Wall clock time and date at job start Mon Mar 30 2020 03:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47587 * 2 1 4 4 N 1.46901 * 109.46896 * 239.99237 * 2 1 3 5 5 C 1.52998 * 109.46990 * 120.00099 * 2 1 3 6 6 H 1.09005 * 109.46540 * 183.27354 * 5 2 1 7 7 C 1.53033 * 109.46740 * 63.28884 * 5 2 1 8 8 C 1.53122 * 109.28434 * 180.81792 * 7 5 2 9 9 C 1.53118 * 109.15861 * 57.64974 * 8 7 5 10 10 C 1.53034 * 109.28219 * 302.34969 * 9 8 7 11 11 N 1.46849 * 109.45338 * 303.24893 * 5 2 1 12 12 C 1.46894 * 110.99382 * 305.85979 * 11 5 2 13 13 C 1.52997 * 109.46967 * 301.92079 * 12 11 5 14 14 C 1.52999 * 109.47243 * 181.36675 * 13 12 11 15 15 C 1.50697 * 109.47297 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00047 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00435 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99370 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00411 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46880 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46993 * 119.99709 * 19 17 15 22 22 H 1.48489 * 109.47048 * 240.00230 * 19 17 15 23 23 H 1.09005 * 109.46893 * 300.00621 * 1 2 3 24 24 H 1.09001 * 109.46495 * 59.99952 * 1 2 3 25 25 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.00906 * 111.00048 * 181.47549 * 4 2 1 27 27 H 1.00897 * 111.00261 * 305.43515 * 4 2 1 28 28 H 1.08998 * 109.50560 * 60.87508 * 7 5 2 29 29 H 1.09003 * 109.50476 * 300.75607 * 7 5 2 30 30 H 1.08997 * 109.52030 * 297.75020 * 8 7 5 31 31 H 1.08996 * 109.52787 * 177.55665 * 8 7 5 32 32 H 1.09000 * 109.50144 * 182.40570 * 9 8 7 33 33 H 1.09002 * 109.50298 * 62.29256 * 9 8 7 34 34 H 1.08999 * 109.46383 * 179.19193 * 10 9 8 35 35 H 1.08994 * 109.46099 * 299.17531 * 10 9 8 36 36 H 1.09000 * 109.47344 * 61.91969 * 12 11 5 37 37 H 1.08998 * 109.47366 * 181.92463 * 12 11 5 38 38 H 1.09000 * 109.47442 * 301.37165 * 13 12 11 39 39 H 1.09000 * 109.47323 * 61.37037 * 13 12 11 40 40 H 1.08994 * 109.47524 * 300.00209 * 14 13 12 41 41 H 1.09007 * 109.47012 * 60.00505 * 14 13 12 42 42 H 0.97002 * 119.99313 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6927 -1.1994 5 6 2.0400 -0.7213 1.2492 6 1 3.1285 -0.6707 1.2790 7 6 1.5985 -2.1860 1.2084 8 6 2.0935 -2.8987 2.4700 9 6 1.5431 -2.1773 3.7034 10 6 1.9862 -0.7129 3.6720 11 7 1.4872 -0.0755 2.4467 12 6 1.7747 1.3650 2.4479 13 6 3.2875 1.5832 2.3794 14 6 3.5887 3.0828 2.4151 15 6 5.0787 3.2977 2.3482 16 1 5.7444 2.4495 2.2860 17 6 5.5924 4.5772 2.3664 18 7 4.7818 5.6100 2.4426 19 14 7.4394 4.8435 2.2828 20 1 8.1259 3.5292 2.2025 21 1 7.7694 5.6481 1.0791 22 1 7.8910 5.5649 3.4996 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.0280 -0.7272 -1.2107 27 1 1.6253 -1.6188 -1.2684 28 1 2.0216 -2.6692 0.3278 29 1 0.5106 -2.2371 1.1648 30 1 3.1831 -2.8817 2.4941 31 1 1.7444 -3.9312 2.4659 32 1 1.9267 -2.6543 4.6053 33 1 0.4543 -2.2282 3.6991 34 1 1.5840 -0.1930 4.5414 35 1 3.0749 -0.6624 3.6901 36 1 1.3009 1.8309 1.5839 37 1 1.3842 1.8127 3.3618 38 1 3.7638 1.0966 3.2306 39 1 3.6745 1.1569 1.4539 40 1 3.1125 3.5694 1.5639 41 1 3.2017 3.5092 3.3406 42 1 5.1431 6.5101 2.4558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063194492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:32 Heat of formation + Delta-G solvation = -43.049758 kcal Electronic energy + Delta-G solvation = -18433.769701 eV Core-core repulsion = 15832.514760 eV Total energy + Delta-G solvation = -2601.254941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97228 -36.64801 -36.20208 -34.79356 -32.36361 -30.99009 -29.41708 -28.32082 -25.87418 -24.91988 -23.52047 -22.18958 -21.59427 -19.56411 -18.53431 -17.14142 -16.83089 -16.60022 -16.44706 -15.83917 -15.48876 -15.02614 -14.81727 -14.56409 -14.19115 -13.83906 -13.73001 -13.49532 -13.01572 -12.83475 -12.68777 -12.57143 -12.49523 -12.43655 -12.39448 -11.89944 -11.70099 -11.43807 -11.37895 -11.32435 -11.22424 -11.04020 -10.59936 -9.59374 -9.15423 -8.23630 -6.35994 1.35397 1.35859 1.48849 2.36603 2.96467 3.08311 3.69150 3.76569 3.91539 3.95439 4.08956 4.19354 4.31626 4.36116 4.38355 4.49387 4.59151 4.62451 4.75708 4.81620 4.84409 4.87801 5.00428 5.07695 5.10332 5.13138 5.16182 5.21505 5.25109 5.33831 5.44038 5.47334 5.51655 5.66485 5.79885 6.09954 6.14887 6.22610 6.32556 6.63318 6.80277 7.33393 8.87504 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.005775 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.387210 B = 4847.239366 C = 5153.141994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.092 3.908 3 H 0.053 0.947 4 N -0.841 5.841 5 C 0.054 3.946 6 H 0.020 0.980 7 C -0.109 4.109 8 C -0.119 4.119 9 C -0.108 4.108 10 C 0.046 3.954 11 N -0.516 5.516 12 C 0.059 3.941 13 C -0.122 4.122 14 C 0.030 3.970 15 C -0.544 4.544 16 H 0.052 0.948 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.964 3.036 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.275 1.275 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.341 0.659 27 H 0.348 0.652 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.018 0.982 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.043 0.957 40 H -0.009 1.009 41 H -0.009 1.009 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 -17.851 -1.511 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.020 4.020 3 H 0.071 0.929 4 N -0.372 5.372 5 C -0.056 4.056 6 H 0.038 0.962 7 C -0.147 4.147 8 C -0.157 4.157 9 C -0.146 4.146 10 C -0.082 4.082 11 N -0.240 5.240 12 C -0.069 4.069 13 C -0.161 4.161 14 C -0.007 4.007 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.788 3.212 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.201 1.201 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.154 0.846 27 H 0.163 0.837 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.589 -17.163 -1.937 19.289 hybrid contribution 2.441 0.357 0.806 2.596 sum -6.148 -16.806 -1.131 17.931 Atomic orbital electron populations 1.21662 0.92987 1.02455 1.01428 1.21416 0.96953 0.96853 0.86823 0.92867 1.59005 1.13321 1.25145 1.39719 1.22468 0.95848 0.95869 0.91446 0.96168 1.21672 1.02244 0.92393 0.98344 1.21571 0.99855 0.99787 0.94458 1.21546 1.01710 0.92880 0.98458 1.22186 0.96951 0.96428 0.92608 1.62316 1.57898 1.01763 1.01982 1.22174 0.93706 0.88864 1.02119 1.21948 0.97170 0.97390 0.99558 1.18900 0.95105 0.92027 0.94713 1.21679 0.93675 0.92346 1.50548 0.92926 1.25971 1.03209 0.95870 0.94641 1.70098 1.36732 0.98880 1.51391 0.85423 0.79333 0.78422 0.78033 1.18909 1.20109 1.20069 0.91879 0.93174 0.91412 0.84616 0.83747 0.90753 0.90158 0.93319 0.89877 0.90547 0.90717 0.91023 0.96379 0.90944 0.91489 0.93987 0.93808 0.99048 0.99040 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.81 71.98 0.63 -2.41 16 2 C 0.09 2.45 2.65 44.92 0.12 2.57 16 3 H 0.05 1.81 6.18 -2.39 -0.01 1.79 16 4 N -0.84 -19.33 9.07 -168.68 -1.53 -20.86 16 5 C 0.05 1.42 1.22 44.94 0.06 1.47 16 6 H 0.02 0.63 6.64 -2.38 -0.02 0.62 16 7 C -0.11 -2.11 4.67 30.65 0.14 -1.96 16 8 C -0.12 -2.19 6.00 30.67 0.18 -2.01 16 9 C -0.11 -2.15 6.09 30.65 0.19 -1.96 16 10 C 0.05 1.24 5.05 86.32 0.44 1.67 16 11 N -0.52 -14.68 3.86 -871.14 -3.36 -18.05 16 12 C 0.06 2.09 4.55 86.30 0.39 2.48 16 13 C -0.12 -5.19 4.34 30.59 0.13 -5.05 16 14 C 0.03 1.65 4.97 29.85 0.15 1.79 16 15 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 16 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 19 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H 0.06 1.62 6.89 -2.38 -0.02 1.61 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.36 6.49 -2.39 -0.02 1.34 16 26 H 0.34 7.75 9.02 -89.69 -0.81 6.94 16 27 H 0.35 6.31 7.32 -89.70 -0.66 5.65 16 28 H 0.07 1.22 6.81 -2.39 -0.02 1.20 16 29 H 0.08 1.49 6.48 -2.39 -0.02 1.48 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.90 8.06 -2.39 -0.02 1.89 16 35 H 0.02 0.55 6.73 -2.39 -0.02 0.53 16 36 H 0.07 2.60 5.87 -2.39 -0.01 2.58 16 37 H 0.07 2.38 8.06 -2.39 -0.02 2.36 16 38 H 0.04 1.80 6.62 -2.39 -0.02 1.79 16 39 H 0.04 1.88 6.23 -2.39 -0.01 1.86 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 42 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.55 310.44 0.08 -64.47 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.47 Total: 19.29 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.13 Total: -34.69 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -4.61 Total: -96.29 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.55 0.08 -64.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063194492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.423 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds