Wall clock time and date at job start Mon Mar 30 2020 03:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09007 * 109.46905 * 2 1 4 4 N 1.46900 * 109.47175 * 239.99778 * 2 1 3 5 5 C 1.52998 * 109.46798 * 119.99684 * 2 1 3 6 6 H 1.08998 * 109.46693 * 297.84567 * 5 2 1 7 7 C 1.53032 * 109.45512 * 57.82755 * 5 2 1 8 8 C 1.53124 * 109.28032 * 179.18947 * 7 5 2 9 9 C 1.53121 * 109.15730 * 302.34142 * 8 7 5 10 10 C 1.53035 * 109.27669 * 57.65388 * 9 8 7 11 11 N 1.46841 * 109.52624 * 300.81895 * 10 9 8 12 12 C 1.46900 * 111.00347 * 185.83961 * 11 10 9 13 13 C 1.52999 * 109.47007 * 69.11472 * 12 11 10 14 14 C 1.52999 * 109.47300 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47347 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99606 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99762 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00440 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99579 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47289 * 60.00641 * 19 17 15 21 21 H 1.48500 * 109.47267 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47332 * 300.00381 * 19 17 15 23 23 H 1.09004 * 109.46865 * 303.64856 * 1 2 3 24 24 H 1.09001 * 109.46814 * 63.64673 * 1 2 3 25 25 H 1.08994 * 109.46841 * 183.64520 * 1 2 3 26 26 H 1.00892 * 110.99686 * 176.04461 * 4 2 1 27 27 H 1.00904 * 110.99443 * 300.00101 * 4 2 1 28 28 H 1.09003 * 109.50187 * 299.12483 * 7 5 2 29 29 H 1.08999 * 109.51037 * 59.24425 * 7 5 2 30 30 H 1.09003 * 109.52294 * 182.43731 * 8 7 5 31 31 H 1.08996 * 109.57262 * 62.27765 * 8 7 5 32 32 H 1.09000 * 109.50548 * 297.71504 * 9 8 7 33 33 H 1.08998 * 109.50467 * 177.59151 * 9 8 7 34 34 H 1.09001 * 109.46204 * 180.80333 * 10 9 8 35 35 H 1.09005 * 109.45415 * 60.83091 * 10 9 8 36 36 H 1.09001 * 109.47244 * 189.11738 * 12 11 10 37 37 H 1.09004 * 109.47330 * 309.11729 * 12 11 10 38 38 H 1.09001 * 109.47336 * 300.00209 * 13 12 11 39 39 H 1.09001 * 109.47377 * 59.99950 * 13 12 11 40 40 H 1.09001 * 109.46897 * 300.00233 * 14 13 12 41 41 H 1.09001 * 109.47147 * 59.99564 * 14 13 12 42 42 H 0.97001 * 119.99936 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 1 1.7085 -0.1854 2.1387 7 6 1.4855 -2.1472 1.2766 8 6 2.0144 -2.8717 2.5176 9 6 3.5453 -2.8618 2.4909 10 6 4.0402 -1.4150 2.4283 11 7 3.5076 -0.7658 1.2237 12 6 4.0723 0.5801 1.0575 13 6 5.5569 0.4702 0.7044 14 6 6.1453 1.8720 0.5319 15 6 7.6075 1.7637 0.1834 16 1 8.0706 0.7922 0.0935 17 6 8.3536 2.9049 -0.0216 18 7 7.7895 4.0879 0.0874 19 14 10.1662 2.7707 -0.4529 20 1 10.3188 2.0100 -1.7192 21 1 10.7373 4.1312 -0.6203 22 1 10.8837 2.0641 0.6385 23 1 -0.3633 0.5695 0.8555 24 1 -0.3633 0.4562 -0.9209 25 1 -0.3633 -1.0255 0.0653 26 1 3.0262 -0.6501 -1.2558 27 1 1.6962 -1.6480 -1.2226 28 1 0.3965 -2.1136 1.3114 29 1 1.8052 -2.6794 0.3807 30 1 1.6567 -3.9014 2.5184 31 1 1.6624 -2.3631 3.4151 32 1 3.8976 -3.4051 1.6141 33 1 3.9282 -3.3386 3.3932 34 1 5.1296 -1.4049 2.3948 35 1 3.6990 -0.8761 3.3123 36 1 3.5457 1.0988 0.2565 37 1 3.9604 1.1384 1.9870 38 1 6.0836 -0.0485 1.5054 39 1 5.6690 -0.0881 -0.2251 40 1 5.6187 2.3910 -0.2690 41 1 6.0333 2.4299 1.4616 42 1 8.3146 4.8907 -0.0565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063194494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:36 Heat of formation + Delta-G solvation = -42.852228 kcal Electronic energy + Delta-G solvation = -18161.836747 eV Core-core repulsion = 15560.590371 eV Total energy + Delta-G solvation = -2601.246376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80854 -36.66573 -36.12700 -34.74937 -32.48838 -30.96165 -29.54800 -28.42111 -25.61786 -25.04843 -23.51442 -21.61537 -21.50365 -20.09553 -18.48759 -17.27382 -16.84530 -16.45159 -16.23224 -15.69290 -15.47276 -15.20618 -14.57708 -14.51109 -14.41769 -14.14807 -13.67323 -13.46690 -13.13689 -12.78280 -12.65051 -12.57542 -12.48019 -12.41022 -12.10475 -12.01564 -11.66971 -11.53164 -11.42348 -11.29312 -11.10753 -10.88073 -10.54847 -9.50178 -9.25722 -8.20199 -6.31541 1.39467 1.42851 1.50767 2.40625 2.86049 3.12828 3.68712 3.76050 3.92046 3.98507 4.11512 4.20719 4.30615 4.34649 4.44019 4.45287 4.54858 4.66327 4.72668 4.78362 4.81904 4.95437 4.97366 4.98630 5.03886 5.10858 5.17359 5.19915 5.28791 5.31764 5.35664 5.45510 5.52205 5.73188 5.85038 6.08266 6.20821 6.26727 6.38974 6.71608 6.84969 7.37757 8.91597 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.005134 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.493991 B = 5452.117178 C = 5993.678835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.058 0.942 4 N -0.838 5.838 5 C 0.050 3.950 6 H 0.030 0.970 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.050 3.950 11 N -0.530 5.530 12 C 0.062 3.938 13 C -0.084 4.084 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.059 0.941 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.267 1.267 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.343 0.657 27 H 0.342 0.658 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.014 0.986 38 H 0.046 0.954 39 H 0.054 0.946 40 H -0.009 1.009 41 H -0.015 1.015 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.347 -14.307 3.784 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 H 0.076 0.924 4 N -0.368 5.368 5 C -0.060 4.060 6 H 0.048 0.952 7 C -0.145 4.145 8 C -0.155 4.155 9 C -0.148 4.148 10 C -0.078 4.078 11 N -0.255 5.255 12 C -0.066 4.066 13 C -0.122 4.122 14 C -0.010 4.010 15 C -0.581 4.581 16 H 0.077 0.923 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.009 0.991 41 H 0.004 0.996 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.605 -13.867 2.957 20.356 hybrid contribution 1.427 0.581 1.298 2.015 sum -13.178 -13.286 4.255 19.191 Atomic orbital electron populations 1.21818 0.92795 1.02969 1.02119 1.21515 0.96283 0.96999 0.87641 0.92404 1.59056 1.17083 1.21358 1.39262 1.22480 0.87180 0.98070 0.98265 0.95216 1.21662 1.00532 0.93304 0.98990 1.21573 0.94949 1.01238 0.97710 1.21556 0.96363 0.94412 1.02468 1.22169 0.99786 0.95864 0.89942 1.61942 1.06292 1.18578 1.38673 1.22107 0.95847 0.89416 0.99216 1.21337 0.93361 0.97228 1.00233 1.18951 0.94808 0.92846 0.94421 1.21642 0.96206 0.92789 1.47429 0.92290 1.25988 1.03679 0.94941 0.95191 1.70095 1.38302 0.98190 1.50837 0.85499 0.79002 0.77340 0.79205 1.19101 1.20755 1.19185 0.91902 0.92152 0.90889 0.84392 0.84383 0.89620 0.91220 0.90061 0.92454 0.91487 0.90509 0.91638 0.95897 0.90933 0.96721 0.93568 0.92723 0.99102 0.99616 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 2 C 0.09 2.12 2.67 44.92 0.12 2.24 16 3 H 0.06 1.69 6.17 -2.38 -0.01 1.68 16 4 N -0.84 -20.62 9.16 -168.66 -1.55 -22.17 16 5 C 0.05 1.18 1.76 44.93 0.08 1.26 16 6 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 7 C -0.11 -1.91 4.67 30.65 0.14 -1.77 16 8 C -0.12 -1.98 6.00 30.68 0.18 -1.80 16 9 C -0.11 -2.23 6.09 30.65 0.19 -2.04 16 10 C 0.05 1.35 5.30 86.33 0.46 1.80 16 11 N -0.53 -15.05 3.83 -871.12 -3.34 -18.39 16 12 C 0.06 2.21 4.48 86.30 0.39 2.59 16 13 C -0.08 -3.57 5.15 30.59 0.16 -3.41 16 14 C 0.03 1.49 4.97 29.85 0.15 1.64 16 15 C -0.54 -31.73 9.11 25.60 0.23 -31.49 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 17 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 18 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 19 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.12 6.20 -2.39 -0.01 1.10 16 26 H 0.34 9.75 8.12 -89.70 -0.73 9.02 16 27 H 0.34 7.09 7.22 -89.69 -0.65 6.44 16 28 H 0.09 1.25 6.36 -2.39 -0.02 1.23 16 29 H 0.07 1.26 6.67 -2.39 -0.02 1.24 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.96 6.36 -2.39 -0.02 1.94 16 35 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.07 2.65 5.45 -2.39 -0.01 2.64 16 37 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 38 H 0.05 1.95 6.54 -2.39 -0.02 1.93 16 39 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 42 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -63.72 314.80 0.26 -63.46 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.39 Total: 20.28 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.22 Total: -32.47 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -4.60 Total: -98.33 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.72 0.26 -63.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063194494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.606 kcal (2) G-P(sol) polarization free energy of solvation -63.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds