Wall clock time and date at job start Mon Mar 30 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46879 * 2 1 4 4 C 1.50698 * 109.47251 * 239.99715 * 2 1 3 5 5 H 1.07996 * 120.00351 * 239.99420 * 4 2 1 6 6 C 1.37880 * 119.99597 * 59.99930 * 4 2 1 7 7 N 1.31514 * 120.00236 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99962 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46934 * 90.00127 * 8 6 4 10 10 H 1.48496 * 109.47630 * 210.00112 * 8 6 4 11 11 H 1.48505 * 109.47289 * 330.00583 * 8 6 4 12 12 N 1.46898 * 109.46822 * 119.99730 * 2 1 3 13 13 C 1.46902 * 110.99543 * 176.04708 * 12 2 1 14 14 C 1.46897 * 111.00395 * 299.99700 * 12 2 1 15 15 C 1.53001 * 109.47161 * 169.99904 * 14 12 2 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 12 17 17 N 1.46901 * 109.46769 * 180.02562 * 16 15 14 18 18 C 1.48534 * 111.00172 * 52.60936 * 17 16 15 19 19 C 1.54933 * 103.22824 * 159.71827 * 18 17 16 20 20 C 1.54594 * 102.92252 * 322.58255 * 19 18 17 21 21 C 1.47912 * 110.99681 * 170.00135 * 17 16 15 22 22 H 1.08997 * 109.46879 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47176 * 299.99928 * 1 2 3 24 24 H 1.08998 * 109.47166 * 60.00217 * 1 2 3 25 25 H 0.97007 * 119.99596 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47397 * 183.95261 * 13 12 2 27 27 H 1.09001 * 109.47499 * 303.95571 * 13 12 2 28 28 H 1.09007 * 109.47114 * 63.95399 * 13 12 2 29 29 H 1.09001 * 109.46391 * 50.00344 * 14 12 2 30 30 H 1.09002 * 109.47472 * 290.00615 * 14 12 2 31 31 H 1.09001 * 109.46652 * 60.00605 * 15 14 12 32 32 H 1.08992 * 109.47514 * 300.00694 * 15 14 12 33 33 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 34 34 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 35 35 H 1.08997 * 110.66294 * 278.15766 * 18 17 16 36 36 H 1.09001 * 110.66815 * 41.27720 * 18 17 16 37 37 H 1.09002 * 110.72385 * 204.22928 * 19 18 17 38 38 H 1.09000 * 110.72461 * 80.94436 * 19 18 17 39 39 H 1.08997 * 110.31096 * 263.04565 * 20 19 18 40 40 H 1.08997 * 110.39127 * 140.91905 * 20 19 18 41 41 H 1.08997 * 109.91505 * 333.51116 * 21 17 16 42 42 H 1.08999 * 109.91449 * 94.60846 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8626 -0.9043 3.6342 16 6 1.3715 -0.2107 4.9064 17 7 1.6735 -1.0534 6.0712 18 6 3.1083 -1.4372 6.0929 19 6 3.3477 -1.8306 7.5722 20 6 2.4857 -0.8068 8.3460 21 6 1.4334 -0.3196 7.3328 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7087 1.1611 -3.4845 26 1 3.8164 -1.3720 2.0500 27 1 3.8070 -1.2914 0.2719 28 1 3.9192 0.2045 1.2300 29 1 0.4722 0.1324 2.3563 30 1 2.0519 0.9347 2.5280 31 1 2.9391 -1.0630 3.6988 32 1 1.3595 -1.8652 3.5272 33 1 1.8744 0.7505 5.0135 34 1 0.2951 -0.0523 4.8415 35 1 3.2891 -2.2870 5.4346 36 1 3.7369 -0.5919 5.8129 37 1 4.4005 -1.7244 7.8340 38 1 3.0026 -2.8470 7.7617 39 1 3.1008 0.0275 8.6832 40 1 1.9994 -1.2853 9.1960 41 1 1.5461 0.7517 7.1664 42 1 0.4306 -0.5344 7.7021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:16 Heat of formation + Delta-G solvation = 2.984595 kcal Electronic energy + Delta-G solvation = -17685.204195 eV Core-core repulsion = 15085.945454 eV Total energy + Delta-G solvation = -2599.258742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.07927 -37.14167 -33.86807 -32.47224 -30.02589 -29.01074 -28.76741 -26.01806 -24.41761 -23.47542 -21.65218 -20.90041 -20.09482 -19.21198 -16.28355 -16.17670 -15.88934 -15.27677 -14.83182 -14.15391 -13.86363 -13.74848 -13.39340 -12.91186 -12.72281 -12.42188 -12.15310 -11.77010 -11.54331 -11.35730 -11.14588 -11.10662 -11.03529 -10.94733 -10.73933 -10.68032 -10.56569 -10.11721 -10.04620 -9.98324 -9.64565 -8.82472 -8.44305 -8.39025 -7.11512 -5.98617 -4.02915 3.32532 3.38651 3.41839 3.94385 4.42556 4.51688 4.57700 4.79842 5.03422 5.16160 5.25157 5.32403 5.36588 5.48893 5.56173 5.62410 5.67720 5.69725 5.84932 5.86366 5.92541 6.02474 6.03488 6.16894 6.25716 6.40443 6.57439 6.66248 6.82636 6.86698 6.90993 7.04858 7.10074 7.20631 7.56722 7.77864 7.85942 8.25729 8.36682 8.65506 9.03878 9.61960 11.08283 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.055983 B = 0.004131 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.030005 B = 6777.060177 C = 7118.275521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.211 3.789 3 H -0.004 1.004 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.537 5.537 13 C 0.037 3.963 14 C 0.053 3.947 15 C -0.113 4.113 16 C 0.049 3.951 17 N -0.517 5.517 18 C 0.034 3.966 19 C -0.125 4.125 20 C -0.131 4.131 21 C 0.034 3.966 22 H 0.034 0.966 23 H 0.008 0.992 24 H 0.084 0.916 25 H 0.260 0.740 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.007 0.993 29 H 0.074 0.926 30 H 0.016 0.984 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 -1.840 17.955 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.105 3.895 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.261 5.261 13 C -0.112 4.112 14 C -0.076 4.076 15 C -0.151 4.151 16 C -0.080 4.080 17 N -0.242 5.242 18 C -0.094 4.094 19 C -0.163 4.163 20 C -0.169 4.169 21 C -0.094 4.094 22 H 0.053 0.947 23 H 0.027 0.973 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.026 0.974 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.427 -2.640 17.743 18.102 hybrid contribution 1.084 1.272 -0.852 1.876 sum 3.511 -1.367 16.891 17.306 Atomic orbital electron populations 1.21849 0.97759 0.99664 0.99810 1.19240 0.92336 0.91916 0.86009 0.98624 1.21176 1.30927 1.12215 0.89807 0.91847 1.24941 0.95261 0.95086 0.99025 1.69900 1.37040 1.23081 1.23342 0.86520 0.79220 0.79287 0.82494 1.20651 1.21376 1.19951 1.62101 1.09092 1.52721 1.02212 1.22238 0.89041 0.98548 1.01381 1.22064 1.00842 0.94212 0.90531 1.21647 1.00946 1.00240 0.92247 1.22321 1.01326 0.93983 0.90364 1.64812 1.19211 1.38515 1.01625 1.23241 0.88937 1.00377 0.96849 1.22494 0.99419 0.99642 0.94746 1.22392 0.97309 0.98927 0.98290 1.22877 0.99762 0.96335 0.90468 0.94654 0.97284 0.89723 0.93033 0.93835 0.90563 0.97436 0.90797 0.96614 0.92270 0.90578 0.95077 0.90597 0.89705 0.93823 0.91261 0.90766 0.91755 0.91157 0.93946 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.76 37.16 0.33 -2.99 16 2 C 0.21 5.47 2.06 -68.86 -0.14 5.32 16 3 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 4 C -0.50 -13.98 7.88 -34.44 -0.27 -14.26 16 5 H 0.06 1.76 6.40 -52.49 -0.34 1.42 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.82 11.32 55.43 0.63 -25.19 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.54 -11.89 4.62 -236.28 -1.09 -12.98 16 13 C 0.04 0.74 9.04 60.07 0.54 1.28 16 14 C 0.05 0.98 4.77 -3.83 -0.02 0.97 16 15 C -0.11 -1.74 4.80 -26.73 -0.13 -1.87 16 16 C 0.05 0.65 5.03 -3.82 -0.02 0.63 16 17 N -0.52 -6.44 5.40 -230.44 -1.24 -7.68 16 18 C 0.03 0.38 5.10 -1.90 -0.01 0.37 16 19 C -0.12 -1.13 7.06 -24.87 -0.18 -1.31 16 20 C -0.13 -1.13 6.93 -25.37 -0.18 -1.30 16 21 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 22 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 24 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.04 0.76 6.47 -51.93 -0.34 0.42 16 27 H 0.08 1.65 6.10 -51.93 -0.32 1.33 16 28 H 0.01 0.15 8.14 -51.92 -0.42 -0.28 16 29 H 0.07 1.41 5.83 -51.93 -0.30 1.10 16 30 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.06 0.90 5.20 -51.93 -0.27 0.62 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.03 0.41 7.81 -51.93 -0.41 0.01 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.99 7.66 -51.93 -0.40 0.59 16 36 H 0.04 0.50 8.00 -51.93 -0.42 0.08 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -28.87 316.80 -9.73 -38.61 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.59 Total: -2.73 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.18 Total: -11.31 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -1.71 Total: -45.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.87 -9.73 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.594 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds