Wall clock time and date at job start Mon Mar 30 2020 04:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46909 * 109.47171 * 2 1 4 4 C 1.46896 * 110.99698 * 72.74134 * 3 2 1 5 5 C 1.52994 * 109.47490 * 68.08421 * 4 3 2 6 6 C 1.46900 * 110.99784 * 196.69444 * 3 2 1 7 7 H 1.08999 * 110.28463 * 81.25679 * 6 3 2 8 8 C 1.54258 * 110.32542 * 319.12331 * 6 3 2 9 9 C 1.54375 * 105.05931 * 241.00486 * 8 6 3 10 10 N 1.48560 * 104.70143 * 336.08699 * 9 8 6 11 11 C 1.46899 * 111.00214 * 159.09954 * 10 9 8 12 12 H 1.09006 * 109.46997 * 304.72042 * 11 10 9 13 13 C 1.53001 * 109.47149 * 64.71699 * 11 10 9 14 14 C 1.50700 * 109.47327 * 184.71569 * 11 10 9 15 15 H 1.08002 * 119.99928 * 0.02562 * 14 11 10 16 16 C 1.37872 * 120.00098 * 179.97438 * 14 11 10 17 17 N 1.31521 * 120.00178 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00253 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.46927 * 60.00312 * 18 16 14 20 20 H 1.48499 * 109.47303 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47072 * 300.00566 * 18 16 14 22 22 C 1.48855 * 104.07622 * 39.47218 * 10 9 8 23 23 H 1.09002 * 109.46698 * 294.68287 * 1 2 3 24 24 H 1.08999 * 109.47361 * 54.68238 * 1 2 3 25 25 H 1.08994 * 109.47068 * 174.68165 * 1 2 3 26 26 H 1.08999 * 109.47020 * 240.00358 * 2 1 3 27 27 H 1.08994 * 109.47356 * 120.00233 * 2 1 3 28 28 H 1.09004 * 109.46617 * 188.08605 * 4 3 2 29 29 H 1.09002 * 109.47554 * 308.07836 * 4 3 2 30 30 H 1.09004 * 109.46884 * 83.21849 * 5 4 3 31 31 H 1.08997 * 109.47176 * 203.21679 * 5 4 3 32 32 H 1.08997 * 109.46868 * 323.22361 * 5 4 3 33 33 H 1.09002 * 110.32097 * 122.10914 * 8 6 3 34 34 H 1.08996 * 110.32513 * 359.90146 * 8 6 3 35 35 H 1.09004 * 110.41533 * 94.92801 * 9 8 6 36 36 H 1.09000 * 110.41086 * 217.25132 * 9 8 6 37 37 H 1.09002 * 109.47123 * 65.23407 * 13 11 10 38 38 H 1.08994 * 109.47564 * 185.23914 * 13 11 10 39 39 H 1.09000 * 109.47194 * 305.24169 * 13 11 10 40 40 H 0.96995 * 120.00125 * 179.97438 * 17 16 14 41 41 H 1.09002 * 110.39502 * 201.75701 * 22 10 9 42 42 H 1.08996 * 110.49727 * 79.38454 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8116 2.0169 1.3097 5 6 2.7226 1.3556 2.3457 6 6 3.4337 1.4435 -0.3940 7 1 3.5257 1.4007 -1.4792 8 6 4.2194 0.2863 0.2565 9 6 5.2855 0.9711 1.1383 10 7 5.4684 2.3155 0.5331 11 6 6.0537 3.2532 1.5006 12 1 5.4363 3.2814 2.3985 13 6 7.4659 2.7924 1.8671 14 6 6.1169 4.6299 0.8908 15 1 5.7577 4.7921 -0.1147 16 6 6.6322 5.6824 1.6170 17 7 7.0692 5.4850 2.8417 18 14 6.7099 7.3891 0.8615 19 1 5.3391 7.8358 0.5058 20 1 7.3006 8.3372 1.8400 21 1 7.5512 7.3511 -0.3617 22 6 4.0912 2.7302 0.1495 23 1 -0.3633 0.4292 0.9338 24 1 -0.3634 0.5941 -0.8385 25 1 -0.3633 -1.0232 -0.0952 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0486 3.0788 1.2425 29 1 0.7710 1.8954 1.6106 30 1 3.7152 1.8032 2.2950 31 1 2.3074 1.5044 3.3424 32 1 2.7944 0.2881 2.1376 33 1 4.6971 -0.3246 -0.5095 34 1 3.5563 -0.3241 0.8695 35 1 4.9293 1.0614 2.1645 36 1 6.2200 0.4108 1.1091 37 1 8.1075 2.8529 0.9880 38 1 7.8649 3.4338 2.6529 39 1 7.4315 1.7622 2.2214 40 1 7.4321 6.2255 3.3525 41 1 4.1271 3.4955 -0.6258 42 1 3.5468 3.0970 1.0197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062979904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:34 Heat of formation + Delta-G solvation = 24.533052 kcal Electronic energy + Delta-G solvation = -18988.137381 eV Core-core repulsion = 16389.813050 eV Total energy + Delta-G solvation = -2598.324331 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.54715 -37.88085 -35.22230 -32.82152 -32.30139 -30.78899 -29.91605 -27.62523 -26.89914 -24.81969 -23.02630 -22.51446 -21.35822 -19.86857 -18.47554 -17.45460 -17.31343 -16.65085 -16.30549 -15.46174 -14.99038 -14.81051 -14.64066 -14.23182 -14.03230 -13.74121 -13.39752 -13.05333 -12.96515 -12.85141 -12.69677 -12.59752 -12.39180 -12.30369 -12.24083 -12.06429 -11.86265 -11.68585 -11.62591 -11.32852 -11.11710 -10.88413 -10.54209 -9.21731 -8.91431 -8.12915 -6.24183 1.40829 1.42390 1.50103 2.41260 2.92901 3.15932 3.55468 3.73081 3.88943 4.00267 4.16144 4.20721 4.35935 4.37535 4.43065 4.57567 4.66758 4.72305 4.74392 4.77381 4.87088 4.97753 4.98963 5.03196 5.06094 5.10385 5.14186 5.19683 5.21380 5.31376 5.35518 5.45749 5.50654 5.69345 5.72069 6.09396 6.21733 6.27319 6.35182 6.65356 6.89221 7.45059 8.93242 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033071 B = 0.006774 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.469164 B = 4132.589392 C = 4462.490300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.532 5.532 4 C 0.046 3.954 5 C -0.211 4.211 6 C 0.088 3.912 7 H 0.090 0.910 8 C -0.146 4.146 9 C 0.019 3.981 10 N -0.515 5.515 11 C 0.212 3.788 12 H -0.034 1.034 13 C -0.116 4.116 14 C -0.520 4.520 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.920 5.920 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.273 1.273 22 C 0.038 3.962 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.262 0.738 41 H 0.054 0.946 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.807 -11.352 -3.418 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 N -0.255 5.255 4 C -0.082 4.082 5 C -0.269 4.269 6 C -0.021 4.021 7 H 0.108 0.892 8 C -0.185 4.185 9 C -0.109 4.109 10 N -0.239 5.239 11 C 0.105 3.895 12 H -0.016 1.016 13 C -0.175 4.175 14 C -0.558 4.558 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.090 4.090 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.635 -10.988 -4.084 15.828 hybrid contribution 0.493 0.892 1.280 1.636 sum -10.143 -10.096 -2.804 14.583 Atomic orbital electron populations 1.21746 0.93909 1.02253 1.01976 1.22263 0.96655 0.88281 1.01272 1.62528 1.16619 1.18576 1.27808 1.22194 0.99781 0.98694 0.87483 1.23142 1.01450 1.02163 1.00168 1.22424 0.86388 0.93548 0.99778 0.89236 1.23168 0.97520 0.98216 0.99626 1.23380 0.98852 0.91618 0.97018 1.65457 1.18481 1.02151 1.37860 1.19153 0.91712 0.90487 0.88189 1.01628 1.21584 0.98398 0.97425 1.00069 1.21328 1.40766 0.93419 1.00279 0.92945 1.25683 0.94988 1.02613 0.95270 1.70016 1.42544 1.32665 1.10705 0.85621 0.78459 0.79429 0.78190 1.19779 1.20776 1.19785 1.23354 0.89319 0.96646 0.99660 0.93022 0.92474 0.90762 0.90276 0.93671 0.92001 0.89331 0.92599 0.92374 0.90658 0.90227 0.88955 0.93839 0.91440 0.95360 0.92437 0.95280 0.92932 0.92788 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.88 71.98 0.71 -1.70 16 2 C 0.04 0.87 4.50 86.30 0.39 1.25 16 3 N -0.53 -14.15 4.89 -865.75 -4.24 -18.39 16 4 C 0.05 1.28 5.39 86.30 0.47 1.75 16 5 C -0.21 -6.04 7.57 71.98 0.54 -5.50 16 6 C 0.09 2.67 3.50 45.81 0.16 2.83 16 7 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 8 C -0.15 -4.08 5.22 31.49 0.16 -3.91 16 9 C 0.02 0.69 4.79 86.45 0.41 1.10 16 10 N -0.51 -22.46 5.19 -859.89 -4.46 -26.92 16 11 C 0.21 11.01 1.77 44.17 0.08 11.09 16 12 H -0.03 -1.93 7.51 -2.38 -0.02 -1.95 16 13 C -0.12 -5.88 8.95 71.98 0.64 -5.24 16 14 C -0.52 -29.30 8.10 25.60 0.21 -29.10 16 15 H 0.05 2.98 6.97 -2.91 -0.02 2.96 16 16 C 0.01 0.74 5.30 84.65 0.45 1.19 16 17 N -0.92 -53.63 11.38 21.45 0.24 -53.39 16 18 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.04 1.52 4.48 86.39 0.39 1.91 16 23 H 0.05 0.89 6.86 -2.39 -0.02 0.87 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.51 7.91 -2.39 -0.02 1.49 16 27 H 0.05 0.90 4.94 -2.39 -0.01 0.89 16 28 H 0.06 2.03 6.09 -2.38 -0.01 2.01 16 29 H 0.09 2.09 6.59 -2.39 -0.02 2.07 16 30 H 0.06 2.00 2.61 -2.38 -0.01 1.99 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.90 4.15 -2.39 -0.01 1.89 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.09 2.23 3.69 -2.39 -0.01 2.22 16 35 H 0.04 1.61 4.96 -2.39 -0.01 1.60 16 36 H 0.07 2.37 7.57 -2.39 -0.02 2.35 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 3.17 6.23 -2.39 -0.01 3.15 16 39 H 0.03 1.28 6.83 -2.39 -0.02 1.26 16 40 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.05 2.34 7.43 -2.39 -0.02 2.32 16 42 H 0.05 2.18 3.63 -2.39 -0.01 2.17 16 Total: -1.00 -60.48 292.90 -0.81 -61.29 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.01 Total: 15.15 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.61 Total: -24.31 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -8.45 Total: -98.69 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -60.48 -0.81 -61.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062979904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.819 kcal (2) G-P(sol) polarization free energy of solvation -60.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds