Wall clock time and date at job start Mon Mar 30 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47052 * 2 1 4 4 C 1.50697 * 109.47078 * 239.99650 * 2 1 3 5 5 H 1.08002 * 119.99841 * 274.99332 * 4 2 1 6 6 C 1.37881 * 119.99863 * 95.00004 * 4 2 1 7 7 N 1.31516 * 119.99866 * 184.91425 * 6 4 2 8 8 Si 1.86793 * 119.99955 * 4.91132 * 6 4 2 9 9 H 1.48501 * 109.47175 * 84.83529 * 8 6 4 10 10 H 1.48499 * 109.47237 * 204.83425 * 8 6 4 11 11 H 1.48498 * 109.47309 * 324.83272 * 8 6 4 12 12 N 1.46903 * 109.47228 * 119.99675 * 2 1 3 13 13 C 1.46903 * 111.00170 * 275.00263 * 12 2 1 14 14 C 1.52995 * 109.47408 * 179.97438 * 13 12 2 15 15 C 1.52999 * 109.47269 * 179.97438 * 14 13 12 16 16 C 1.53119 * 109.52201 * 294.68360 * 15 14 13 17 17 C 1.53042 * 109.27687 * 182.44216 * 16 15 14 18 18 N 1.46839 * 109.52407 * 59.17568 * 17 16 15 19 19 C 1.46907 * 110.99984 * 174.15976 * 18 17 16 20 20 C 1.46847 * 111.20095 * 298.26021 * 18 17 16 21 21 C 1.53031 * 109.52267 * 61.74349 * 20 18 17 22 22 H 1.09001 * 109.46929 * 175.05005 * 1 2 3 23 23 H 1.09004 * 109.47029 * 295.04419 * 1 2 3 24 24 H 1.08992 * 109.47311 * 55.04688 * 1 2 3 25 25 H 0.96992 * 119.99800 * 179.97438 * 7 6 4 26 26 H 1.00904 * 110.99874 * 38.95398 * 12 2 1 27 27 H 1.09005 * 109.46588 * 299.99964 * 13 12 2 28 28 H 1.08999 * 109.47176 * 59.99209 * 13 12 2 29 29 H 1.09003 * 109.46841 * 299.99928 * 14 13 12 30 30 H 1.09001 * 109.46896 * 59.99818 * 14 13 12 31 31 H 1.09004 * 109.52388 * 54.87210 * 15 14 13 32 32 H 1.09000 * 109.50391 * 302.38048 * 16 15 14 33 33 H 1.09001 * 109.50579 * 62.50054 * 16 15 14 34 34 H 1.09004 * 109.45783 * 299.16083 * 17 16 15 35 35 H 1.09001 * 109.46040 * 179.19515 * 17 16 15 36 36 H 1.08999 * 109.46732 * 184.21123 * 19 18 17 37 37 H 1.08998 * 109.46833 * 304.21401 * 19 18 17 38 38 H 1.09000 * 109.46866 * 64.21420 * 19 18 17 39 39 H 1.09003 * 109.45979 * 301.72309 * 20 18 17 40 40 H 1.09008 * 109.45493 * 181.75408 * 20 18 17 41 41 H 1.09003 * 109.50084 * 180.88049 * 21 20 18 42 42 H 1.08998 * 109.53702 * 60.78393 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2288 6 6 2.3602 0.0120 -2.3581 7 7 2.7059 -0.6133 -3.4622 8 14 2.3133 1.8789 -2.3175 9 1 3.5989 2.3949 -1.7823 10 1 2.1055 2.3989 -3.6929 11 1 1.1984 2.3273 -1.4452 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5330 3.5746 15 6 2.6610 0.4203 4.7694 16 6 3.7099 1.5034 4.5026 17 6 3.8146 2.4175 5.7256 18 7 4.1933 1.6231 6.9010 19 6 4.4382 2.4871 8.0637 20 6 3.1775 0.6071 7.2050 21 6 3.0539 -0.3610 6.0263 22 1 -0.3633 -1.0239 -0.0887 23 1 -0.3633 0.4350 0.9311 24 1 -0.3633 0.5887 -0.8422 25 1 2.9362 -0.1051 -4.2555 26 1 1.4495 -1.4979 1.4101 27 1 2.7588 1.0463 2.1182 28 1 1.0871 0.6165 2.5525 29 1 1.9183 -1.3563 3.8031 30 1 3.5903 -0.9270 3.3692 31 1 1.6863 0.8848 4.9191 32 1 4.6762 1.0357 4.3141 33 1 3.4135 2.0908 3.6336 34 1 2.8516 2.8956 5.9052 35 1 4.5709 3.1813 5.5444 36 1 4.7889 1.8811 8.8991 37 1 5.1944 3.2303 7.8111 38 1 3.5128 2.9907 8.3434 39 1 2.2175 1.0937 7.3777 40 1 3.4713 0.0560 8.0984 41 1 2.2888 -1.1057 6.2459 42 1 4.0095 -0.8587 5.8616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068615369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:09 Heat of formation + Delta-G solvation = -17.238252 kcal Electronic energy + Delta-G solvation = -17618.319121 eV Core-core repulsion = 15018.183450 eV Total energy + Delta-G solvation = -2600.135670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.29990 -36.58896 -34.67670 -32.32513 -30.99723 -30.44903 -27.95409 -25.47632 -25.07751 -23.45781 -22.55957 -20.78679 -19.97982 -19.63487 -16.89437 -15.99088 -15.26325 -15.09674 -14.72732 -14.51372 -14.35385 -13.82345 -13.53384 -13.03420 -12.92318 -12.54013 -12.40802 -12.34825 -12.03596 -11.68663 -11.61998 -11.34798 -11.25028 -11.02220 -10.83056 -10.69628 -10.48507 -10.36247 -10.06782 -9.86673 -9.66260 -9.10210 -8.51771 -8.47783 -7.29716 -6.01519 -3.98184 3.31142 3.38786 3.38820 3.76114 4.45600 4.64684 4.71652 4.77156 4.97804 5.08399 5.18224 5.22671 5.33851 5.36579 5.44627 5.53731 5.57330 5.60746 5.64858 5.69212 5.79651 5.95986 5.99592 6.08255 6.15712 6.19149 6.27339 6.33631 6.39948 6.57220 6.60511 6.66313 6.87122 6.89659 6.91583 7.17174 7.75906 8.03694 8.45129 8.72703 9.06590 9.61665 11.12369 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037403 B = 0.004536 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.429558 B = 6171.886239 C = 6534.366372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.179 3.821 3 H 0.035 0.965 4 C -0.491 4.491 5 H 0.076 0.924 6 C 0.069 3.931 7 N -0.902 5.902 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.676 5.676 13 C 0.055 3.945 14 C -0.109 4.109 15 C -0.087 4.087 16 C -0.114 4.114 17 C 0.055 3.945 18 N -0.544 5.544 19 C 0.025 3.975 20 C 0.056 3.944 21 C -0.111 4.111 22 H 0.048 0.952 23 H 0.019 0.981 24 H 0.048 0.952 25 H 0.263 0.737 26 H 0.326 0.674 27 H 0.064 0.936 28 H 0.013 0.987 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 5.407 21.487 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.071 3.929 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.541 5.541 8 Si 0.704 3.296 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.194 1.194 12 N -0.305 5.305 13 C -0.074 4.074 14 C -0.147 4.147 15 C -0.106 4.106 16 C -0.152 4.152 17 C -0.072 4.072 18 N -0.269 5.269 19 C -0.123 4.123 20 C -0.072 4.072 21 C -0.149 4.149 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.143 0.857 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.275 5.283 21.008 21.699 hybrid contribution -1.757 1.629 0.313 2.416 sum -0.482 6.912 21.321 22.418 Atomic orbital electron populations 1.22640 1.01137 1.00697 0.98512 1.19649 0.89288 0.94642 0.89354 0.94713 1.20892 1.42477 0.95714 0.93846 0.90618 1.24981 0.94848 0.98004 0.95416 1.69894 1.46918 1.35585 1.01680 0.86899 0.78887 0.86896 0.76949 1.20146 1.21564 1.19429 1.60909 1.57807 1.08885 1.02932 1.22019 0.97981 0.96280 0.91158 1.21594 1.02311 0.97529 0.93294 1.21185 0.98425 0.96150 0.94813 1.21705 1.00094 0.96943 0.96430 1.22134 0.98889 0.95494 0.90729 1.61926 1.44882 1.15304 1.04754 1.22347 0.99970 0.96744 0.93270 1.22101 0.92753 0.93781 0.98527 1.21639 1.02154 0.97277 0.93822 0.93284 0.96211 0.93326 0.92730 0.85729 0.91765 0.96861 0.92476 0.90977 0.91940 0.90764 0.91041 0.95176 0.90902 0.91494 0.91445 0.95947 0.95194 0.91022 0.91608 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.16 37.16 0.34 -3.32 16 2 C 0.18 4.28 2.23 -68.87 -0.15 4.13 16 3 H 0.03 0.86 4.95 -51.93 -0.26 0.60 16 4 C -0.49 -14.03 9.19 -34.44 -0.32 -14.34 16 5 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 8 Si 0.88 21.89 26.99 -169.99 -4.59 17.30 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.27 -6.43 6.82 56.52 0.39 -6.04 16 12 N -0.68 -14.10 6.23 -107.95 -0.67 -14.78 16 13 C 0.06 0.95 5.25 -3.83 -0.02 0.93 16 14 C -0.11 -1.52 4.95 -26.73 -0.13 -1.65 16 15 C -0.09 -1.02 2.25 -90.50 -0.20 -1.23 16 16 C -0.11 -1.36 5.08 -26.65 -0.14 -1.50 16 17 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 18 N -0.54 -5.72 4.91 -242.96 -1.19 -6.91 16 19 C 0.03 0.21 9.59 60.07 0.58 0.79 16 20 C 0.06 0.55 5.46 -3.84 -0.02 0.53 16 21 C -0.11 -1.16 5.38 -26.65 -0.14 -1.30 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.02 0.37 7.35 -51.93 -0.38 -0.02 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.33 6.36 8.48 -39.29 -0.33 6.03 16 27 H 0.06 1.14 6.55 -51.93 -0.34 0.80 16 28 H 0.01 0.22 7.36 -51.93 -0.38 -0.16 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.89 6.71 -51.93 -0.35 0.54 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.62 8.12 -51.92 -0.42 0.20 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -30.38 322.37 -9.10 -39.48 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.95 Total: 1.70 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.33 Total: -14.48 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -1.09 Total: -48.86 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.59 Total: 17.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.38 -9.10 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068615369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.247 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds