Wall clock time and date at job start Mon Mar 30 2020 04:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47107 * 2 1 4 4 C 1.46898 * 110.99927 * 66.04853 * 3 2 1 5 5 C 1.53000 * 109.47102 * 66.70162 * 4 3 2 6 6 C 1.46894 * 110.99787 * 190.00282 * 3 2 1 7 7 H 1.09003 * 110.65023 * 299.50982 * 6 3 2 8 8 C 1.54600 * 110.72802 * 62.66858 * 6 3 2 9 9 C 1.53987 * 105.14187 * 140.31368 * 8 6 3 10 10 N 1.47903 * 107.06025 * 1.22379 * 9 8 6 11 11 C 1.46906 * 111.00304 * 214.15827 * 10 9 8 12 12 H 1.08994 * 109.46613 * 56.21905 * 11 10 9 13 13 C 1.53000 * 109.46978 * 176.22052 * 11 10 9 14 14 C 1.50702 * 109.46698 * 296.21928 * 11 10 9 15 15 H 1.07999 * 120.00322 * 355.44867 * 14 11 10 16 16 C 1.37878 * 119.99617 * 175.45589 * 14 11 10 17 17 N 1.31512 * 120.00021 * 180.02562 * 16 14 11 18 18 Si 1.86796 * 120.00034 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.46940 * 90.00526 * 18 16 14 20 20 H 1.48498 * 109.47294 * 210.00289 * 18 16 14 21 21 H 1.48500 * 109.47456 * 330.00273 * 18 16 14 22 22 C 1.48538 * 105.81904 * 334.67241 * 10 9 8 23 23 H 1.08999 * 109.47264 * 60.00135 * 1 2 3 24 24 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47364 * 299.99565 * 1 2 3 26 26 H 1.09008 * 109.47193 * 240.00292 * 2 1 3 27 27 H 1.08996 * 109.47308 * 120.00403 * 2 1 3 28 28 H 1.08996 * 109.47319 * 186.70018 * 4 3 2 29 29 H 1.09005 * 109.46767 * 306.70539 * 4 3 2 30 30 H 1.08999 * 109.47131 * 305.66161 * 5 4 3 31 31 H 1.08996 * 109.47443 * 65.66041 * 5 4 3 32 32 H 1.09002 * 109.47011 * 185.66347 * 5 4 3 33 33 H 1.08999 * 110.30700 * 21.39517 * 8 6 3 34 34 H 1.09003 * 110.39171 * 259.27064 * 8 6 3 35 35 H 1.09000 * 109.92247 * 120.57380 * 9 8 6 36 36 H 1.09000 * 109.91905 * 241.87162 * 9 8 6 37 37 H 1.08999 * 109.47460 * 299.99904 * 13 11 10 38 38 H 1.09004 * 109.47408 * 59.99948 * 13 11 10 39 39 H 1.08994 * 109.46795 * 179.97438 * 13 11 10 40 40 H 0.97000 * 120.00012 * 179.97438 * 17 16 14 41 41 H 1.08997 * 110.66284 * 280.76852 * 22 10 9 42 42 H 1.09004 * 110.66591 * 157.63950 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 2.4346 1.4256 2.4131 6 6 3.4684 1.4311 -0.2382 7 1 4.0037 0.8905 0.5424 8 6 3.8120 0.8602 -1.6333 9 6 4.9219 1.7766 -2.1806 10 7 5.2058 2.7853 -1.1369 11 6 5.5622 4.0780 -1.7371 12 1 4.7630 4.4015 -2.4038 13 6 5.7562 5.1174 -0.6313 14 6 6.8416 3.9326 -2.5200 15 1 7.3792 2.9959 -2.5071 16 6 7.3261 4.9954 -3.2526 17 7 8.4423 4.8684 -3.9362 18 14 6.3961 6.6153 -3.2752 19 1 6.8796 7.4791 -2.1683 20 1 6.6251 7.2994 -4.5732 21 1 4.9443 6.3551 -3.1023 22 6 3.9621 2.8967 -0.3325 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9381 3.1209 1.1804 29 1 0.5984 1.9757 1.4300 30 1 2.2448 0.3523 2.4241 31 1 3.5025 1.6043 2.2876 32 1 2.1012 1.8631 3.3542 33 1 2.9373 0.8961 -2.2826 34 1 4.1757 -0.1636 -1.5456 35 1 5.8188 1.1919 -2.3856 36 1 4.5809 2.2699 -3.0908 37 1 4.8308 5.2226 -0.0650 38 1 6.5554 4.7938 0.0355 39 1 6.0210 6.0764 -1.0766 40 1 8.7829 5.6161 -4.4519 41 1 3.2273 3.5181 -0.8443 42 1 4.1796 3.2939 0.6591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062979905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:36 Heat of formation + Delta-G solvation = 13.458074 kcal Electronic energy + Delta-G solvation = -18477.576403 eV Core-core repulsion = 15878.771825 eV Total energy + Delta-G solvation = -2598.804578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38416 -36.99628 -33.52858 -31.58498 -31.50021 -29.35646 -28.08839 -26.79595 -24.79251 -24.01518 -21.53018 -21.01759 -19.36894 -19.02011 -16.71114 -16.39212 -15.87589 -15.07603 -14.84343 -14.19124 -13.60448 -13.40332 -13.27277 -13.14833 -12.72827 -12.47824 -12.29451 -12.12979 -12.00229 -11.86784 -11.65046 -11.31482 -11.04048 -10.79185 -10.68062 -10.49163 -10.47462 -10.32276 -10.17697 -10.01952 -9.53162 -9.04598 -8.54042 -8.20521 -7.39853 -6.04049 -4.02164 3.28338 3.38392 3.39779 3.90709 4.42484 4.84020 4.85958 5.06935 5.13345 5.15247 5.24455 5.27063 5.30146 5.37943 5.48822 5.51904 5.59249 5.73771 5.85385 5.92291 5.95843 6.03475 6.11646 6.18728 6.20426 6.27574 6.34126 6.42543 6.52132 6.55782 6.64202 6.80186 6.83761 7.15428 7.19230 7.31945 7.61820 7.94619 8.03228 8.68321 9.04379 9.58581 11.09107 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038479 B = 0.005939 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.495660 B = 4713.333913 C = 4962.767918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.530 5.530 4 C 0.046 3.954 5 C -0.193 4.193 6 C 0.078 3.922 7 H 0.055 0.945 8 C -0.125 4.125 9 C 0.056 3.944 10 N -0.502 5.502 11 C 0.174 3.826 12 H 0.001 0.999 13 C -0.143 4.143 14 C -0.501 4.501 15 H 0.081 0.919 16 C 0.070 3.930 17 N -0.900 5.900 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.044 3.956 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.026 0.974 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.044 0.956 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 -7.554 9.330 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.254 5.254 4 C -0.082 4.082 5 C -0.251 4.251 6 C -0.031 4.031 7 H 0.073 0.927 8 C -0.163 4.163 9 C -0.073 4.073 10 N -0.227 5.227 11 C 0.066 3.934 12 H 0.019 0.981 13 C -0.201 4.201 14 C -0.539 4.539 15 H 0.099 0.901 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.709 3.291 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.193 1.193 22 C -0.084 4.084 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.270 -7.357 9.120 18.464 hybrid contribution -0.594 0.859 0.120 1.051 sum -14.864 -6.497 9.240 18.669 Atomic orbital electron populations 1.21794 0.95246 1.01141 1.02321 1.22101 0.95661 0.89655 1.00884 1.62353 1.13949 1.15440 1.33646 1.22185 0.99706 0.98988 0.87295 1.22424 1.01960 1.01191 0.99557 1.22571 0.86219 0.97326 0.96982 0.92710 1.22533 0.99005 0.98987 0.95804 1.22564 0.96840 0.93616 0.94270 1.64722 1.28028 1.09289 1.20624 1.19909 0.96724 0.85206 0.91579 0.98138 1.22130 0.99480 0.98921 0.99559 1.20934 1.05823 1.00598 1.26581 0.90131 1.24908 0.94761 0.98401 0.95065 1.69884 1.20759 1.31887 1.31380 0.86942 0.81034 0.84569 0.76509 1.20413 1.22209 1.19253 1.23147 0.92093 0.94318 0.98880 0.91958 0.92659 0.92826 0.90692 0.94792 0.90524 0.90872 0.92713 0.91923 0.92388 0.91110 0.92041 0.90755 0.93655 0.95510 0.92220 0.93973 0.92687 0.93750 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.85 37.16 0.37 -0.99 16 2 C 0.04 0.49 5.40 -3.82 -0.02 0.47 16 3 N -0.53 -6.80 4.54 -224.42 -1.02 -7.82 16 4 C 0.05 0.52 5.63 -3.83 -0.02 0.50 16 5 C -0.19 -2.02 9.16 37.16 0.34 -1.68 16 6 C 0.08 1.15 2.13 -65.85 -0.14 1.01 16 7 H 0.06 0.83 6.66 -51.93 -0.35 0.48 16 8 C -0.12 -1.92 5.34 -25.38 -0.14 -2.06 16 9 C 0.06 1.09 5.88 -2.76 -0.02 1.07 16 10 N -0.50 -10.65 5.10 -223.88 -1.14 -11.79 16 11 C 0.17 4.21 1.34 -68.86 -0.09 4.12 16 12 H 0.00 0.03 6.72 -51.93 -0.35 -0.32 16 13 C -0.14 -3.21 8.59 37.16 0.32 -2.89 16 14 C -0.50 -14.22 8.63 -34.44 -0.30 -14.51 16 15 H 0.08 2.50 7.89 -52.49 -0.41 2.08 16 16 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 18 Si 0.88 22.11 24.61 -169.99 -4.18 17.92 16 19 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.27 -6.52 6.41 56.52 0.36 -6.15 16 22 C 0.04 0.78 3.70 -1.89 -0.01 0.77 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.47 6.42 -51.93 -0.33 0.14 16 26 H 0.07 0.83 6.82 -51.92 -0.35 0.48 16 27 H 0.03 0.36 6.15 -51.93 -0.32 0.04 16 28 H 0.08 0.93 7.19 -51.93 -0.37 0.55 16 29 H 0.07 0.74 6.19 -51.93 -0.32 0.41 16 30 H 0.05 0.55 6.23 -51.93 -0.32 0.23 16 31 H 0.06 0.74 6.78 -51.93 -0.35 0.39 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.51 8.11 -51.93 -0.42 1.09 16 36 H 0.05 0.95 7.67 -51.93 -0.40 0.55 16 37 H 0.03 0.51 6.91 -51.93 -0.36 0.16 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.04 0.97 3.88 -51.93 -0.20 0.77 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.04 0.82 8.01 -51.93 -0.42 0.41 16 42 H 0.07 1.17 7.57 -51.93 -0.39 0.78 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -29.84 305.78 -8.15 -37.99 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.38 Total: -1.73 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 0.20 Total: -12.25 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -1.39 Total: -46.54 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.18 Total: 17.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.84 -8.15 -37.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062979905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.447 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds