Wall clock time and date at job start Mon Mar 30 2020 03:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09007 * 109.46905 * 2 1 4 4 N 1.46900 * 109.47175 * 239.99778 * 2 1 3 5 5 C 1.52998 * 109.46798 * 119.99684 * 2 1 3 6 6 H 1.08998 * 109.46693 * 297.84567 * 5 2 1 7 7 C 1.53032 * 109.45512 * 57.82755 * 5 2 1 8 8 C 1.53124 * 109.28032 * 179.18947 * 7 5 2 9 9 C 1.53121 * 109.15730 * 302.34142 * 8 7 5 10 10 C 1.53035 * 109.27669 * 57.65388 * 9 8 7 11 11 N 1.46841 * 109.52624 * 300.81895 * 10 9 8 12 12 C 1.46900 * 111.00347 * 185.83961 * 11 10 9 13 13 C 1.52999 * 109.47007 * 69.11472 * 12 11 10 14 14 C 1.52999 * 109.47300 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47347 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99606 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99762 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00440 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99579 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47289 * 60.00641 * 19 17 15 21 21 H 1.48500 * 109.47267 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47332 * 300.00381 * 19 17 15 23 23 H 1.09004 * 109.46865 * 303.64856 * 1 2 3 24 24 H 1.09001 * 109.46814 * 63.64673 * 1 2 3 25 25 H 1.08994 * 109.46841 * 183.64520 * 1 2 3 26 26 H 1.00892 * 110.99686 * 176.04461 * 4 2 1 27 27 H 1.00904 * 110.99443 * 300.00101 * 4 2 1 28 28 H 1.09003 * 109.50187 * 299.12483 * 7 5 2 29 29 H 1.08999 * 109.51037 * 59.24425 * 7 5 2 30 30 H 1.09003 * 109.52294 * 182.43731 * 8 7 5 31 31 H 1.08996 * 109.57262 * 62.27765 * 8 7 5 32 32 H 1.09000 * 109.50548 * 297.71504 * 9 8 7 33 33 H 1.08998 * 109.50467 * 177.59151 * 9 8 7 34 34 H 1.09001 * 109.46204 * 180.80333 * 10 9 8 35 35 H 1.09005 * 109.45415 * 60.83091 * 10 9 8 36 36 H 1.09001 * 109.47244 * 189.11738 * 12 11 10 37 37 H 1.09004 * 109.47330 * 309.11729 * 12 11 10 38 38 H 1.09001 * 109.47336 * 300.00209 * 13 12 11 39 39 H 1.09001 * 109.47377 * 59.99950 * 13 12 11 40 40 H 1.09001 * 109.46897 * 300.00233 * 14 13 12 41 41 H 1.09001 * 109.47147 * 59.99564 * 14 13 12 42 42 H 0.97001 * 119.99936 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 1 1.7085 -0.1854 2.1387 7 6 1.4855 -2.1472 1.2766 8 6 2.0144 -2.8717 2.5176 9 6 3.5453 -2.8618 2.4909 10 6 4.0402 -1.4150 2.4283 11 7 3.5076 -0.7658 1.2237 12 6 4.0723 0.5801 1.0575 13 6 5.5569 0.4702 0.7044 14 6 6.1453 1.8720 0.5319 15 6 7.6075 1.7637 0.1834 16 1 8.0706 0.7922 0.0935 17 6 8.3536 2.9049 -0.0216 18 7 7.7895 4.0879 0.0874 19 14 10.1662 2.7707 -0.4529 20 1 10.3188 2.0100 -1.7192 21 1 10.7373 4.1312 -0.6203 22 1 10.8837 2.0641 0.6385 23 1 -0.3633 0.5695 0.8555 24 1 -0.3633 0.4562 -0.9209 25 1 -0.3633 -1.0255 0.0653 26 1 3.0262 -0.6501 -1.2558 27 1 1.6962 -1.6480 -1.2226 28 1 0.3965 -2.1136 1.3114 29 1 1.8052 -2.6794 0.3807 30 1 1.6567 -3.9014 2.5184 31 1 1.6624 -2.3631 3.4151 32 1 3.8976 -3.4051 1.6141 33 1 3.9282 -3.3386 3.3932 34 1 5.1296 -1.4049 2.3948 35 1 3.6990 -0.8761 3.3123 36 1 3.5457 1.0988 0.2565 37 1 3.9604 1.1384 1.9870 38 1 6.0836 -0.0485 1.5054 39 1 5.6690 -0.0881 -0.2251 40 1 5.6187 2.3910 -0.2690 41 1 6.0333 2.4299 1.4616 42 1 8.3146 4.8907 -0.0565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063194494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:36 Heat of formation + Delta-G solvation = -23.700136 kcal Electronic energy + Delta-G solvation = -18161.006250 eV Core-core repulsion = 15560.590371 eV Total energy + Delta-G solvation = -2600.415879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73616 -35.43310 -34.75916 -32.94001 -30.74861 -29.97526 -28.63656 -26.63255 -24.20320 -23.94406 -21.94818 -20.59017 -19.87322 -19.07878 -16.41310 -16.10413 -15.62906 -15.11670 -14.61753 -14.43191 -14.29693 -14.02860 -13.58967 -13.26180 -13.11891 -12.75661 -12.20536 -11.94378 -11.68722 -11.61200 -11.39710 -11.19674 -11.10050 -10.86368 -10.75047 -10.64105 -10.55004 -10.29558 -10.05964 -9.53938 -9.29414 -9.03669 -8.46561 -8.31206 -8.05774 -5.96615 -3.98699 3.35672 3.39805 3.42468 4.01457 4.49138 4.66339 4.69600 4.85916 4.93119 5.12506 5.22201 5.33772 5.34468 5.39188 5.48514 5.60111 5.63988 5.70867 5.75660 5.85324 5.86485 5.90183 5.98944 6.07487 6.13437 6.17485 6.22536 6.33166 6.37699 6.71934 6.81572 7.14708 7.30737 7.39742 7.47581 7.70737 7.72659 7.86444 8.03727 8.47012 9.08245 9.65145 11.14796 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.005134 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.493991 B = 5452.117178 C = 5993.678835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.084 0.916 4 N -0.836 5.836 5 C 0.048 3.952 6 H 0.037 0.963 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.116 4.116 10 C 0.055 3.945 11 N -0.533 5.533 12 C 0.047 3.953 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.354 0.646 27 H 0.332 0.668 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.027 0.973 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 -12.325 3.703 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 H 0.102 0.898 4 N -0.366 5.366 5 C -0.062 4.062 6 H 0.055 0.945 7 C -0.150 4.150 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.073 4.073 11 N -0.258 5.258 12 C -0.080 4.080 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.168 0.832 27 H 0.145 0.855 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.143 -11.858 2.871 18.678 hybrid contribution 1.322 -0.060 1.311 1.863 sum -12.821 -11.917 4.182 17.997 Atomic orbital electron populations 1.21866 0.94795 1.01759 1.01928 1.21528 0.94755 0.98414 0.87670 0.89825 1.59060 1.17901 1.20523 1.39066 1.22411 0.88844 0.96310 0.98662 0.94549 1.21665 0.99497 0.95247 0.98619 1.21569 0.96165 1.00018 0.97985 1.21586 0.95247 0.96698 1.01858 1.22098 1.00661 0.94015 0.90562 1.61973 1.04790 1.20930 1.38095 1.22436 0.97948 0.87556 1.00017 1.21621 0.91258 1.00807 1.00253 1.19062 0.95300 0.90304 0.96849 1.21204 0.94915 0.92348 1.47204 0.92790 1.25018 0.98402 0.95446 0.95573 1.69955 1.36241 0.97340 1.50060 0.86669 0.85387 0.77008 0.78993 1.20210 1.21321 1.20324 0.92659 0.91781 0.92608 0.83204 0.85547 0.91551 0.91365 0.92178 0.92565 0.91237 0.91941 0.89963 0.95459 0.90571 0.95493 0.93650 0.92673 0.96605 0.96983 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 37.16 0.34 -1.16 16 2 C 0.09 1.10 2.67 -67.71 -0.18 0.92 16 3 H 0.08 1.19 6.17 -51.92 -0.32 0.87 16 4 N -0.84 -10.63 9.16 -4.66 -0.04 -10.67 16 5 C 0.05 0.60 1.76 -67.72 -0.12 0.48 16 6 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 7 C -0.11 -1.16 4.67 -26.65 -0.12 -1.29 16 8 C -0.12 -1.20 6.00 -26.60 -0.16 -1.36 16 9 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 10 C 0.05 0.75 5.30 -3.84 -0.02 0.73 16 11 N -0.53 -7.65 3.83 -226.69 -0.87 -8.52 16 12 C 0.05 0.82 4.48 -3.82 -0.02 0.80 16 13 C -0.10 -2.10 5.15 -26.73 -0.14 -2.24 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.51 6.20 -51.93 -0.32 0.19 16 26 H 0.35 5.06 8.12 -39.30 -0.32 4.74 16 27 H 0.33 3.74 7.22 -39.29 -0.28 3.45 16 28 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 29 H 0.07 0.72 6.67 -51.93 -0.35 0.37 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.23 6.36 -51.93 -0.33 0.90 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 1.33 5.45 -51.93 -0.28 1.05 16 37 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.04 0.94 6.54 -51.93 -0.34 0.60 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -29.31 314.80 -9.07 -38.38 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.49 Total: 3.47 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.13 Total: -17.77 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.18 Total: -45.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.31 -9.07 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063194494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.683 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds