Wall clock time and date at job start Mon Mar 30 2020 03:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47587 * 2 1 4 4 N 1.46901 * 109.46896 * 239.99237 * 2 1 3 5 5 C 1.52998 * 109.46990 * 120.00099 * 2 1 3 6 6 H 1.09005 * 109.46540 * 183.27354 * 5 2 1 7 7 C 1.53033 * 109.46740 * 63.28884 * 5 2 1 8 8 C 1.53122 * 109.28434 * 180.81792 * 7 5 2 9 9 C 1.53118 * 109.15861 * 57.64974 * 8 7 5 10 10 C 1.53034 * 109.28219 * 302.34969 * 9 8 7 11 11 N 1.46849 * 109.45338 * 303.24893 * 5 2 1 12 12 C 1.46894 * 110.99382 * 305.85979 * 11 5 2 13 13 C 1.52997 * 109.46967 * 301.92079 * 12 11 5 14 14 C 1.52999 * 109.47243 * 181.36675 * 13 12 11 15 15 C 1.50697 * 109.47297 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00047 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00435 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99370 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00411 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46880 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46993 * 119.99709 * 19 17 15 22 22 H 1.48489 * 109.47048 * 240.00230 * 19 17 15 23 23 H 1.09005 * 109.46893 * 300.00621 * 1 2 3 24 24 H 1.09001 * 109.46495 * 59.99952 * 1 2 3 25 25 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.00906 * 111.00048 * 181.47549 * 4 2 1 27 27 H 1.00897 * 111.00261 * 305.43515 * 4 2 1 28 28 H 1.08998 * 109.50560 * 60.87508 * 7 5 2 29 29 H 1.09003 * 109.50476 * 300.75607 * 7 5 2 30 30 H 1.08997 * 109.52030 * 297.75020 * 8 7 5 31 31 H 1.08996 * 109.52787 * 177.55665 * 8 7 5 32 32 H 1.09000 * 109.50144 * 182.40570 * 9 8 7 33 33 H 1.09002 * 109.50298 * 62.29256 * 9 8 7 34 34 H 1.08999 * 109.46383 * 179.19193 * 10 9 8 35 35 H 1.08994 * 109.46099 * 299.17531 * 10 9 8 36 36 H 1.09000 * 109.47344 * 61.91969 * 12 11 5 37 37 H 1.08998 * 109.47366 * 181.92463 * 12 11 5 38 38 H 1.09000 * 109.47442 * 301.37165 * 13 12 11 39 39 H 1.09000 * 109.47323 * 61.37037 * 13 12 11 40 40 H 1.08994 * 109.47524 * 300.00209 * 14 13 12 41 41 H 1.09007 * 109.47012 * 60.00505 * 14 13 12 42 42 H 0.97002 * 119.99313 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6927 -1.1994 5 6 2.0400 -0.7213 1.2492 6 1 3.1285 -0.6707 1.2790 7 6 1.5985 -2.1860 1.2084 8 6 2.0935 -2.8987 2.4700 9 6 1.5431 -2.1773 3.7034 10 6 1.9862 -0.7129 3.6720 11 7 1.4872 -0.0755 2.4467 12 6 1.7747 1.3650 2.4479 13 6 3.2875 1.5832 2.3794 14 6 3.5887 3.0828 2.4151 15 6 5.0787 3.2977 2.3482 16 1 5.7444 2.4495 2.2860 17 6 5.5924 4.5772 2.3664 18 7 4.7818 5.6100 2.4426 19 14 7.4394 4.8435 2.2828 20 1 8.1259 3.5292 2.2025 21 1 7.7694 5.6481 1.0791 22 1 7.8910 5.5649 3.4996 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.0280 -0.7272 -1.2107 27 1 1.6253 -1.6188 -1.2684 28 1 2.0216 -2.6692 0.3278 29 1 0.5106 -2.2371 1.1648 30 1 3.1831 -2.8817 2.4941 31 1 1.7444 -3.9312 2.4659 32 1 1.9267 -2.6543 4.6053 33 1 0.4543 -2.2282 3.6991 34 1 1.5840 -0.1930 4.5414 35 1 3.0749 -0.6624 3.6901 36 1 1.3009 1.8309 1.5839 37 1 1.3842 1.8127 3.3618 38 1 3.7638 1.0966 3.2306 39 1 3.6745 1.1569 1.4539 40 1 3.1125 3.5694 1.5639 41 1 3.2017 3.5092 3.3406 42 1 5.1431 6.5101 2.4558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063194492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:33 Heat of formation + Delta-G solvation = -23.249789 kcal Electronic energy + Delta-G solvation = -18432.911110 eV Core-core repulsion = 15832.514760 eV Total energy + Delta-G solvation = -2600.396350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82881 -35.42659 -34.80343 -32.94445 -30.59968 -29.98610 -28.38869 -26.57093 -24.37168 -23.79453 -21.95502 -20.76051 -20.38804 -18.38623 -16.40014 -16.03489 -15.55966 -15.36814 -14.77081 -14.46488 -14.22258 -13.93149 -13.52420 -13.09033 -12.98618 -12.42647 -12.18578 -12.04781 -11.65815 -11.52986 -11.44385 -11.17050 -10.91976 -10.84658 -10.70971 -10.66873 -10.48551 -10.35204 -10.07152 -9.60551 -9.43262 -9.16289 -8.57832 -8.35504 -7.82630 -6.00196 -4.02719 3.29856 3.37307 3.41151 4.14997 4.45398 4.67033 4.77676 4.86317 4.97933 5.12436 5.29734 5.35347 5.41875 5.51666 5.66089 5.66229 5.69846 5.81944 5.83592 5.89240 5.94943 6.04809 6.06341 6.17268 6.18042 6.28186 6.35324 6.43115 6.48562 6.61345 6.80798 7.05330 7.18899 7.43475 7.46072 7.54256 7.66458 7.81315 7.99405 8.42756 9.04288 9.61430 11.10876 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.005775 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.387210 B = 4847.239366 C = 5153.141994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.089 0.911 4 N -0.841 5.841 5 C 0.052 3.948 6 H 0.044 0.956 7 C -0.115 4.115 8 C -0.120 4.120 9 C -0.115 4.115 10 C 0.052 3.948 11 N -0.526 5.526 12 C 0.047 3.953 13 C -0.143 4.143 14 C 0.025 3.975 15 C -0.519 4.519 16 H 0.052 0.948 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.284 1.284 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.340 0.660 27 H 0.334 0.666 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -15.810 -1.312 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 H 0.107 0.893 4 N -0.370 5.370 5 C -0.059 4.059 6 H 0.062 0.938 7 C -0.153 4.153 8 C -0.157 4.157 9 C -0.152 4.152 10 C -0.077 4.077 11 N -0.250 5.250 12 C -0.080 4.080 13 C -0.181 4.181 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.070 0.930 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.724 -15.093 -1.736 17.520 hybrid contribution 2.501 -0.291 0.752 2.628 sum -6.224 -15.385 -0.983 16.625 Atomic orbital electron populations 1.21736 0.94066 1.01466 1.01989 1.21572 0.96217 0.98467 0.86102 0.89315 1.59069 1.13057 1.24230 1.40669 1.22435 0.97294 0.94007 0.92141 0.93837 1.21689 1.01800 0.94604 0.97190 1.21552 1.00335 0.98649 0.95204 1.21571 1.01283 0.95064 0.97328 1.22072 0.98100 0.94355 0.93142 1.62253 1.58262 1.03505 1.00980 1.22397 0.96565 0.86586 1.02423 1.22202 0.94459 1.01450 1.00030 1.19015 0.96342 0.88756 0.97137 1.21279 0.92382 0.91923 1.50202 0.92970 1.25022 0.97792 0.96249 0.95362 1.69974 1.34305 0.98286 1.50830 0.86571 0.85857 0.78151 0.77645 1.19861 1.20945 1.20988 0.90940 0.92958 0.93276 0.84803 0.85320 0.92431 0.90870 0.92489 0.92256 0.92029 0.91424 0.90924 0.94493 0.90638 0.91190 0.93588 0.93465 0.96593 0.96690 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.81 37.16 0.33 -1.37 16 2 C 0.09 1.19 2.65 -67.71 -0.18 1.01 16 3 H 0.09 1.46 6.18 -51.93 -0.32 1.14 16 4 N -0.84 -10.16 9.07 -4.67 -0.04 -10.20 16 5 C 0.05 0.70 1.22 -67.72 -0.08 0.61 16 6 H 0.04 0.68 6.64 -51.93 -0.34 0.33 16 7 C -0.11 -1.27 4.67 -26.65 -0.12 -1.39 16 8 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 9 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 10 C 0.05 0.71 5.05 -3.83 -0.02 0.69 16 11 N -0.53 -7.59 3.86 -226.70 -0.87 -8.46 16 12 C 0.05 0.81 4.55 -3.83 -0.02 0.79 16 13 C -0.14 -2.93 4.34 -26.73 -0.12 -3.04 16 14 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 15 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.07 0.96 6.89 -51.93 -0.36 0.61 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.56 6.49 -51.93 -0.34 0.22 16 26 H 0.34 3.99 9.02 -39.29 -0.35 3.63 16 27 H 0.33 3.42 7.32 -39.29 -0.29 3.13 16 28 H 0.06 0.56 6.81 -51.93 -0.35 0.21 16 29 H 0.07 0.81 6.48 -51.93 -0.34 0.48 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.04 0.56 6.73 -51.93 -0.35 0.21 16 36 H 0.08 1.30 5.87 -51.93 -0.30 1.00 16 37 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 38 H 0.05 0.96 6.62 -51.93 -0.34 0.61 16 39 H 0.05 0.98 6.23 -51.93 -0.32 0.65 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.41 8.14 -51.92 -0.42 -0.02 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -29.67 310.44 -8.96 -38.63 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.35 Total: 3.61 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.08 Total: -18.73 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.18 Total: -45.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.67 -8.96 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063194492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.379 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds