 5 4 30 30 H 1.09002 * 109.47177 * 299.99842 * 7 6 5 31 31 H 1.08996 * 109.47137 * 59.99950 * 7 6 5 32 32 H 0.97002 * 120.00300 * 180.02562 * 11 10 8 33 33 H 1.09008 * 109.47405 * 304.08248 * 16 2 1 34 34 H 1.08999 * 109.47463 * 64.07862 * 16 2 1 35 35 H 1.08995 * 110.66630 * 278.16145 * 18 17 16 36 36 H 1.09000 * 110.66547 * 41.29056 * 18 17 16 37 37 H 1.09005 * 110.72205 * 204.22774 * 19 18 17 38 38 H 1.09002 * 110.72540 * 80.94617 * 19 18 17 39 39 H 1.08999 * 110.30676 * 263.04757 * 20 19 18 40 40 H 1.08997 * 110.31122 * 140.87456 * 20 19 18 41 41 H 1.08998 * 109.91470 * 333.50658 * 21 17 16 42 42 H 1.09001 * 109.91385 * 94.60759 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6514 0.0373 -2.4456 6 6 2.1248 -0.6273 -3.6672 7 6 1.7015 0.1901 -4.8892 8 6 2.1876 -0.4914 -6.1424 9 1 2.7434 -1.4149 -6.0739 10 6 1.9238 0.0647 -7.3762 11 7 1.2475 1.1895 -7.4595 12 14 2.5259 -0.7804 -8.9294 13 1 1.4889 -1.7278 -9.4113 14 1 2.7902 0.2387 -9.9767 15 1 3.7772 -1.5239 -8.6352 16 6 2.0399 -0.7212 1.2493 17 7 3.5056 -0.6364 1.2996 18 6 3.9570 0.7787 1.3078 19 6 5.3936 0.6893 1.8811 20 6 5.2697 -0.4172 2.9536 21 6 4.0285 -1.2336 2.5476 22 1 -0.3633 -1.0245 0.0797 23 1 -0.3634 0.5814 0.8475 24 1 -0.3634 0.4433 -0.9271 25 1 1.6053 -1.7199 -1.2950 26 1 3.1263 -0.7995 -1.2055 27 1 0.6528 0.1792 -2.4753 28 1 3.2117 -0.7052 -3.6405 29 1 1.6905 -1.6250 -3.7296 30 1 0.6145 0.2676 -4.9157 31 1 2.1355 1.1880 -4.8270 32 1 1.0616 1.5805 -8.3275 33 1 1.6181 -0.2513 2.1378 34 1 1.7376 -1.7678 1.2136 35 1 3.9711 1.1838 0.2960 36 1 3.3210 1.3816 1.9559 37 1 5.6872 1.6357 2.3354 38 1 6.1011 0.3968 1.1052 39 1 5.1253 0.0256 3.9391 40 1 6.1571 -1.0501 2.9486 41 1 3.2734 -1.1761 3.3315 42 1 4.3051 -2.2736 2.3740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062072413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:38 Heat of formation + Delta-G solvation = -38.318502 kcal Electronic energy + Delta-G solvation = -17337.252352 eV Core-core repulsion = 14736.202574 eV Total energy + Delta-G solvation = -2601.049779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14298 -38.06319 -35.87198 -34.45957 -32.08895 -30.67429 -29.75178 -27.17572 -26.40181 -24.65398 -22.44316 -22.40278 -21.65878 -20.38001 -18.50989 -17.24082 -16.92790 -16.90997 -16.44361 -15.63437 -15.43821 -14.89678 -14.58065 -14.40158 -14.16755 -13.85408 -13.76775 -13.44847 -13.01941 -12.97784 -12.82944 -12.57750 -12.44768 -12.24441 -12.05517 -11.97609 -11.83772 -11.69921 -11.44330 -11.40933 -11.35788 -11.11326 -10.56396 -9.30777 -9.24050 -8.20242 -6.31994 1.40327 1.42331 1.53694 2.40985 3.07586 3.12863 3.37257 3.75991 3.82574 3.98429 4.09904 4.14866 4.21057 4.37594 4.51285 4.56010 4.61774 4.64002 4.70279 4.74288 4.78459 4.85285 4.95184 4.98500 4.99985 5.06493 5.10061 5.14793 5.23210 5.31237 5.34669 5.40639 5.45883 5.67515 5.79113 6.01026 6.14524 6.16614 6.31149 6.59564 6.84937 7.37202 8.92036 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033480 B = 0.003893 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.118123 B = 7190.077253 C = 7617.390190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 H 0.069 0.931 4 C 0.076 3.924 5 N -0.698 5.698 6 C 0.085 3.915 7 C 0.033 3.967 8 C -0.547 4.547 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.969 3.031 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.264 1.264 16 C 0.061 3.939 17 N -0.535 5.535 18 C 0.033 3.967 19 C -0.124 4.124 20 C -0.126 4.126 21 C 0.033 3.967 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.019 0.981 26 H 0.067 0.933 27 H 0.336 0.664 28 H 0.053 0.947 29 H 0.015 0.985 30 H -0.009 1.009 31 H -0.006 1.006 32 H 0.264 0.736 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -3.453 22.655 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.088 0.912 4 C -0.053 4.053 5 N -0.330 5.330 6 C -0.044 4.044 7 C -0.005 4.005 8 C -0.585 4.585 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.793 3.207 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.188 1.188 16 C -0.068 4.068 17 N -0.259 5.259 18 C -0.095 4.095 19 C -0.162 4.162 20 C -0.164 4.164 21 C -0.095 4.095 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.010 0.990 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.360 -3.202 22.127 22.779 hybrid contribution -0.872 -0.473 -0.500 1.111 sum 3.488 -3.675 21.627 22.213 Atomic orbital electron populations 1.21811 0.94255 1.02207 1.02165 1.21117 0.96007 0.99671 0.93204 0.91212 1.21873 1.00573 0.93791 0.89028 1.60568 1.19429 1.50949 1.02030 1.21741 0.98795 0.94585 0.89268 1.18915 0.94708 0.94836 0.92011 1.21619 1.35574 1.08903 0.92409 0.92281 1.25990 0.95181 0.95588 1.02973 1.70109 1.41098 1.20289 1.25652 0.85397 0.79016 0.78184 0.78139 1.19622 1.20557 1.18788 1.22261 0.87300 1.00880 0.96351 1.64734 1.10327 1.14707 1.36151 1.23219 0.96144 0.89463 1.00633 1.22490 0.95933 0.99466 0.98330 1.22388 0.97944 0.97174 0.98906 1.22909 0.96748 0.99599 0.90223 0.92223 0.91213 0.93045 0.96263 0.91449 0.84526 0.92846 0.96682 0.99027 0.98761 0.92688 0.93467 0.90582 0.91438 0.93340 0.89833 0.91669 0.90341 0.90469 0.93171 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.06 71.98 0.65 -2.50 16 2 C -0.08 -1.96 2.40 -10.80 -0.03 -1.99 16 3 H 0.07 1.85 6.68 -2.38 -0.02 1.83 16 4 C 0.08 2.36 5.08 86.30 0.44 2.80 16 5 N -0.70 -26.50 6.50 -513.89 -3.34 -29.84 16 6 C 0.09 3.85 5.62 86.30 0.49 4.33 16 7 C 0.03 1.83 5.23 29.85 0.16 1.98 16 8 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 9 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 10 C 0.00 0.04 5.46 84.66 0.46 0.50 16 11 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 12 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 C 0.06 1.24 4.24 86.30 0.37 1.61 16 17 N -0.53 -11.59 4.68 -883.00 -4.14 -15.72 16 18 C 0.03 0.69 5.34 86.65 0.46 1.15 16 19 C -0.12 -2.13 7.06 31.80 0.22 -1.90 16 20 C -0.13 -1.82 6.93 31.48 0.22 -1.60 16 21 C 0.03 0.56 6.70 86.45 0.58 1.14 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.05 1.25 6.49 -2.39 -0.02 1.23 16 25 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.07 2.26 7.59 -2.39 -0.02 2.25 16 27 H 0.34 12.31 6.90 -89.68 -0.62 11.69 16 28 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.05 0.85 7.97 -2.38 -0.02 0.83 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.69 7.56 -2.39 -0.02 1.67 16 36 H 0.05 0.93 8.02 -2.39 -0.02 0.91 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 0.76 7.66 -2.39 -0.02 0.74 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -65.32 328.33 -0.58 -65.90 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.33 Total: 16.76 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.25 Total: -26.58 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -7.19 Total: -103.29 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.32 -0.58 -65.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062072413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.586 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds