Wall clock time and date at job start Mon Mar 30 2020 04:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46909 * 109.47171 * 2 1 4 4 C 1.46896 * 110.99698 * 72.74134 * 3 2 1 5 5 C 1.52994 * 109.47490 * 68.08421 * 4 3 2 6 6 C 1.46900 * 110.99784 * 196.69444 * 3 2 1 7 7 H 1.08999 * 110.28463 * 81.25679 * 6 3 2 8 8 C 1.54258 * 110.32542 * 319.12331 * 6 3 2 9 9 C 1.54375 * 105.05931 * 241.00486 * 8 6 3 10 10 N 1.48560 * 104.70143 * 336.08699 * 9 8 6 11 11 C 1.46899 * 111.00214 * 159.09954 * 10 9 8 12 12 H 1.09006 * 109.46997 * 304.72042 * 11 10 9 13 13 C 1.53001 * 109.47149 * 64.71699 * 11 10 9 14 14 C 1.50700 * 109.47327 * 184.71569 * 11 10 9 15 15 H 1.08002 * 119.99928 * 0.02562 * 14 11 10 16 16 C 1.37872 * 120.00098 * 179.97438 * 14 11 10 17 17 N 1.31521 * 120.00178 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00253 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.46927 * 60.00312 * 18 16 14 20 20 H 1.48499 * 109.47303 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47072 * 300.00566 * 18 16 14 22 22 C 1.48855 * 104.07622 * 39.47218 * 10 9 8 23 23 H 1.09002 * 109.46698 * 294.68287 * 1 2 3 24 24 H 1.08999 * 109.47361 * 54.68238 * 1 2 3 25 25 H 1.08994 * 109.47068 * 174.68165 * 1 2 3 26 26 H 1.08999 * 109.47020 * 240.00358 * 2 1 3 27 27 H 1.08994 * 109.47356 * 120.00233 * 2 1 3 28 28 H 1.09004 * 109.46617 * 188.08605 * 4 3 2 29 29 H 1.09002 * 109.47554 * 308.07836 * 4 3 2 30 30 H 1.09004 * 109.46884 * 83.21849 * 5 4 3 31 31 H 1.08997 * 109.47176 * 203.21679 * 5 4 3 32 32 H 1.08997 * 109.46868 * 323.22361 * 5 4 3 33 33 H 1.09002 * 110.32097 * 122.10914 * 8 6 3 34 34 H 1.08996 * 110.32513 * 359.90146 * 8 6 3 35 35 H 1.09004 * 110.41533 * 94.92801 * 9 8 6 36 36 H 1.09000 * 110.41086 * 217.25132 * 9 8 6 37 37 H 1.09002 * 109.47123 * 65.23407 * 13 11 10 38 38 H 1.08994 * 109.47564 * 185.23914 * 13 11 10 39 39 H 1.09000 * 109.47194 * 305.24169 * 13 11 10 40 40 H 0.96995 * 120.00125 * 179.97438 * 17 16 14 41 41 H 1.09002 * 110.39502 * 201.75701 * 22 10 9 42 42 H 1.08996 * 110.49727 * 79.38454 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8116 2.0169 1.3097 5 6 2.7226 1.3556 2.3457 6 6 3.4337 1.4435 -0.3940 7 1 3.5257 1.4007 -1.4792 8 6 4.2194 0.2863 0.2565 9 6 5.2855 0.9711 1.1383 10 7 5.4684 2.3155 0.5331 11 6 6.0537 3.2532 1.5006 12 1 5.4363 3.2814 2.3985 13 6 7.4659 2.7924 1.8671 14 6 6.1169 4.6299 0.8908 15 1 5.7577 4.7921 -0.1147 16 6 6.6322 5.6824 1.6170 17 7 7.0692 5.4850 2.8417 18 14 6.7099 7.3891 0.8615 19 1 5.3391 7.8358 0.5058 20 1 7.3006 8.3372 1.8400 21 1 7.5512 7.3511 -0.3617 22 6 4.0912 2.7302 0.1495 23 1 -0.3633 0.4292 0.9338 24 1 -0.3634 0.5941 -0.8385 25 1 -0.3633 -1.0232 -0.0952 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0486 3.0788 1.2425 29 1 0.7710 1.8954 1.6106 30 1 3.7152 1.8032 2.2950 31 1 2.3074 1.5044 3.3424 32 1 2.7944 0.2881 2.1376 33 1 4.6971 -0.3246 -0.5095 34 1 3.5563 -0.3241 0.8695 35 1 4.9293 1.0614 2.1645 36 1 6.2200 0.4108 1.1091 37 1 8.1075 2.8529 0.9880 38 1 7.8649 3.4338 2.6529 39 1 7.4315 1.7622 2.2214 40 1 7.4321 6.2255 3.3525 41 1 4.1271 3.4955 -0.6258 42 1 3.5468 3.0970 1.0197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062979904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:34 Heat of formation + Delta-G solvation = 43.658595 kcal Electronic energy + Delta-G solvation = -18987.308035 eV Core-core repulsion = 16389.813050 eV Total energy + Delta-G solvation = -2597.494985 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20845 -36.36218 -33.37473 -31.41290 -30.91549 -29.45017 -28.30979 -26.04735 -24.99448 -23.61930 -21.51976 -21.23224 -19.60440 -18.60577 -16.69332 -15.88410 -15.84281 -15.28035 -14.54036 -14.08062 -13.51802 -13.42839 -13.11899 -12.90730 -12.69263 -12.28759 -11.90123 -11.72694 -11.49404 -11.31596 -11.15879 -11.07686 -10.90628 -10.70623 -10.64415 -10.55876 -10.24046 -10.10802 -10.02780 -9.87894 -9.67872 -8.85148 -8.42536 -8.03793 -7.20695 -6.00215 -4.04309 3.33685 3.37657 3.41143 4.09582 4.42803 4.93248 5.07100 5.14624 5.20622 5.31558 5.34571 5.39475 5.45207 5.53467 5.61357 5.68898 5.75686 5.87115 5.94949 6.04408 6.08613 6.16821 6.26000 6.28262 6.38896 6.51290 6.57999 6.68771 6.73982 6.86029 7.05240 7.07830 7.31998 7.33995 7.49604 7.63956 7.84529 8.13254 8.31573 8.56493 9.01847 9.60887 11.07005 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033071 B = 0.006774 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.469164 B = 4132.589392 C = 4462.490300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.528 5.528 4 C 0.043 3.957 5 C -0.219 4.219 6 C 0.077 3.923 7 H 0.086 0.914 8 C -0.160 4.160 9 C 0.021 3.979 10 N -0.503 5.503 11 C 0.204 3.796 12 H -0.001 1.001 13 C -0.128 4.128 14 C -0.503 4.503 15 H 0.061 0.939 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.037 3.963 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.006 0.994 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 -10.026 -2.652 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.252 5.252 4 C -0.085 4.085 5 C -0.276 4.276 6 C -0.031 4.031 7 H 0.104 0.896 8 C -0.199 4.199 9 C -0.107 4.107 10 N -0.229 5.229 11 C 0.098 3.902 12 H 0.016 0.984 13 C -0.186 4.186 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.091 4.091 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.410 -9.644 -3.307 13.874 hybrid contribution 0.149 0.513 1.027 1.158 sum -9.262 -9.131 -2.280 13.204 Atomic orbital electron populations 1.21780 0.95371 1.00997 1.02220 1.22138 0.95479 0.90022 1.00667 1.62502 1.18036 1.16643 1.27979 1.22264 0.98770 1.00118 0.87354 1.23248 1.03201 1.01672 0.99501 1.22597 0.85340 0.95458 0.99747 0.89636 1.23228 0.98389 0.98607 0.99701 1.23313 0.97587 0.93288 0.96534 1.65565 1.17154 1.01311 1.38821 1.19404 0.91867 0.90170 0.88790 0.98392 1.21764 0.98930 0.96654 1.01297 1.21073 1.40711 0.91847 1.00533 0.92082 1.24925 0.95349 0.99024 0.94859 1.69895 1.42082 1.31686 1.09691 0.86590 0.78326 0.83774 0.78903 1.20321 1.21399 1.20220 1.23416 0.89950 0.95105 1.00655 0.92973 0.91955 0.92811 0.91179 0.94147 0.89517 0.91431 0.89430 0.93098 0.92073 0.91773 0.90942 0.93469 0.91568 0.94609 0.90051 0.97521 0.92981 0.90515 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.88 37.16 0.37 -1.12 16 2 C 0.04 0.53 4.50 -3.82 -0.02 0.51 16 3 N -0.53 -7.54 4.89 -224.99 -1.10 -8.64 16 4 C 0.04 0.62 5.39 -3.83 -0.02 0.60 16 5 C -0.22 -3.25 7.57 37.15 0.28 -2.97 16 6 C 0.08 1.23 3.50 -66.33 -0.23 1.00 16 7 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 8 C -0.16 -2.42 5.22 -25.35 -0.13 -2.55 16 9 C 0.02 0.38 4.79 -2.18 -0.01 0.37 16 10 N -0.50 -10.86 5.19 -223.14 -1.16 -12.01 16 11 C 0.20 5.15 1.77 -68.86 -0.12 5.03 16 12 H 0.00 -0.04 7.51 -51.93 -0.39 -0.43 16 13 C -0.13 -3.18 8.95 37.16 0.33 -2.85 16 14 C -0.50 -13.82 8.10 -34.44 -0.28 -14.10 16 15 H 0.06 1.69 6.97 -52.49 -0.37 1.32 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -25.54 11.38 55.43 0.63 -24.91 16 18 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.04 0.72 4.48 -2.01 -0.01 0.71 16 23 H 0.05 0.53 6.86 -51.93 -0.36 0.17 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 27 H 0.04 0.48 4.94 -51.93 -0.26 0.23 16 28 H 0.09 1.40 6.09 -51.93 -0.32 1.08 16 29 H 0.07 0.87 6.59 -51.93 -0.34 0.53 16 30 H 0.09 1.56 2.61 -51.93 -0.14 1.43 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.85 4.15 -51.93 -0.22 0.63 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.00 3.69 -51.93 -0.19 0.80 16 35 H 0.05 0.88 4.96 -51.93 -0.26 0.62 16 36 H 0.07 1.20 7.57 -51.93 -0.39 0.81 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 2.19 6.23 -51.93 -0.32 1.86 16 39 H 0.01 0.13 6.83 -51.93 -0.35 -0.22 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.08 1.60 7.43 -51.93 -0.39 1.22 16 42 H 0.06 1.25 3.63 -51.93 -0.19 1.06 16 LS Contribution 292.90 15.07 4.41 4.41 Total: -1.00 -27.85 292.90 -8.73 -36.58 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.55 Total: 1.91 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 0.06 Total: -13.81 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -1.63 Total: -45.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.85 -8.73 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062979904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.239 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds