Wall clock time and date at job start Mon Mar 30 2020 03:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46895 * 109.47150 * 119.99942 * 2 1 3 5 5 C 1.52996 * 109.47117 * 240.00243 * 2 1 3 6 6 H 1.08994 * 109.46475 * 60.09335 * 5 2 1 7 7 C 1.53036 * 109.46189 * 300.11136 * 5 2 1 8 8 C 1.53117 * 109.27973 * 180.80543 * 7 5 2 9 9 C 1.53113 * 109.16032 * 57.65622 * 8 7 5 10 10 C 1.53035 * 109.27993 * 302.34432 * 9 8 7 11 11 N 1.46846 * 109.46430 * 180.02562 * 5 2 1 12 12 C 1.46900 * 110.99646 * 305.85480 * 11 5 2 13 13 C 1.53005 * 109.47083 * 184.04679 * 12 11 5 14 14 C 1.52999 * 109.47089 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47166 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99812 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00123 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99836 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00284 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46924 * 89.99579 * 19 17 15 21 21 H 1.48497 * 109.47080 * 210.00200 * 19 17 15 22 22 H 1.48503 * 109.46840 * 330.00031 * 19 17 15 23 23 H 1.09000 * 109.47144 * 305.77386 * 1 2 3 24 24 H 1.08997 * 109.47323 * 65.77947 * 1 2 3 25 25 H 1.09003 * 109.47079 * 185.78336 * 1 2 3 26 26 H 1.00897 * 111.00362 * 300.00101 * 4 2 1 27 27 H 1.00906 * 111.00251 * 63.95900 * 4 2 1 28 28 H 1.09007 * 109.50321 * 60.86405 * 7 5 2 29 29 H 1.09005 * 109.54147 * 300.76975 * 7 5 2 30 30 H 1.09002 * 109.52597 * 297.74729 * 8 7 5 31 31 H 1.09005 * 109.57538 * 177.58996 * 8 7 5 32 32 H 1.09002 * 109.50313 * 62.28802 * 9 8 7 33 33 H 1.09000 * 109.50711 * 182.40580 * 9 8 7 34 34 H 1.09004 * 109.46405 * 179.19068 * 10 9 8 35 35 H 1.08997 * 109.46429 * 299.16279 * 10 9 8 36 36 H 1.08999 * 109.47278 * 304.04103 * 12 11 5 37 37 H 1.09002 * 109.47647 * 64.04957 * 12 11 5 38 38 H 1.09003 * 109.47064 * 299.99735 * 13 12 11 39 39 H 1.08994 * 109.47243 * 59.99537 * 13 12 11 40 40 H 1.09003 * 109.46815 * 299.99721 * 14 13 12 41 41 H 1.09003 * 109.47507 * 59.99722 * 14 13 12 42 42 H 0.97007 * 119.99746 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2492 6 1 1.6780 -0.2063 -2.1391 7 6 1.5275 -2.1632 -1.2505 8 6 2.0566 -2.8867 -2.4918 9 6 3.5868 -2.8315 -2.4915 10 6 4.0397 -1.3702 -2.4544 11 7 3.5084 -0.7216 -1.2488 12 6 4.0352 0.6425 -1.1085 13 6 5.5613 0.6132 -1.2133 14 6 6.1100 2.0339 -1.0665 15 6 7.6132 2.0049 -1.1691 16 1 8.1260 1.0669 -1.3232 17 6 8.3339 3.1758 -1.0663 18 7 9.6457 3.1506 -1.1564 19 14 7.4471 4.7981 -0.7991 20 1 7.3037 5.0498 0.6573 21 1 8.2304 5.8980 -1.4170 22 1 6.1020 4.7359 -1.4255 23 1 -0.3633 0.6008 0.8338 24 1 -0.3634 0.4216 -0.9372 25 1 -0.3633 -1.0225 0.1036 26 1 1.6962 -0.2350 2.0385 27 1 1.7503 -1.6649 1.1909 28 1 0.4375 -2.1620 -1.2669 29 1 1.8772 -2.6752 -0.3540 30 1 1.6747 -2.3987 -3.3885 31 1 1.7297 -3.9265 -2.4757 32 1 3.9696 -3.3536 -1.6146 33 1 3.9683 -3.3078 -3.3947 34 1 5.1288 -1.3278 -2.4396 35 1 3.6682 -0.8522 -3.3385 36 1 3.6287 1.2721 -1.8999 37 1 3.7454 1.0460 -0.1382 38 1 5.9679 -0.0165 -0.4218 39 1 5.8512 0.2097 -2.1834 40 1 5.7035 2.6638 -1.8577 41 1 5.8201 2.4369 -0.0961 42 1 10.1527 3.9744 -1.0844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063194493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:34 Heat of formation + Delta-G solvation = -38.329576 kcal Electronic energy + Delta-G solvation = -18164.135342 eV Core-core repulsion = 15563.085083 eV Total energy + Delta-G solvation = -2601.050259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66151 -36.84686 -36.07330 -34.69594 -32.71539 -31.11831 -29.30427 -28.65734 -25.56947 -25.03779 -23.27087 -21.59575 -21.30652 -20.11377 -18.87246 -17.38638 -16.72340 -16.27403 -16.10252 -15.87414 -15.47764 -14.89344 -14.74647 -14.48059 -14.11625 -14.00408 -13.73006 -13.70470 -13.43062 -13.24501 -12.73892 -12.64499 -12.46211 -12.12228 -11.98586 -11.77059 -11.60416 -11.56029 -11.45839 -11.32915 -10.91807 -10.85912 -10.74799 -9.34146 -9.04514 -8.29375 -6.33413 1.34980 1.36986 1.49306 2.36349 2.98079 3.05682 3.74214 3.83675 3.89092 4.01477 4.20258 4.22204 4.29775 4.39820 4.41214 4.43282 4.56625 4.67951 4.70764 4.77768 4.82691 4.93177 4.98648 5.02810 5.06003 5.07273 5.13054 5.18365 5.22993 5.33789 5.36651 5.50173 5.54400 5.62660 5.66599 6.23946 6.32332 6.33643 6.53556 6.74321 6.80004 7.31014 8.87791 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028927 B = 0.005584 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.711586 B = 5013.419816 C = 5670.386550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 H 0.063 0.937 4 N -0.838 5.838 5 C 0.090 3.910 6 H 0.031 0.969 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.111 4.111 10 C 0.044 3.956 11 N -0.519 5.519 12 C 0.071 3.929 13 C -0.089 4.089 14 C -0.007 4.007 15 C -0.532 4.532 16 H 0.028 0.972 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.248 1.248 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.342 0.658 27 H 0.344 0.656 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.022 0.978 36 H 0.018 0.982 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.117 -9.819 0.318 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.081 0.919 4 N -0.369 5.369 5 C -0.018 4.018 6 H 0.049 0.951 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.149 4.149 10 C -0.084 4.084 11 N -0.244 5.244 12 C -0.056 4.056 13 C -0.127 4.127 14 C -0.045 4.045 15 C -0.570 4.570 16 H 0.047 0.953 17 C -0.194 4.194 18 N -0.594 5.594 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.172 1.172 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.159 0.841 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.082 -9.817 0.455 24.171 hybrid contribution -0.634 1.189 -0.494 1.435 sum -22.716 -8.628 -0.039 24.300 Atomic orbital electron populations 1.22600 0.95896 1.02780 1.02568 1.21421 0.92793 0.97360 0.90487 0.91931 1.58660 1.68062 1.06794 1.03404 1.21746 0.86975 0.97226 0.95897 0.95147 1.21648 1.00270 0.93618 0.98987 1.21565 0.94782 1.01207 0.97878 1.21549 0.96667 0.94512 1.02162 1.22232 0.99919 0.95846 0.90387 1.61855 1.07246 1.17572 1.37699 1.22003 0.94196 0.89111 1.00321 1.21355 0.94143 0.96958 1.00229 1.19470 0.93818 0.95059 0.96190 1.21493 0.92352 0.93998 1.49169 0.95312 1.26048 0.95475 1.03572 0.94269 1.70080 1.07565 1.29216 1.52489 0.85612 0.79480 0.77966 0.79302 1.18989 1.20743 1.17176 0.91997 0.92159 0.91219 0.84509 0.84131 0.89952 0.90941 0.92414 0.90220 0.91764 0.90891 0.91868 0.96015 0.96365 0.90457 0.93570 0.93527 0.96565 0.96453 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.95 71.98 0.64 -1.99 16 2 C 0.09 1.89 2.64 44.91 0.12 2.01 16 3 H 0.06 1.55 6.42 -2.39 -0.02 1.53 16 4 N -0.84 -17.17 9.06 -168.69 -1.53 -18.70 16 5 C 0.09 2.06 1.73 44.94 0.08 2.14 16 6 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 7 C -0.11 -1.90 4.69 30.65 0.14 -1.76 16 8 C -0.12 -2.06 6.00 30.67 0.18 -1.88 16 9 C -0.11 -2.46 6.09 30.64 0.19 -2.28 16 10 C 0.04 1.26 5.03 86.33 0.43 1.70 16 11 N -0.52 -15.26 4.43 -871.13 -3.86 -19.12 16 12 C 0.07 2.47 4.44 86.30 0.38 2.85 16 13 C -0.09 -3.81 4.65 30.60 0.14 -3.66 16 14 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 15 C -0.53 -32.35 9.66 25.60 0.25 -32.10 16 16 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 17 C 0.00 0.17 5.47 84.65 0.46 0.63 16 18 N -0.95 -61.72 13.96 21.44 0.30 -61.42 16 19 Si 0.95 45.82 27.47 68.60 1.88 47.70 16 20 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.86 6.77 -2.39 -0.02 0.84 16 26 H 0.34 5.95 9.04 -89.70 -0.81 5.14 16 27 H 0.34 6.11 7.01 -89.69 -0.63 5.48 16 28 H 0.08 1.13 6.61 -2.38 -0.02 1.11 16 29 H 0.07 1.34 6.54 -2.38 -0.02 1.32 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 2.09 5.84 -2.39 -0.01 2.07 16 35 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 2.69 6.46 -2.39 -0.02 2.68 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.02 6.19 -2.39 -0.01 2.00 16 40 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 41 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 42 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 Total: -1.00 -68.33 312.45 -0.57 -68.90 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.51 Total: 17.23 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.15 Total: -34.58 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -5.09 Total: -99.25 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.70 kcal Total: -68.33 -0.57 -68.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063194493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.571 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds