Wall clock time and date at job start Mon Mar 30 2020 03:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47685 * 2 1 4 4 N 1.46904 * 109.46881 * 239.99986 * 2 1 3 5 5 C 1.52999 * 109.47073 * 120.00668 * 2 1 3 6 6 H 1.08997 * 109.50727 * 60.07151 * 5 2 1 7 7 C 1.53127 * 109.49906 * 299.99660 * 5 2 1 8 8 C 1.53117 * 109.15989 * 182.36450 * 7 5 2 9 9 C 1.53044 * 109.27792 * 57.65607 * 8 7 5 10 10 N 1.46847 * 109.51335 * 300.82256 * 9 8 7 11 11 C 1.46901 * 111.00144 * 185.83239 * 10 9 8 12 12 C 1.53002 * 109.47055 * 66.04768 * 11 10 9 13 13 C 1.52994 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47139 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99983 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99952 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99955 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99926 * 359.97438 * 16 14 13 19 19 H 1.48511 * 109.46845 * 90.00316 * 18 16 14 20 20 H 1.48496 * 109.47217 * 209.99736 * 18 16 14 21 21 H 1.48492 * 109.47670 * 330.00241 * 18 16 14 22 22 C 1.46830 * 111.21086 * 61.74856 * 10 9 8 23 23 H 1.09000 * 109.46366 * 59.99482 * 1 2 3 24 24 H 1.08998 * 109.47243 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46606 * 300.00381 * 1 2 3 26 26 H 1.00903 * 111.00301 * 296.04412 * 4 2 1 27 27 H 1.00896 * 110.99951 * 60.00865 * 4 2 1 28 28 H 1.08997 * 109.52581 * 62.46084 * 7 5 2 29 29 H 1.08998 * 109.57452 * 302.29866 * 7 5 2 30 30 H 1.09001 * 109.50874 * 297.71787 * 8 7 5 31 31 H 1.09002 * 109.53469 * 177.60908 * 8 7 5 32 32 H 1.09002 * 109.46396 * 60.83566 * 9 8 7 33 33 H 1.08994 * 109.46485 * 180.81491 * 9 8 7 34 34 H 1.08999 * 109.47329 * 186.04739 * 11 10 9 35 35 H 1.08996 * 109.46902 * 306.05049 * 11 10 9 36 36 H 1.08999 * 109.47028 * 300.00156 * 12 11 10 37 37 H 1.09006 * 109.47128 * 59.99807 * 12 11 10 38 38 H 1.08999 * 109.47245 * 300.00054 * 13 12 11 39 39 H 1.08996 * 109.47225 * 59.99955 * 13 12 11 40 40 H 0.97003 * 120.00453 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.46742 * 178.23410 * 22 10 9 42 42 H 1.09004 * 109.45381 * 58.25744 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7214 1.2491 6 1 1.6780 -1.7495 1.2490 7 6 1.5300 -0.0001 2.4999 8 6 2.0928 -0.6928 3.7441 9 6 3.6217 -0.6907 3.6755 10 7 4.0592 -1.3927 2.4622 11 6 5.5214 -1.5313 2.4325 12 6 5.9694 -2.4536 3.5681 13 6 7.4922 -2.5985 3.5368 14 6 7.9335 -3.5064 4.6558 15 1 7.2010 -3.9373 5.3223 16 6 9.2722 -3.7878 4.8280 17 7 9.6573 -4.5805 5.8041 18 14 10.5388 -3.0442 3.6739 19 1 10.9980 -1.7403 4.2167 20 1 11.6975 -3.9648 3.5511 21 1 9.9281 -2.8360 2.3364 22 6 3.5704 -0.7185 1.2529 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 1.7502 -1.6649 -1.1910 27 1 1.6962 -0.2349 -2.0385 28 1 0.4409 -0.0376 2.5235 29 1 1.8584 1.0390 2.4817 30 1 1.7318 -1.7206 3.7832 31 1 1.7679 -0.1587 4.6370 32 1 3.9827 0.3375 3.6505 33 1 4.0253 -1.1960 4.5529 34 1 5.8267 -1.9572 1.4767 35 1 5.9818 -0.5513 2.5573 36 1 5.6641 -2.0277 4.5239 37 1 5.5089 -3.4337 3.4434 38 1 7.7970 -3.0246 2.5810 39 1 7.9530 -1.6186 3.6613 40 1 10.5991 -4.7782 5.9256 41 1 3.9367 -1.2438 0.3709 42 1 3.9316 0.3098 1.2394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069626888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:06 Heat of formation + Delta-G solvation = -26.131919 kcal Electronic energy + Delta-G solvation = -17651.245772 eV Core-core repulsion = 15050.724444 eV Total energy + Delta-G solvation = -2600.521329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.41897 -36.56357 -34.24862 -32.74041 -31.12350 -30.30094 -28.72667 -26.84138 -24.36308 -23.18884 -22.00346 -20.62917 -19.75734 -19.67544 -16.72666 -16.31141 -15.42519 -14.99473 -14.82064 -14.55517 -14.21789 -13.96336 -13.55722 -13.41565 -13.20822 -12.85756 -12.59960 -12.38455 -11.86592 -11.77272 -11.58542 -11.40215 -10.96116 -10.92421 -10.73347 -10.60340 -10.35413 -10.21427 -9.85462 -9.57045 -9.45910 -9.09418 -8.88191 -8.47730 -7.97714 -5.98329 -3.95565 3.35091 3.42222 3.47089 4.10122 4.26559 4.50903 4.66638 4.77291 4.91094 4.98642 5.07137 5.13696 5.35788 5.38692 5.48651 5.57861 5.58478 5.69147 5.69918 5.76444 5.79948 5.81987 5.93524 6.00114 6.15386 6.20544 6.28310 6.29812 6.41327 6.65475 6.68986 6.93396 7.00648 7.21623 7.38293 7.43501 7.50316 7.56288 7.87332 8.61729 9.07552 9.64693 11.15341 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041680 B = 0.004292 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.618958 B = 6522.846313 C = 6965.505406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.077 0.923 4 N -0.843 5.843 5 C -0.075 4.075 6 H 0.076 0.924 7 C -0.116 4.116 8 C -0.115 4.115 9 C 0.051 3.949 10 N -0.540 5.540 11 C 0.056 3.944 12 C -0.097 4.097 13 C -0.014 4.014 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.070 3.930 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.341 0.659 27 H 0.338 0.662 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.008 0.992 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.690 10.831 -11.446 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.021 4.021 3 H 0.095 0.905 4 N -0.372 5.372 5 C -0.095 4.095 6 H 0.094 0.906 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.077 4.077 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.135 4.135 13 C -0.052 4.052 14 C -0.555 4.555 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.058 4.058 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -17.987 10.467 -11.095 23.584 hybrid contribution 0.094 1.029 -0.721 1.260 sum -17.893 11.496 -11.817 24.330 Atomic orbital electron populations 1.22679 0.97886 1.02019 1.02106 1.21466 0.91821 0.98353 0.90461 0.90489 1.58871 1.67431 1.06887 1.03981 1.21186 0.95792 0.99719 0.92768 0.90585 1.21672 0.99907 0.99126 0.94677 1.21573 0.95386 1.01301 0.97074 1.22141 0.95058 0.96291 0.94242 1.61945 1.12208 1.50630 1.01607 1.22270 0.85319 0.98680 1.00897 1.21474 0.97810 0.98420 0.95775 1.19557 0.91777 0.96424 0.97416 1.21164 0.93214 1.27891 1.13192 0.91058 1.25042 0.98568 0.94829 0.95191 1.69920 1.16171 1.37009 1.31435 0.86768 0.81107 0.79098 0.82254 1.20408 1.21444 1.18985 1.21979 0.93874 0.96600 0.93371 0.93007 0.92636 0.91736 0.84635 0.84982 0.91973 0.92444 0.91150 0.91817 0.95523 0.89956 0.91267 0.95628 0.92963 0.92045 0.96637 0.97363 0.92832 0.89831 0.95846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 9.13 37.16 0.34 -0.98 16 2 C 0.09 0.78 2.95 -67.71 -0.20 0.58 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 N -0.84 -6.99 8.52 -4.66 -0.04 -7.03 16 5 C -0.08 -0.79 2.06 -90.54 -0.19 -0.98 16 6 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 7 C -0.12 -1.14 4.86 -26.61 -0.13 -1.27 16 8 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 9 C 0.05 0.71 5.29 -3.83 -0.02 0.69 16 10 N -0.54 -8.27 4.65 -234.68 -1.09 -9.36 16 11 C 0.06 0.98 4.96 -3.82 -0.02 0.96 16 12 C -0.10 -2.02 5.09 -26.73 -0.14 -2.16 16 13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 14 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 18 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 22 C 0.07 0.92 4.58 -3.84 -0.02 0.90 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.45 6.49 -51.93 -0.34 0.11 16 26 H 0.34 2.65 8.98 -39.29 -0.35 2.30 16 27 H 0.34 2.24 9.04 -39.29 -0.36 1.88 16 28 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 1.26 6.22 -51.93 -0.32 0.94 16 34 H 0.07 1.20 7.98 -51.93 -0.41 0.79 16 35 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 36 H 0.05 1.09 6.44 -51.93 -0.33 0.75 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.08 1.16 7.51 -51.93 -0.39 0.77 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -31.02 319.36 -9.14 -40.16 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.85 Total: -0.51 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.07 Total: -17.89 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.36 Total: -44.22 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.02 -9.14 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069626888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.027 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds