Wall clock time and date at job start Mon Mar 30 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47518 * 2 1 4 4 C 1.50700 * 109.47190 * 239.99692 * 2 1 3 5 5 H 1.08000 * 120.00104 * 240.00343 * 4 2 1 6 6 C 1.37873 * 119.99825 * 60.00024 * 4 2 1 7 7 N 1.31518 * 120.00102 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99930 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47114 * 60.00321 * 8 6 4 10 10 H 1.48504 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47186 * 300.00220 * 8 6 4 12 12 N 1.46901 * 109.47019 * 119.99807 * 2 1 3 13 13 C 1.46903 * 111.00058 * 63.77603 * 12 2 1 14 14 C 1.46900 * 111.00294 * 299.82557 * 12 2 1 15 15 H 1.08996 * 109.62764 * 64.08130 * 14 12 2 16 16 C 1.54245 * 109.78642 * 303.59773 * 14 12 2 17 17 C 1.45545 * 112.40712 * 160.20600 * 16 14 12 18 18 C 1.54238 * 112.40784 * 61.93297 * 17 16 14 19 19 C 1.50466 * 108.52647 * 280.02156 * 18 17 16 20 20 C 1.54062 * 112.49904 * 94.14575 * 19 18 17 21 21 C 1.50473 * 109.63482 * 184.47902 * 14 12 2 22 22 H 1.09009 * 108.86868 * 334.83130 * 21 14 12 23 23 N 1.46897 * 108.79982 * 93.32822 * 21 14 12 24 24 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47126 * 300.00112 * 1 2 3 26 26 H 1.08996 * 109.47374 * 60.00227 * 1 2 3 27 27 H 0.96996 * 119.99710 * 179.97438 * 7 6 4 28 28 H 1.08991 * 109.47238 * 288.63601 * 13 12 2 29 29 H 1.09002 * 109.46767 * 48.63838 * 13 12 2 30 30 H 1.09004 * 109.47239 * 168.63143 * 13 12 2 31 31 H 1.08997 * 108.89938 * 280.95961 * 16 14 12 32 32 H 1.09005 * 108.89370 * 39.55172 * 16 14 12 33 33 H 1.09005 * 108.89588 * 301.18217 * 17 16 14 34 34 H 1.08995 * 108.89961 * 182.69722 * 17 16 14 35 35 H 1.08997 * 109.63196 * 160.30270 * 18 17 16 36 36 H 1.09003 * 109.62790 * 39.72990 * 18 17 16 37 37 H 1.09003 * 108.87871 * 214.92389 * 19 18 17 38 38 H 1.09001 * 108.87553 * 333.46381 * 19 18 17 39 39 H 1.09004 * 108.81641 * 79.14294 * 20 19 18 40 40 H 1.09001 * 108.81783 * 197.41748 * 20 19 18 41 41 H 1.00895 * 110.99989 * 182.93153 * 23 21 14 42 42 H 1.00905 * 110.99892 * 306.88224 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0081 10 1 1.8269 -0.4201 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 1.6237 -2.1071 1.1892 14 6 1.5520 -0.0239 2.4211 15 1 0.4652 -0.0836 2.4780 16 6 1.9897 1.4550 2.4072 17 6 1.2015 2.2755 3.3149 18 6 1.3482 1.8328 4.7851 19 6 0.4602 0.6402 5.0161 20 6 1.2081 -0.6949 4.8384 21 6 2.1587 -0.6904 3.6261 22 1 2.4094 -1.7201 3.3706 23 7 3.3908 0.0216 3.9907 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7087 1.1611 -3.4844 28 1 0.5511 -2.1855 1.3658 29 1 1.8655 -2.5449 0.2207 30 1 2.1611 -2.6405 1.9733 31 1 3.0386 1.5155 2.6974 32 1 1.8807 1.8459 1.3955 33 1 0.1517 2.2090 3.0293 34 1 1.5249 3.3124 3.2245 35 1 1.0470 2.6468 5.4444 36 1 2.3849 1.5613 4.9841 37 1 0.0611 0.6887 6.0293 38 1 -0.3686 0.6754 4.3091 39 1 1.7882 -0.8955 5.7392 40 1 0.4770 -1.4929 4.7089 41 1 3.8515 -0.4276 4.7679 42 1 4.0111 0.0997 3.1987 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:33 Heat of formation + Delta-G solvation = 13.758027 kcal Electronic energy + Delta-G solvation = -19174.151219 eV Core-core repulsion = 16575.359649 eV Total energy + Delta-G solvation = -2598.791571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.57808 -36.16421 -33.47522 -32.54628 -31.44317 -28.94341 -28.07982 -25.37373 -24.99184 -23.68213 -22.72329 -20.12362 -19.35181 -17.87066 -16.51800 -16.07552 -15.49681 -14.77649 -14.53876 -13.94925 -13.82232 -13.27760 -13.10260 -12.89489 -12.64737 -12.29165 -11.88239 -11.66152 -11.29294 -11.10728 -11.00655 -10.75730 -10.71433 -10.62642 -10.40634 -10.37819 -10.10210 -9.98954 -9.86378 -9.68441 -9.32276 -8.73101 -8.31500 -8.03931 -7.05597 -5.98594 -4.02186 3.32736 3.37343 3.39866 4.42231 4.84277 4.92735 5.05604 5.28821 5.31788 5.37170 5.60741 5.62977 5.74872 5.82783 5.90013 6.03437 6.17052 6.22861 6.32495 6.35562 6.43711 6.46398 6.55125 6.67953 6.74132 6.80482 6.86351 6.91193 6.94976 6.98981 7.18393 7.25068 7.53228 7.61351 7.76755 7.81171 7.86911 8.20439 8.44762 8.67269 9.03656 9.62345 11.08268 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038159 B = 0.006885 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.597208 B = 4065.607831 C = 4315.266802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.210 3.790 3 H 0.048 0.952 4 C -0.503 4.503 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.534 5.534 13 C 0.031 3.969 14 C 0.091 3.909 15 H 0.037 0.963 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.126 4.126 19 C -0.109 4.109 20 C -0.107 4.107 21 C 0.096 3.904 22 H 0.040 0.960 23 N -0.833 5.833 24 H 0.024 0.976 25 H 0.009 0.991 26 H 0.086 0.914 27 H 0.260 0.740 28 H 0.011 0.989 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.323 0.677 42 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -1.073 13.006 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.066 0.934 4 C -0.542 4.542 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.258 5.258 13 C -0.118 4.118 14 C -0.018 4.018 15 H 0.054 0.946 16 C -0.153 4.153 17 C -0.140 4.140 18 C -0.163 4.163 19 C -0.147 4.147 20 C -0.145 4.145 21 C -0.015 4.015 22 H 0.057 0.943 23 N -0.365 5.365 24 H 0.044 0.956 25 H 0.028 0.972 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.999 -0.328 12.989 13.031 hybrid contribution -0.356 -1.452 -1.160 1.892 sum 0.642 -1.780 11.829 11.979 Atomic orbital electron populations 1.22373 1.01131 0.99000 1.00464 1.19318 0.89540 0.95040 0.85670 0.93429 1.21143 1.30675 1.12429 0.89945 0.92077 1.24917 0.95249 0.95123 0.98916 1.69880 1.36930 1.23004 1.23418 0.86621 0.79207 0.79590 0.82311 1.20472 1.21404 1.20274 1.62348 1.59521 1.01600 1.02348 1.22293 0.96672 0.91035 1.01762 1.21314 0.96544 0.94437 0.89542 0.94570 1.20470 1.01789 0.93333 0.99660 1.20326 0.99645 0.98806 0.95219 1.21530 1.03163 0.95791 0.95826 1.21230 0.98477 0.94922 1.00062 1.21922 0.97862 0.97322 0.97431 1.21177 0.90703 0.95634 0.93979 0.94266 1.59287 1.08786 1.56384 1.12023 0.95642 0.97206 0.89568 0.92998 0.97074 0.90297 0.94159 0.89932 0.91602 0.93786 0.93265 0.94032 0.87911 0.93489 0.92834 0.92635 0.92846 0.86530 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.29 37.16 0.31 -3.87 16 2 C 0.21 5.22 2.03 -68.87 -0.14 5.08 16 3 H 0.05 1.30 5.86 -51.93 -0.30 1.00 16 4 C -0.50 -13.65 7.78 -34.44 -0.27 -13.92 16 5 H 0.06 1.65 6.48 -52.49 -0.34 1.31 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.53 -11.20 4.65 -229.04 -1.06 -12.26 16 13 C 0.03 0.61 8.35 60.07 0.50 1.11 16 14 C 0.09 1.63 0.93 -68.32 -0.06 1.57 16 15 H 0.04 0.72 5.37 -51.93 -0.28 0.44 16 16 C -0.11 -2.03 4.63 -29.60 -0.14 -2.17 16 17 C -0.10 -1.60 5.26 -29.60 -0.16 -1.75 16 18 C -0.13 -1.71 5.61 -27.35 -0.15 -1.86 16 19 C -0.11 -1.45 5.32 -27.44 -0.15 -1.60 16 20 C -0.11 -1.40 5.55 -25.62 -0.14 -1.54 16 21 C 0.10 1.43 2.95 -68.42 -0.20 1.23 16 22 H 0.04 0.62 5.55 -51.92 -0.29 0.33 16 23 N -0.83 -10.82 5.18 -5.27 -0.03 -10.85 16 24 H 0.02 0.61 6.75 -51.93 -0.35 0.26 16 25 H 0.01 0.21 6.50 -51.93 -0.34 -0.13 16 26 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.01 0.22 6.97 -51.93 -0.36 -0.15 16 29 H 0.08 1.70 5.92 -51.93 -0.31 1.39 16 30 H 0.04 0.70 6.20 -51.93 -0.32 0.37 16 31 H 0.08 1.41 5.47 -51.93 -0.28 1.12 16 32 H 0.07 1.37 5.44 -51.93 -0.28 1.09 16 33 H 0.04 0.72 7.47 -51.93 -0.39 0.34 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 1.41 5.57 -51.93 -0.29 1.12 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.78 6.63 -51.93 -0.34 0.43 16 39 H 0.05 0.65 8.01 -51.93 -0.42 0.23 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.32 3.50 8.93 -39.29 -0.35 3.15 16 42 H 0.35 4.89 7.86 -39.29 -0.31 4.58 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -27.23 291.92 -8.47 -35.71 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.70 Total: 7.71 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -0.69 Total: -16.20 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.46 Total: -47.91 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.23 -8.47 -35.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.464 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds