Wall clock time and date at job start Mon Mar 30 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47052 * 2 1 4 4 C 1.50697 * 109.47078 * 239.99650 * 2 1 3 5 5 H 1.08002 * 119.99841 * 274.99332 * 4 2 1 6 6 C 1.37881 * 119.99863 * 95.00004 * 4 2 1 7 7 N 1.31516 * 119.99866 * 184.91425 * 6 4 2 8 8 Si 1.86793 * 119.99955 * 4.91132 * 6 4 2 9 9 H 1.48501 * 109.47175 * 84.83529 * 8 6 4 10 10 H 1.48499 * 109.47237 * 204.83425 * 8 6 4 11 11 H 1.48498 * 109.47309 * 324.83272 * 8 6 4 12 12 N 1.46903 * 109.47228 * 119.99675 * 2 1 3 13 13 C 1.46903 * 111.00170 * 275.00263 * 12 2 1 14 14 C 1.52995 * 109.47408 * 179.97438 * 13 12 2 15 15 C 1.52999 * 109.47269 * 179.97438 * 14 13 12 16 16 C 1.53119 * 109.52201 * 294.68360 * 15 14 13 17 17 C 1.53042 * 109.27687 * 182.44216 * 16 15 14 18 18 N 1.46839 * 109.52407 * 59.17568 * 17 16 15 19 19 C 1.46907 * 110.99984 * 174.15976 * 18 17 16 20 20 C 1.46847 * 111.20095 * 298.26021 * 18 17 16 21 21 C 1.53031 * 109.52267 * 61.74349 * 20 18 17 22 22 H 1.09001 * 109.46929 * 175.05005 * 1 2 3 23 23 H 1.09004 * 109.47029 * 295.04419 * 1 2 3 24 24 H 1.08992 * 109.47311 * 55.04688 * 1 2 3 25 25 H 0.96992 * 119.99800 * 179.97438 * 7 6 4 26 26 H 1.00904 * 110.99874 * 38.95398 * 12 2 1 27 27 H 1.09005 * 109.46588 * 299.99964 * 13 12 2 28 28 H 1.08999 * 109.47176 * 59.99209 * 13 12 2 29 29 H 1.09003 * 109.46841 * 299.99928 * 14 13 12 30 30 H 1.09001 * 109.46896 * 59.99818 * 14 13 12 31 31 H 1.09004 * 109.52388 * 54.87210 * 15 14 13 32 32 H 1.09000 * 109.50391 * 302.38048 * 16 15 14 33 33 H 1.09001 * 109.50579 * 62.50054 * 16 15 14 34 34 H 1.09004 * 109.45783 * 299.16083 * 17 16 15 35 35 H 1.09001 * 109.46040 * 179.19515 * 17 16 15 36 36 H 1.08999 * 109.46732 * 184.21123 * 19 18 17 37 37 H 1.08998 * 109.46833 * 304.21401 * 19 18 17 38 38 H 1.09000 * 109.46866 * 64.21420 * 19 18 17 39 39 H 1.09003 * 109.45979 * 301.72309 * 20 18 17 40 40 H 1.09008 * 109.45493 * 181.75408 * 20 18 17 41 41 H 1.09003 * 109.50084 * 180.88049 * 21 20 18 42 42 H 1.08998 * 109.53702 * 60.78393 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2288 6 6 2.3602 0.0120 -2.3581 7 7 2.7059 -0.6133 -3.4622 8 14 2.3133 1.8789 -2.3175 9 1 3.5989 2.3949 -1.7823 10 1 2.1055 2.3989 -3.6929 11 1 1.1984 2.3273 -1.4452 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5330 3.5746 15 6 2.6610 0.4203 4.7694 16 6 3.7099 1.5034 4.5026 17 6 3.8146 2.4175 5.7256 18 7 4.1933 1.6231 6.9010 19 6 4.4382 2.4871 8.0637 20 6 3.1775 0.6071 7.2050 21 6 3.0539 -0.3610 6.0263 22 1 -0.3633 -1.0239 -0.0887 23 1 -0.3633 0.4350 0.9311 24 1 -0.3633 0.5887 -0.8422 25 1 2.9362 -0.1051 -4.2555 26 1 1.4495 -1.4979 1.4101 27 1 2.7588 1.0463 2.1182 28 1 1.0871 0.6165 2.5525 29 1 1.9183 -1.3563 3.8031 30 1 3.5903 -0.9270 3.3692 31 1 1.6863 0.8848 4.9191 32 1 4.6762 1.0357 4.3141 33 1 3.4135 2.0908 3.6336 34 1 2.8516 2.8956 5.9052 35 1 4.5709 3.1813 5.5444 36 1 4.7889 1.8811 8.8991 37 1 5.1944 3.2303 7.8111 38 1 3.5128 2.9907 8.3434 39 1 2.2175 1.0937 7.3777 40 1 3.4713 0.0560 8.0984 41 1 2.2888 -1.1057 6.2459 42 1 4.0095 -0.8587 5.8616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068615369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:08 Heat of formation + Delta-G solvation = -38.393168 kcal Electronic energy + Delta-G solvation = -17619.236467 eV Core-core repulsion = 15018.183450 eV Total energy + Delta-G solvation = -2601.053016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17141 -38.12167 -35.89363 -34.29891 -32.06302 -31.70385 -29.22114 -27.25284 -26.37087 -24.38240 -23.57304 -21.96199 -21.76026 -20.57935 -19.02106 -16.88032 -16.66088 -16.21796 -16.01799 -15.75226 -15.47027 -15.14921 -14.85181 -14.50735 -14.25217 -14.00872 -13.65768 -13.30075 -13.22272 -13.14567 -12.91185 -12.66232 -12.59384 -12.37364 -12.09198 -11.98104 -11.90923 -11.77264 -11.48487 -11.23299 -11.08823 -10.96687 -10.65855 -9.26496 -8.95181 -8.25767 -6.27476 1.33748 1.35449 1.44974 2.35509 3.02974 3.05160 3.53634 3.82245 3.89400 4.03484 4.21665 4.28597 4.40172 4.44259 4.50824 4.52683 4.60208 4.62917 4.68081 4.70363 4.74962 4.79731 4.84136 4.93058 5.01236 5.01663 5.03423 5.10329 5.18789 5.23948 5.31503 5.38772 5.44580 5.59030 5.69771 6.09431 6.14617 6.17622 6.70156 6.78335 6.83734 7.36547 8.91969 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037403 B = 0.004536 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.429558 B = 6171.886239 C = 6534.366372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.181 3.819 3 H 0.033 0.967 4 C -0.498 4.498 5 H 0.031 0.969 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.943 3.057 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.247 1.247 12 N -0.692 5.692 13 C 0.058 3.942 14 C -0.099 4.099 15 C -0.080 4.080 16 C -0.114 4.114 17 C 0.059 3.941 18 N -0.560 5.560 19 C 0.025 3.975 20 C 0.057 3.943 21 C -0.108 4.108 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.265 0.735 26 H 0.333 0.667 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.033 0.967 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 7.046 23.826 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.072 3.928 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.049 0.951 6 C -0.189 4.189 7 N -0.593 5.593 8 Si 0.767 3.233 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.170 1.170 12 N -0.322 5.322 13 C -0.071 4.071 14 C -0.137 4.137 15 C -0.099 4.099 16 C -0.152 4.152 17 C -0.069 4.069 18 N -0.285 5.285 19 C -0.123 4.123 20 C -0.071 4.071 21 C -0.145 4.145 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.151 0.849 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.479 6.918 23.384 24.391 hybrid contribution -1.482 1.005 -0.374 1.830 sum -1.003 7.923 23.010 24.357 Atomic orbital electron populations 1.22478 0.98958 1.00940 0.99873 1.19479 0.90784 0.93845 0.88665 0.94936 1.21198 1.42199 0.94058 0.96195 0.95060 1.25871 0.94650 1.03499 0.94860 1.70053 1.48834 1.37794 1.02633 0.85815 0.79743 0.80242 0.77483 1.19563 1.21167 1.17049 1.60681 1.58142 1.09833 1.03539 1.22059 0.98566 0.95700 0.90753 1.21494 1.01505 0.97927 0.92800 1.21119 0.98624 0.95714 0.94450 1.21672 0.99416 0.97130 0.96951 1.22070 0.99215 0.95250 0.90373 1.61935 1.45237 1.15906 1.05399 1.22390 1.00355 0.96781 0.92768 1.22114 0.92832 0.93573 0.98533 1.21603 1.02018 0.97507 0.93407 0.93363 0.93023 0.94022 0.92630 0.84945 0.92603 0.95654 0.91502 0.92346 0.91432 0.92099 0.91822 0.94907 0.90475 0.90535 0.91025 0.95489 0.94883 0.89779 0.90376 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.66 9.16 71.98 0.66 -6.00 16 2 C 0.18 8.50 2.23 44.17 0.10 8.59 16 3 H 0.03 1.54 4.95 -2.39 -0.01 1.53 16 4 C -0.50 -29.01 9.19 25.60 0.24 -28.77 16 5 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 6 C 0.01 0.46 5.47 84.66 0.46 0.92 16 7 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 8 Si 0.94 44.93 26.99 68.60 1.85 46.78 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.25 -10.77 6.82 99.48 0.68 -10.09 16 12 N -0.69 -28.24 6.23 -495.45 -3.09 -31.33 16 13 C 0.06 1.89 5.25 86.30 0.45 2.34 16 14 C -0.10 -2.60 4.95 30.59 0.15 -2.44 16 15 C -0.08 -1.73 2.25 -10.71 -0.02 -1.75 16 16 C -0.11 -2.57 5.08 30.65 0.16 -2.42 16 17 C 0.06 1.15 5.46 86.33 0.47 1.62 16 18 N -0.56 -10.56 4.91 -922.58 -4.53 -15.09 16 19 C 0.02 0.36 9.59 127.69 1.22 1.58 16 20 C 0.06 0.97 5.46 86.32 0.47 1.44 16 21 C -0.11 -2.00 5.38 30.64 0.16 -1.84 16 22 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.05 1.77 7.35 -2.38 -0.02 1.75 16 24 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 26 H 0.33 12.70 8.48 -89.69 -0.76 11.94 16 27 H 0.06 1.90 6.55 -2.38 -0.02 1.89 16 28 H 0.03 0.77 7.36 -2.39 -0.02 0.75 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.51 6.71 -2.39 -0.02 1.50 16 34 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 38 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 1.23 8.12 -2.38 -0.02 1.21 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.82 322.37 -0.77 -66.60 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.17 Total: 20.08 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 4.52 Total: -26.72 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -7.32 Total: -106.74 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.85 Total: 46.78 kcal Total: -65.82 -0.77 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068615369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.203 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds