Wall clock time and date at job start Mon Mar 30 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46879 * 2 1 4 4 C 1.50698 * 109.47251 * 239.99715 * 2 1 3 5 5 H 1.07996 * 120.00351 * 239.99420 * 4 2 1 6 6 C 1.37880 * 119.99597 * 59.99930 * 4 2 1 7 7 N 1.31514 * 120.00236 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99962 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46934 * 90.00127 * 8 6 4 10 10 H 1.48496 * 109.47630 * 210.00112 * 8 6 4 11 11 H 1.48505 * 109.47289 * 330.00583 * 8 6 4 12 12 N 1.46898 * 109.46822 * 119.99730 * 2 1 3 13 13 C 1.46902 * 110.99543 * 176.04708 * 12 2 1 14 14 C 1.46897 * 111.00395 * 299.99700 * 12 2 1 15 15 C 1.53001 * 109.47161 * 169.99904 * 14 12 2 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 12 17 17 N 1.46901 * 109.46769 * 180.02562 * 16 15 14 18 18 C 1.48534 * 111.00172 * 52.60936 * 17 16 15 19 19 C 1.54933 * 103.22824 * 159.71827 * 18 17 16 20 20 C 1.54594 * 102.92252 * 322.58255 * 19 18 17 21 21 C 1.47912 * 110.99681 * 170.00135 * 17 16 15 22 22 H 1.08997 * 109.46879 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47176 * 299.99928 * 1 2 3 24 24 H 1.08998 * 109.47166 * 60.00217 * 1 2 3 25 25 H 0.97007 * 119.99596 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47397 * 183.95261 * 13 12 2 27 27 H 1.09001 * 109.47499 * 303.95571 * 13 12 2 28 28 H 1.09007 * 109.47114 * 63.95399 * 13 12 2 29 29 H 1.09001 * 109.46391 * 50.00344 * 14 12 2 30 30 H 1.09002 * 109.47472 * 290.00615 * 14 12 2 31 31 H 1.09001 * 109.46652 * 60.00605 * 15 14 12 32 32 H 1.08992 * 109.47514 * 300.00694 * 15 14 12 33 33 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 34 34 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 35 35 H 1.08997 * 110.66294 * 278.15766 * 18 17 16 36 36 H 1.09001 * 110.66815 * 41.27720 * 18 17 16 37 37 H 1.09002 * 110.72385 * 204.22928 * 19 18 17 38 38 H 1.09000 * 110.72461 * 80.94436 * 19 18 17 39 39 H 1.08997 * 110.31096 * 263.04565 * 20 19 18 40 40 H 1.08997 * 110.39127 * 140.91905 * 20 19 18 41 41 H 1.08997 * 109.91505 * 333.51116 * 21 17 16 42 42 H 1.08999 * 109.91449 * 94.60846 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8626 -0.9043 3.6342 16 6 1.3715 -0.2107 4.9064 17 7 1.6735 -1.0534 6.0712 18 6 3.1083 -1.4372 6.0929 19 6 3.3477 -1.8306 7.5722 20 6 2.4857 -0.8068 8.3460 21 6 1.4334 -0.3196 7.3328 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7087 1.1611 -3.4845 26 1 3.8164 -1.3720 2.0500 27 1 3.8070 -1.2914 0.2719 28 1 3.9192 0.2045 1.2300 29 1 0.4722 0.1324 2.3563 30 1 2.0519 0.9347 2.5280 31 1 2.9391 -1.0630 3.6988 32 1 1.3595 -1.8652 3.5272 33 1 1.8744 0.7505 5.0135 34 1 0.2951 -0.0523 4.8415 35 1 3.2891 -2.2870 5.4346 36 1 3.7369 -0.5919 5.8129 37 1 4.4005 -1.7244 7.8340 38 1 3.0026 -2.8470 7.7617 39 1 3.1008 0.0275 8.6832 40 1 1.9994 -1.2853 9.1960 41 1 1.5461 0.7517 7.1664 42 1 0.4306 -0.5344 7.7021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:16 Heat of formation + Delta-G solvation = -15.807773 kcal Electronic energy + Delta-G solvation = -17686.019094 eV Core-core repulsion = 15085.945454 eV Total energy + Delta-G solvation = -2600.073640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02219 -38.82142 -35.41277 -34.08534 -31.51420 -30.52294 -29.74401 -27.75537 -26.21998 -24.89656 -22.93986 -21.73460 -21.28893 -20.92712 -18.35844 -17.28572 -16.90494 -16.76373 -16.31081 -15.64207 -15.34657 -15.15476 -14.83901 -14.27590 -13.99859 -13.75426 -13.47141 -13.31646 -12.95904 -12.84922 -12.61211 -12.42035 -12.33139 -12.22771 -12.19505 -12.02138 -11.96159 -11.90990 -11.73276 -11.41914 -11.22790 -10.86118 -10.50755 -9.37393 -8.93848 -8.11574 -6.23583 1.42461 1.43515 1.53604 2.42270 2.98131 3.16613 3.42214 3.76260 3.82672 4.02036 4.10213 4.31114 4.34706 4.39760 4.48967 4.58082 4.64259 4.70189 4.70882 4.74654 4.78787 4.93057 4.94341 4.99506 5.02501 5.07612 5.08427 5.17502 5.22248 5.30818 5.32487 5.36081 5.51364 5.72714 5.79273 5.97973 6.08503 6.25677 6.39873 6.75199 6.91356 7.45674 8.94671 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.055983 B = 0.004131 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.030005 B = 6777.060177 C = 7118.275521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.214 3.786 3 H -0.040 1.040 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.545 5.545 13 C 0.040 3.960 14 C 0.055 3.945 15 C -0.096 4.096 16 C 0.056 3.944 17 N -0.531 5.531 18 C 0.028 3.972 19 C -0.121 4.121 20 C -0.127 4.127 21 C 0.030 3.970 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.060 0.940 25 H 0.262 0.738 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.003 0.997 29 H 0.068 0.932 30 H 0.014 0.986 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -2.629 19.252 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 H -0.023 1.023 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.269 5.269 13 C -0.108 4.108 14 C -0.074 4.074 15 C -0.134 4.134 16 C -0.073 4.073 17 N -0.255 5.255 18 C -0.099 4.099 19 C -0.159 4.159 20 C -0.165 4.165 21 C -0.098 4.098 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.022 0.978 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.099 -3.435 19.066 19.620 hybrid contribution 0.874 1.537 -1.198 2.136 sum 3.973 -1.899 17.868 18.403 Atomic orbital electron populations 1.21668 0.97298 0.99253 0.99709 1.19061 0.92719 0.90076 0.87437 1.02274 1.21455 1.31161 1.12317 0.90958 0.92129 1.25747 0.95374 0.95765 1.02002 1.70029 1.37832 1.24247 1.24058 0.85496 0.78893 0.78188 0.78688 1.20112 1.20944 1.19192 1.62063 1.10243 1.52460 1.02136 1.22222 0.87936 0.98643 1.01981 1.22107 1.00329 0.94647 0.90308 1.21458 1.01161 0.99083 0.91734 1.22171 1.01214 0.93934 0.89948 1.64801 1.20105 1.38672 1.01957 1.23294 0.88234 0.99996 0.98390 1.22493 1.00507 0.99760 0.93134 1.22399 0.96869 0.99201 0.98049 1.22963 1.00667 0.96239 0.89952 0.95005 0.95054 0.92146 0.92933 0.90610 0.92252 0.97807 0.91323 0.96822 0.91747 0.91555 0.94877 0.90662 0.90404 0.94096 0.89747 0.90712 0.90731 0.89918 0.93912 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 8.76 71.98 0.63 -5.50 16 2 C 0.21 11.28 2.06 44.17 0.09 11.37 16 3 H -0.04 -2.37 8.14 -2.39 -0.02 -2.39 16 4 C -0.52 -29.27 7.88 25.60 0.20 -29.07 16 5 H 0.06 3.37 6.40 -2.91 -0.02 3.35 16 6 C 0.01 0.54 5.30 84.66 0.45 0.98 16 7 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 N -0.54 -24.06 4.62 -901.46 -4.17 -28.23 16 13 C 0.04 1.62 9.04 127.69 1.15 2.77 16 14 C 0.05 2.02 4.77 86.30 0.41 2.43 16 15 C -0.10 -2.85 4.80 30.59 0.15 -2.71 16 16 C 0.06 1.42 5.03 86.30 0.43 1.86 16 17 N -0.53 -12.31 5.40 -882.99 -4.77 -17.08 16 18 C 0.03 0.59 5.10 86.65 0.44 1.03 16 19 C -0.12 -1.89 7.06 31.80 0.22 -1.67 16 20 C -0.13 -1.85 6.93 31.47 0.22 -1.63 16 21 C 0.03 0.55 6.70 86.44 0.58 1.13 16 22 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.03 1.39 6.20 -2.39 -0.01 1.38 16 24 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 25 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 26 H 0.08 2.51 6.47 -2.39 -0.02 2.50 16 27 H 0.06 2.56 6.10 -2.39 -0.01 2.55 16 28 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 29 H 0.07 2.58 5.83 -2.39 -0.01 2.56 16 30 H 0.01 0.51 8.12 -2.39 -0.02 0.49 16 31 H 0.06 1.84 5.20 -2.39 -0.01 1.82 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.03 0.83 7.81 -2.39 -0.02 0.81 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.69 7.66 -2.39 -0.02 1.67 16 36 H 0.04 0.86 8.00 -2.39 -0.02 0.84 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 0.79 7.57 -2.39 -0.02 0.77 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -61.36 316.80 -0.72 -62.08 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.96 Total: 9.74 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 4.98 Total: -19.00 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -8.69 Total: -99.03 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -61.36 -0.72 -62.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.271 kcal (2) G-P(sol) polarization free energy of solvation -61.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds