Wall clock time and date at job start Mon Mar 30 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47518 * 2 1 4 4 C 1.50700 * 109.47190 * 239.99692 * 2 1 3 5 5 H 1.08000 * 120.00104 * 240.00343 * 4 2 1 6 6 C 1.37873 * 119.99825 * 60.00024 * 4 2 1 7 7 N 1.31518 * 120.00102 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99930 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47114 * 60.00321 * 8 6 4 10 10 H 1.48504 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47186 * 300.00220 * 8 6 4 12 12 N 1.46901 * 109.47019 * 119.99807 * 2 1 3 13 13 C 1.46903 * 111.00058 * 63.77603 * 12 2 1 14 14 C 1.46900 * 111.00294 * 299.82557 * 12 2 1 15 15 H 1.08996 * 109.62764 * 64.08130 * 14 12 2 16 16 C 1.54245 * 109.78642 * 303.59773 * 14 12 2 17 17 C 1.45545 * 112.40712 * 160.20600 * 16 14 12 18 18 C 1.54238 * 112.40784 * 61.93297 * 17 16 14 19 19 C 1.50466 * 108.52647 * 280.02156 * 18 17 16 20 20 C 1.54062 * 112.49904 * 94.14575 * 19 18 17 21 21 C 1.50473 * 109.63482 * 184.47902 * 14 12 2 22 22 H 1.09009 * 108.86868 * 334.83130 * 21 14 12 23 23 N 1.46897 * 108.79982 * 93.32822 * 21 14 12 24 24 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47126 * 300.00112 * 1 2 3 26 26 H 1.08996 * 109.47374 * 60.00227 * 1 2 3 27 27 H 0.96996 * 119.99710 * 179.97438 * 7 6 4 28 28 H 1.08991 * 109.47238 * 288.63601 * 13 12 2 29 29 H 1.09002 * 109.46767 * 48.63838 * 13 12 2 30 30 H 1.09004 * 109.47239 * 168.63143 * 13 12 2 31 31 H 1.08997 * 108.89938 * 280.95961 * 16 14 12 32 32 H 1.09005 * 108.89370 * 39.55172 * 16 14 12 33 33 H 1.09005 * 108.89588 * 301.18217 * 17 16 14 34 34 H 1.08995 * 108.89961 * 182.69722 * 17 16 14 35 35 H 1.08997 * 109.63196 * 160.30270 * 18 17 16 36 36 H 1.09003 * 109.62790 * 39.72990 * 18 17 16 37 37 H 1.09003 * 108.87871 * 214.92389 * 19 18 17 38 38 H 1.09001 * 108.87553 * 333.46381 * 19 18 17 39 39 H 1.09004 * 108.81641 * 79.14294 * 20 19 18 40 40 H 1.09001 * 108.81783 * 197.41748 * 20 19 18 41 41 H 1.00895 * 110.99989 * 182.93153 * 23 21 14 42 42 H 1.00905 * 110.99892 * 306.88224 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0081 10 1 1.8269 -0.4201 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 1.6237 -2.1071 1.1892 14 6 1.5520 -0.0239 2.4211 15 1 0.4652 -0.0836 2.4780 16 6 1.9897 1.4550 2.4072 17 6 1.2015 2.2755 3.3149 18 6 1.3482 1.8328 4.7851 19 6 0.4602 0.6402 5.0161 20 6 1.2081 -0.6949 4.8384 21 6 2.1587 -0.6904 3.6261 22 1 2.4094 -1.7201 3.3706 23 7 3.3908 0.0216 3.9907 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7087 1.1611 -3.4844 28 1 0.5511 -2.1855 1.3658 29 1 1.8655 -2.5449 0.2207 30 1 2.1611 -2.6405 1.9733 31 1 3.0386 1.5155 2.6974 32 1 1.8807 1.8459 1.3955 33 1 0.1517 2.2090 3.0293 34 1 1.5249 3.3124 3.2245 35 1 1.0470 2.6468 5.4444 36 1 2.3849 1.5613 4.9841 37 1 0.0611 0.6887 6.0293 38 1 -0.3686 0.6754 4.3091 39 1 1.7882 -0.8955 5.7392 40 1 0.4770 -1.4929 4.7089 41 1 3.8515 -0.4276 4.7679 42 1 4.0111 0.0997 3.1987 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:33 Heat of formation + Delta-G solvation = -4.032546 kcal Electronic energy + Delta-G solvation = -19174.922676 eV Core-core repulsion = 16575.359649 eV Total energy + Delta-G solvation = -2599.563028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97200 -37.77768 -34.90198 -34.27698 -32.72650 -30.73488 -29.48035 -27.29491 -26.63889 -25.08646 -24.10315 -21.74912 -20.68943 -19.29633 -18.38891 -17.48491 -17.02056 -16.56739 -15.78448 -15.43912 -15.32957 -14.82919 -14.47162 -14.41392 -14.07621 -13.80645 -13.52172 -13.06001 -13.04275 -12.82498 -12.63202 -12.56937 -12.39297 -12.22070 -11.99847 -11.92831 -11.53605 -11.37878 -11.20690 -11.08743 -10.95504 -10.69077 -10.35972 -9.15757 -8.77927 -8.09367 -6.19939 1.42323 1.43636 1.51110 2.43041 3.19446 3.36760 3.72771 3.91286 4.04051 4.21579 4.37519 4.41286 4.46724 4.55094 4.61259 4.66067 4.72086 4.77500 4.85971 4.91980 5.05316 5.10440 5.17124 5.20699 5.25997 5.32122 5.34181 5.43487 5.52379 5.57205 5.63474 5.65238 5.76560 5.82190 5.92686 6.24257 6.40694 6.52464 6.80654 6.84880 6.95525 7.48929 8.96630 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038159 B = 0.006885 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.597208 B = 4065.607831 C = 4315.266802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.018 0.982 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.538 5.538 13 C 0.036 3.964 14 C 0.094 3.906 15 H 0.019 0.981 16 C -0.107 4.107 17 C -0.102 4.102 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.104 4.104 21 C 0.103 3.897 22 H 0.035 0.965 23 N -0.828 5.828 24 H 0.023 0.977 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.260 0.740 28 H 0.007 0.993 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.029 0.971 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.341 0.659 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -2.003 14.778 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.110 3.890 3 H 0.036 0.964 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.261 5.261 13 C -0.112 4.112 14 C -0.014 4.014 15 H 0.036 0.964 16 C -0.145 4.145 17 C -0.140 4.140 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.142 4.142 21 C -0.009 4.009 22 H 0.053 0.947 23 N -0.361 5.361 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.155 0.845 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.782 -1.271 14.790 14.951 hybrid contribution -0.594 -1.132 -1.670 2.103 sum 1.187 -2.403 13.120 13.391 Atomic orbital electron populations 1.22162 1.01206 0.98428 0.99527 1.19033 0.89259 0.93719 0.86974 0.96423 1.21455 1.30630 1.12464 0.91104 0.92267 1.25694 0.95446 0.95799 1.01838 1.70021 1.37907 1.24253 1.23934 0.85623 0.78754 0.78616 0.78680 1.19753 1.21177 1.19713 1.62277 1.59506 1.02164 1.02155 1.22260 0.96872 0.90336 1.01774 1.21349 0.95684 0.94742 0.89657 0.96353 1.20414 1.02783 0.93406 0.97870 1.20317 0.98257 0.98820 0.96626 1.21474 1.03535 0.96495 0.93945 1.21239 0.97864 0.94842 1.00841 1.21907 0.97729 0.97300 0.97275 1.21038 0.91700 0.94863 0.93269 0.94690 1.59182 1.08261 1.56266 1.12344 0.95804 0.96204 0.92310 0.93091 0.97404 0.92249 0.91082 0.89066 0.95652 0.95252 0.92739 0.92459 0.87508 0.91296 0.94684 0.90257 0.92676 0.84496 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.79 8.29 71.98 0.60 -7.19 16 2 C 0.22 11.10 2.03 44.17 0.09 11.19 16 3 H 0.02 1.03 5.86 -2.39 -0.01 1.02 16 4 C -0.52 -28.59 7.78 25.60 0.20 -28.40 16 5 H 0.06 3.23 6.48 -2.91 -0.02 3.21 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.55 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 N -0.54 -22.62 4.65 -878.54 -4.08 -26.71 16 13 C 0.04 1.39 8.35 127.69 1.07 2.46 16 14 C 0.09 3.36 0.93 44.52 0.04 3.40 16 15 H 0.02 0.73 5.37 -2.39 -0.01 0.72 16 16 C -0.11 -3.81 4.63 28.74 0.13 -3.68 16 17 C -0.10 -3.15 5.26 28.74 0.15 -3.00 16 18 C -0.12 -2.90 5.61 30.19 0.17 -2.73 16 19 C -0.11 -2.64 5.32 30.13 0.16 -2.48 16 20 C -0.10 -2.40 5.55 31.31 0.17 -2.22 16 21 C 0.10 2.83 2.95 44.46 0.13 2.96 16 22 H 0.04 1.01 5.55 -2.38 -0.01 1.00 16 23 N -0.83 -19.36 5.18 -170.59 -0.88 -20.24 16 24 H 0.02 1.16 6.75 -2.39 -0.02 1.14 16 25 H 0.02 0.91 6.50 -2.38 -0.02 0.90 16 26 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.01 0.30 6.97 -2.39 -0.02 0.28 16 29 H 0.06 2.54 5.92 -2.39 -0.01 2.52 16 30 H 0.07 2.32 6.20 -2.38 -0.01 2.31 16 31 H 0.09 3.06 5.47 -2.39 -0.01 3.05 16 32 H 0.02 1.10 5.44 -2.38 -0.01 1.09 16 33 H 0.03 0.97 7.47 -2.38 -0.02 0.95 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 2.59 5.57 -2.39 -0.01 2.58 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.03 0.97 6.63 -2.39 -0.02 0.95 16 39 H 0.08 1.50 8.01 -2.38 -0.02 1.48 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.34 6.17 8.93 -89.70 -0.80 5.37 16 42 H 0.34 8.96 7.86 -89.69 -0.70 8.26 16 Total: -1.00 -59.21 291.92 0.19 -59.03 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.48 Total: 24.07 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 3.36 Total: -28.65 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.72 Total: -100.51 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -59.21 0.19 -59.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.994 kcal (2) G-P(sol) polarization free energy of solvation -59.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds