Wall clock time and date at job start Mon Mar 30 2020 04:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47107 * 2 1 4 4 C 1.46898 * 110.99927 * 66.04853 * 3 2 1 5 5 C 1.53000 * 109.47102 * 66.70162 * 4 3 2 6 6 C 1.46894 * 110.99787 * 190.00282 * 3 2 1 7 7 H 1.09003 * 110.65023 * 299.50982 * 6 3 2 8 8 C 1.54600 * 110.72802 * 62.66858 * 6 3 2 9 9 C 1.53987 * 105.14187 * 140.31368 * 8 6 3 10 10 N 1.47903 * 107.06025 * 1.22379 * 9 8 6 11 11 C 1.46906 * 111.00304 * 214.15827 * 10 9 8 12 12 H 1.08994 * 109.46613 * 56.21905 * 11 10 9 13 13 C 1.53000 * 109.46978 * 176.22052 * 11 10 9 14 14 C 1.50702 * 109.46698 * 296.21928 * 11 10 9 15 15 H 1.07999 * 120.00322 * 355.44867 * 14 11 10 16 16 C 1.37878 * 119.99617 * 175.45589 * 14 11 10 17 17 N 1.31512 * 120.00021 * 180.02562 * 16 14 11 18 18 Si 1.86796 * 120.00034 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.46940 * 90.00526 * 18 16 14 20 20 H 1.48498 * 109.47294 * 210.00289 * 18 16 14 21 21 H 1.48500 * 109.47456 * 330.00273 * 18 16 14 22 22 C 1.48538 * 105.81904 * 334.67241 * 10 9 8 23 23 H 1.08999 * 109.47264 * 60.00135 * 1 2 3 24 24 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47364 * 299.99565 * 1 2 3 26 26 H 1.09008 * 109.47193 * 240.00292 * 2 1 3 27 27 H 1.08996 * 109.47308 * 120.00403 * 2 1 3 28 28 H 1.08996 * 109.47319 * 186.70018 * 4 3 2 29 29 H 1.09005 * 109.46767 * 306.70539 * 4 3 2 30 30 H 1.08999 * 109.47131 * 305.66161 * 5 4 3 31 31 H 1.08996 * 109.47443 * 65.66041 * 5 4 3 32 32 H 1.09002 * 109.47011 * 185.66347 * 5 4 3 33 33 H 1.08999 * 110.30700 * 21.39517 * 8 6 3 34 34 H 1.09003 * 110.39171 * 259.27064 * 8 6 3 35 35 H 1.09000 * 109.92247 * 120.57380 * 9 8 6 36 36 H 1.09000 * 109.91905 * 241.87162 * 9 8 6 37 37 H 1.08999 * 109.47460 * 299.99904 * 13 11 10 38 38 H 1.09004 * 109.47408 * 59.99948 * 13 11 10 39 39 H 1.08994 * 109.46795 * 179.97438 * 13 11 10 40 40 H 0.97000 * 120.00012 * 179.97438 * 17 16 14 41 41 H 1.08997 * 110.66284 * 280.76852 * 22 10 9 42 42 H 1.09004 * 110.66591 * 157.63950 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 2.4346 1.4256 2.4131 6 6 3.4684 1.4311 -0.2382 7 1 4.0037 0.8905 0.5424 8 6 3.8120 0.8602 -1.6333 9 6 4.9219 1.7766 -2.1806 10 7 5.2058 2.7853 -1.1369 11 6 5.5622 4.0780 -1.7371 12 1 4.7630 4.4015 -2.4038 13 6 5.7562 5.1174 -0.6313 14 6 6.8416 3.9326 -2.5200 15 1 7.3792 2.9959 -2.5071 16 6 7.3261 4.9954 -3.2526 17 7 8.4423 4.8684 -3.9362 18 14 6.3961 6.6153 -3.2752 19 1 6.8796 7.4791 -2.1683 20 1 6.6251 7.2994 -4.5732 21 1 4.9443 6.3551 -3.1023 22 6 3.9621 2.8967 -0.3325 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9381 3.1209 1.1804 29 1 0.5984 1.9757 1.4300 30 1 2.2448 0.3523 2.4241 31 1 3.5025 1.6043 2.2876 32 1 2.1012 1.8631 3.3542 33 1 2.9373 0.8961 -2.2826 34 1 4.1757 -0.1636 -1.5456 35 1 5.8188 1.1919 -2.3856 36 1 4.5809 2.2699 -3.0908 37 1 4.8308 5.2226 -0.0650 38 1 6.5554 4.7938 0.0355 39 1 6.0210 6.0764 -1.0766 40 1 8.7829 5.6161 -4.4519 41 1 3.2273 3.5181 -0.8443 42 1 4.1796 3.2939 0.6591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062979905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:35 Heat of formation + Delta-G solvation = -8.222510 kcal Electronic energy + Delta-G solvation = -18478.516544 eV Core-core repulsion = 15878.771825 eV Total energy + Delta-G solvation = -2599.744718 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65469 -38.34368 -35.36917 -33.44083 -32.40544 -30.61035 -29.64021 -28.07350 -26.75911 -24.95874 -22.98080 -22.26404 -21.11341 -20.14773 -18.81511 -17.53586 -17.30025 -16.49633 -16.12197 -15.62190 -15.10895 -14.88798 -14.74498 -14.41192 -14.04854 -13.94771 -13.81767 -13.50693 -13.10236 -13.00606 -12.83095 -12.55106 -12.46342 -12.27539 -12.14607 -12.04195 -11.90421 -11.71357 -11.53605 -11.48684 -11.28376 -11.10831 -10.74696 -9.18043 -9.11701 -8.29413 -6.32486 1.28704 1.33363 1.43136 2.30800 2.84555 3.04529 3.45083 3.66678 3.84736 4.06458 4.19362 4.31602 4.37055 4.40466 4.42669 4.51749 4.58273 4.65323 4.66365 4.73493 4.73994 4.75713 4.85158 4.93987 4.96976 5.02737 5.08647 5.15586 5.16992 5.19342 5.23564 5.30050 5.41900 5.48973 5.64766 5.98836 6.12901 6.24469 6.31909 6.64244 6.73698 7.32615 8.87479 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038479 B = 0.005939 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.495660 B = 4713.333913 C = 4962.767918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.538 5.538 4 C 0.045 3.955 5 C -0.187 4.187 6 C 0.091 3.909 7 H 0.057 0.943 8 C -0.112 4.112 9 C 0.054 3.946 10 N -0.518 5.518 11 C 0.178 3.822 12 H -0.010 1.010 13 C -0.138 4.138 14 C -0.504 4.504 15 H 0.036 0.964 16 C 0.014 3.986 17 N -0.948 5.948 18 Si 0.943 3.057 19 H -0.261 1.261 20 H -0.293 1.293 21 H -0.253 1.253 22 C 0.048 3.952 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.038 0.962 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 -7.410 11.014 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 N -0.262 5.262 4 C -0.083 4.083 5 C -0.245 4.245 6 C -0.018 4.018 7 H 0.075 0.925 8 C -0.150 4.150 9 C -0.075 4.075 10 N -0.243 5.243 11 C 0.070 3.930 12 H 0.007 0.993 13 C -0.196 4.196 14 C -0.543 4.543 15 H 0.055 0.945 16 C -0.183 4.183 17 N -0.588 5.588 18 Si 0.769 3.231 19 H -0.187 1.187 20 H -0.221 1.221 21 H -0.178 1.178 22 C -0.080 4.080 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.868 -7.230 10.829 21.309 hybrid contribution 0.228 0.697 -0.397 0.834 sum -16.641 -6.533 10.432 20.698 Atomic orbital electron populations 1.21753 0.93796 1.02194 1.02190 1.22181 0.96789 0.88399 1.01077 1.62335 1.12060 1.16947 1.34894 1.22243 1.00817 0.98370 0.86853 1.22357 1.00729 1.01541 0.99897 1.22346 0.87915 0.95121 0.96428 0.92548 1.22428 0.97562 0.98844 0.96186 1.22535 0.97566 0.93819 0.93558 1.64610 1.30647 1.08018 1.20979 1.19722 0.94060 0.87416 0.91836 0.99254 1.22020 1.01021 0.97616 0.98910 1.21139 1.07082 0.98867 1.27169 0.94521 1.25746 0.95591 1.02358 0.94638 1.70033 1.22771 1.33287 1.32752 0.85914 0.80315 0.79915 0.76962 1.18700 1.22062 1.17752 1.23162 0.90250 0.96335 0.98263 0.92766 0.91077 0.92226 0.90975 0.94120 0.91368 0.89207 0.92213 0.93528 0.90954 0.90337 0.90191 0.92684 0.95828 0.92191 0.92676 0.94541 0.92502 0.94365 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.85 71.98 0.71 -1.45 16 2 C 0.04 0.81 5.40 86.30 0.47 1.27 16 3 N -0.54 -12.41 4.54 -863.94 -3.93 -16.33 16 4 C 0.04 0.88 5.63 86.30 0.49 1.37 16 5 C -0.19 -3.37 9.16 71.98 0.66 -2.71 16 6 C 0.09 2.53 2.13 46.12 0.10 2.63 16 7 H 0.06 1.58 6.66 -2.39 -0.02 1.56 16 8 C -0.11 -3.31 5.34 31.47 0.17 -3.14 16 9 C 0.05 2.15 5.88 86.44 0.51 2.66 16 10 N -0.52 -21.98 5.10 -862.22 -4.40 -26.38 16 11 C 0.18 8.65 1.34 44.17 0.06 8.70 16 12 H -0.01 -0.50 6.72 -2.39 -0.02 -0.52 16 13 C -0.14 -5.96 8.59 71.98 0.62 -5.34 16 14 C -0.50 -29.54 8.63 25.60 0.22 -29.32 16 15 H 0.04 2.41 7.89 -2.91 -0.02 2.38 16 16 C 0.01 0.82 5.45 84.66 0.46 1.28 16 17 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 18 Si 0.94 45.51 24.61 68.60 1.69 47.20 16 19 H -0.26 -11.91 6.87 99.48 0.68 -11.22 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 21 H -0.25 -11.57 6.41 99.48 0.64 -10.93 16 22 C 0.05 1.61 3.70 86.65 0.32 1.94 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.84 6.42 -2.39 -0.02 0.82 16 26 H 0.07 1.40 6.82 -2.38 -0.02 1.38 16 27 H 0.04 0.73 6.15 -2.39 -0.01 0.71 16 28 H 0.07 1.47 7.19 -2.39 -0.02 1.45 16 29 H 0.09 1.49 6.19 -2.38 -0.01 1.48 16 30 H 0.06 1.02 6.23 -2.39 -0.01 1.01 16 31 H 0.05 0.99 6.78 -2.39 -0.02 0.98 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 2.22 7.85 -2.39 -0.02 2.20 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 2.35 8.11 -2.39 -0.02 2.33 16 36 H 0.02 1.02 7.67 -2.39 -0.02 1.00 16 37 H 0.06 2.17 6.91 -2.39 -0.02 2.15 16 38 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.04 1.60 3.88 -2.39 -0.01 1.59 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.04 1.35 8.01 -2.39 -0.02 1.33 16 42 H 0.08 2.50 7.57 -2.38 -0.02 2.48 16 Total: -1.00 -65.63 305.78 -0.68 -66.31 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.88 Total: 11.15 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.78 Total: -22.12 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -8.02 Total: -102.54 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.69 Total: 47.20 kcal Total: -65.63 -0.68 -66.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062979905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.086 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds