Wall clock time and date at job start Mon Mar 30 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47134 * 2 1 4 4 C 1.50695 * 109.47448 * 239.99739 * 2 1 3 5 5 H 1.08005 * 120.00624 * 240.00292 * 4 2 1 6 6 C 1.37879 * 120.00263 * 59.99750 * 4 2 1 7 7 N 1.31507 * 120.00328 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99486 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46697 * 269.99596 * 8 6 4 10 10 H 1.48500 * 109.47224 * 29.99834 * 8 6 4 11 11 H 1.48499 * 109.46950 * 149.99906 * 8 6 4 12 12 N 1.46906 * 109.47284 * 119.99789 * 2 1 3 13 13 C 1.46903 * 110.99996 * 275.00207 * 12 2 1 14 14 C 1.52999 * 109.47193 * 174.48552 * 13 12 2 15 15 N 1.46896 * 110.01528 * 184.02534 * 14 13 12 16 16 C 1.46902 * 111.00030 * 300.49363 * 15 14 13 17 17 C 1.46904 * 111.00371 * 64.45088 * 15 14 13 18 18 C 1.54265 * 110.03068 * 62.63176 * 14 13 12 19 19 C 1.54963 * 104.15740 * 217.13810 * 18 14 13 20 20 C 1.54892 * 102.77984 * 37.88753 * 19 18 14 21 21 C 1.53879 * 110.02938 * 305.41504 * 14 13 12 22 22 H 1.09004 * 109.47139 * 299.99964 * 1 2 3 23 23 H 1.08998 * 109.47145 * 60.00266 * 1 2 3 24 24 H 1.08998 * 109.46904 * 180.02562 * 1 2 3 25 25 H 0.97003 * 120.00203 * 179.97438 * 7 6 4 26 26 H 1.00892 * 111.00122 * 151.04531 * 12 2 1 27 27 H 1.09000 * 109.46899 * 294.48966 * 13 12 2 28 28 H 1.09005 * 109.46976 * 54.48017 * 13 12 2 29 29 H 1.09001 * 109.46766 * 55.73544 * 16 15 14 30 30 H 1.09001 * 109.47448 * 175.72659 * 16 15 14 31 31 H 1.08993 * 109.47491 * 295.73191 * 16 15 14 32 32 H 1.09002 * 109.46673 * 59.99779 * 17 15 14 33 33 H 1.08995 * 109.47022 * 179.97438 * 17 15 14 34 34 H 1.09000 * 109.46980 * 300.00244 * 17 15 14 35 35 H 1.08995 * 110.48497 * 335.78322 * 18 14 13 36 36 H 1.08994 * 110.48290 * 98.43248 * 18 14 13 37 37 H 1.09004 * 110.72265 * 279.57650 * 19 18 14 38 38 H 1.08999 * 110.92755 * 156.30031 * 19 18 14 39 39 H 1.09000 * 110.48525 * 203.40590 * 20 19 18 40 40 H 1.08992 * 110.48608 * 80.76432 * 20 19 18 41 41 H 1.08999 * 110.02792 * 238.57207 * 21 14 13 42 42 H 1.08996 * 110.03159 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 2.1373 -0.8598 -3.5564 8 14 0.6259 1.2797 -2.6542 9 1 -0.8020 0.8741 -2.6994 10 1 0.8491 2.1772 -1.4923 11 1 0.9772 1.9951 -3.9071 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2227 2.3470 14 6 2.4632 -0.5614 3.6044 15 7 2.4358 0.3238 4.7764 16 6 3.3741 1.4423 4.6133 17 6 1.0748 0.8119 5.0359 18 6 3.8686 -1.1757 3.4388 19 6 3.7641 -2.5548 4.1377 20 6 2.3375 -3.0239 3.7586 21 6 1.4901 -1.7359 3.8080 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.9027 -0.5286 -4.4375 26 1 2.9173 -1.1205 1.0288 27 1 2.8312 0.9918 2.1577 28 1 1.1090 0.6912 2.4917 29 1 3.1460 1.9763 3.6909 30 1 3.2791 2.1226 5.4597 31 1 4.3931 1.0582 4.5684 32 1 0.4144 -0.0352 5.2221 33 1 1.0831 1.4644 5.9089 34 1 0.7168 1.3680 4.1695 35 1 4.1082 -1.3005 2.3828 36 1 4.6169 -0.5539 3.9300 37 1 3.8612 -2.4480 5.2181 38 1 4.5135 -3.2452 3.7505 39 1 1.9698 -3.7506 4.4830 40 1 2.3295 -3.4475 2.7544 41 1 0.9982 -1.6494 4.7768 42 1 0.7464 -1.7469 3.0113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068482582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:51 Heat of formation + Delta-G solvation = -9.408435 kcal Electronic energy + Delta-G solvation = -18754.003616 eV Core-core repulsion = 16154.207472 eV Total energy + Delta-G solvation = -2599.796144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89631 -37.45354 -35.98103 -34.44198 -31.84112 -30.30120 -28.76387 -27.76634 -27.23311 -25.15018 -24.12041 -21.86204 -21.34519 -19.45674 -18.69870 -17.60128 -17.11666 -16.41997 -15.87013 -15.64387 -15.54465 -15.06718 -14.77761 -14.68940 -14.09129 -13.96361 -13.85408 -13.34413 -13.01701 -12.84011 -12.71648 -12.65082 -12.53066 -12.14126 -11.91888 -11.85651 -11.63938 -11.61045 -11.49451 -11.42592 -11.16108 -11.08122 -10.81424 -9.29998 -9.01940 -8.34832 -6.39234 1.26225 1.30440 1.40823 2.26505 2.98881 3.02164 3.43675 3.63713 3.89861 4.10011 4.26183 4.33164 4.43341 4.48738 4.51343 4.55738 4.63171 4.65416 4.70413 4.73708 4.84716 4.88503 4.89901 4.93841 4.97461 5.10069 5.13799 5.19882 5.24860 5.25497 5.34940 5.45741 5.48123 5.58114 5.65303 5.92813 6.18108 6.22827 6.47330 6.62092 6.79780 7.27453 8.81520 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.006950 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.158849 B = 4027.959865 C = 4425.121569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.187 3.813 3 H -0.013 1.013 4 C -0.523 4.523 5 H 0.042 0.958 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.951 3.049 9 H -0.265 1.265 10 H -0.257 1.257 11 H -0.296 1.296 12 N -0.665 5.665 13 C 0.039 3.961 14 C 0.117 3.883 15 N -0.529 5.529 16 C 0.014 3.986 17 C 0.016 3.984 18 C -0.115 4.115 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.101 4.101 22 H 0.050 0.950 23 H 0.030 0.970 24 H 0.053 0.947 25 H 0.267 0.733 26 H 0.335 0.665 27 H 0.012 0.988 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.017 0.983 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 2.833 18.761 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.077 3.923 3 H 0.005 0.995 4 C -0.562 4.562 5 H 0.060 0.940 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.181 1.181 11 H -0.223 1.223 12 N -0.297 5.297 13 C -0.092 4.092 14 C 0.027 3.973 15 N -0.252 5.252 16 C -0.134 4.134 17 C -0.132 4.132 18 C -0.153 4.153 19 C -0.146 4.146 20 C -0.155 4.155 21 C -0.139 4.139 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.759 2.316 19.172 19.327 hybrid contribution 0.141 1.604 -1.894 2.486 sum -0.618 3.919 17.278 17.728 Atomic orbital electron populations 1.21952 0.97334 1.01026 0.98528 1.19344 0.92755 0.91793 0.88369 0.99547 1.21373 1.31485 1.12702 0.90604 0.93974 1.25754 0.97156 0.99838 0.95382 1.70024 1.47412 1.42321 0.98598 0.85820 0.79358 0.79953 0.77021 1.19110 1.18110 1.22346 1.60460 1.32781 1.32296 1.04133 1.22586 0.99367 0.94433 0.92818 1.21657 0.96305 0.92864 0.86478 1.62444 1.07870 1.18359 1.36533 1.22528 0.97305 0.93097 1.00425 1.22516 0.89808 1.00522 1.00350 1.22495 0.95464 0.97563 0.99821 1.22358 0.96621 0.95190 1.00398 1.22246 0.95436 0.96960 1.00828 1.22114 0.97477 0.93006 1.01266 0.93089 0.95150 0.92779 0.92383 0.84590 0.96940 0.92061 0.96478 0.89940 0.90834 0.90627 0.89953 0.96417 0.92905 0.90638 0.90640 0.91579 0.90888 0.92998 0.90815 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.89 71.98 0.64 -5.05 16 2 C 0.19 8.86 2.19 44.17 0.10 8.96 16 3 H -0.01 -0.64 6.92 -2.39 -0.02 -0.65 16 4 C -0.52 -29.92 9.17 25.60 0.23 -29.69 16 5 H 0.04 2.65 7.86 -2.91 -0.02 2.63 16 6 C 0.02 0.98 5.45 84.66 0.46 1.44 16 7 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 8 Si 0.95 45.56 24.37 68.60 1.67 47.23 16 9 H -0.27 -12.09 6.87 99.48 0.68 -11.41 16 10 H -0.26 -11.64 6.53 99.48 0.65 -10.99 16 11 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 12 N -0.66 -26.73 5.31 -495.43 -2.63 -29.36 16 13 C 0.04 1.31 3.62 86.30 0.31 1.63 16 14 C 0.12 3.19 0.39 4.25 0.00 3.19 16 15 N -0.53 -12.46 4.81 -894.56 -4.30 -16.76 16 16 C 0.01 0.31 9.00 127.69 1.15 1.46 16 17 C 0.02 0.34 8.94 127.69 1.14 1.48 16 18 C -0.12 -3.05 5.75 31.69 0.18 -2.87 16 19 C -0.11 -2.52 6.91 31.91 0.22 -2.29 16 20 C -0.12 -2.95 6.83 31.67 0.22 -2.73 16 21 C -0.10 -2.71 5.29 31.32 0.17 -2.54 16 22 H 0.05 1.91 7.38 -2.39 -0.02 1.90 16 23 H 0.03 1.34 3.27 -2.39 -0.01 1.34 16 24 H 0.05 2.37 8.14 -2.39 -0.02 2.36 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.33 13.98 6.35 -89.70 -0.57 13.41 16 27 H 0.01 0.44 6.58 -2.39 -0.02 0.42 16 28 H 0.06 2.08 5.56 -2.38 -0.01 2.06 16 29 H 0.02 0.41 6.21 -2.39 -0.01 0.40 16 30 H 0.08 1.45 8.05 -2.39 -0.02 1.43 16 31 H 0.07 1.52 6.21 -2.39 -0.01 1.51 16 32 H 0.08 1.54 6.14 -2.39 -0.01 1.53 16 33 H 0.08 1.41 8.07 -2.39 -0.02 1.39 16 34 H 0.02 0.41 6.38 -2.39 -0.02 0.40 16 35 H 0.05 1.60 6.09 -2.39 -0.01 1.58 16 36 H 0.08 1.83 5.89 -2.39 -0.01 1.81 16 37 H 0.07 1.60 8.14 -2.38 -0.02 1.59 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.78 6.15 -2.39 -0.01 1.76 16 42 H 0.06 1.91 7.18 -2.39 -0.02 1.89 16 Total: -1.00 -62.39 300.68 0.21 -62.18 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.35 Total: 22.35 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.82 Total: -27.02 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -6.63 Total: -104.73 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -62.39 0.21 -62.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068482582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.768 kcal (2) G-P(sol) polarization free energy of solvation -62.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds