Wall clock time and date at job start Mon Mar 30 2020 03:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47685 * 2 1 4 4 N 1.46904 * 109.46881 * 239.99986 * 2 1 3 5 5 C 1.52999 * 109.47073 * 120.00668 * 2 1 3 6 6 H 1.08997 * 109.50727 * 60.07151 * 5 2 1 7 7 C 1.53127 * 109.49906 * 299.99660 * 5 2 1 8 8 C 1.53117 * 109.15989 * 182.36450 * 7 5 2 9 9 C 1.53044 * 109.27792 * 57.65607 * 8 7 5 10 10 N 1.46847 * 109.51335 * 300.82256 * 9 8 7 11 11 C 1.46901 * 111.00144 * 185.83239 * 10 9 8 12 12 C 1.53002 * 109.47055 * 66.04768 * 11 10 9 13 13 C 1.52994 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47139 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99983 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99952 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99955 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99926 * 359.97438 * 16 14 13 19 19 H 1.48511 * 109.46845 * 90.00316 * 18 16 14 20 20 H 1.48496 * 109.47217 * 209.99736 * 18 16 14 21 21 H 1.48492 * 109.47670 * 330.00241 * 18 16 14 22 22 C 1.46830 * 111.21086 * 61.74856 * 10 9 8 23 23 H 1.09000 * 109.46366 * 59.99482 * 1 2 3 24 24 H 1.08998 * 109.47243 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46606 * 300.00381 * 1 2 3 26 26 H 1.00903 * 111.00301 * 296.04412 * 4 2 1 27 27 H 1.00896 * 110.99951 * 60.00865 * 4 2 1 28 28 H 1.08997 * 109.52581 * 62.46084 * 7 5 2 29 29 H 1.08998 * 109.57452 * 302.29866 * 7 5 2 30 30 H 1.09001 * 109.50874 * 297.71787 * 8 7 5 31 31 H 1.09002 * 109.53469 * 177.60908 * 8 7 5 32 32 H 1.09002 * 109.46396 * 60.83566 * 9 8 7 33 33 H 1.08994 * 109.46485 * 180.81491 * 9 8 7 34 34 H 1.08999 * 109.47329 * 186.04739 * 11 10 9 35 35 H 1.08996 * 109.46902 * 306.05049 * 11 10 9 36 36 H 1.08999 * 109.47028 * 300.00156 * 12 11 10 37 37 H 1.09006 * 109.47128 * 59.99807 * 12 11 10 38 38 H 1.08999 * 109.47245 * 300.00054 * 13 12 11 39 39 H 1.08996 * 109.47225 * 59.99955 * 13 12 11 40 40 H 0.97003 * 120.00453 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.46742 * 178.23410 * 22 10 9 42 42 H 1.09004 * 109.45381 * 58.25744 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7214 1.2491 6 1 1.6780 -1.7495 1.2490 7 6 1.5300 -0.0001 2.4999 8 6 2.0928 -0.6928 3.7441 9 6 3.6217 -0.6907 3.6755 10 7 4.0592 -1.3927 2.4622 11 6 5.5214 -1.5313 2.4325 12 6 5.9694 -2.4536 3.5681 13 6 7.4922 -2.5985 3.5368 14 6 7.9335 -3.5064 4.6558 15 1 7.2010 -3.9373 5.3223 16 6 9.2722 -3.7878 4.8280 17 7 9.6573 -4.5805 5.8041 18 14 10.5388 -3.0442 3.6739 19 1 10.9980 -1.7403 4.2167 20 1 11.6975 -3.9648 3.5511 21 1 9.9281 -2.8360 2.3364 22 6 3.5704 -0.7185 1.2529 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 1.7502 -1.6649 -1.1910 27 1 1.6962 -0.2349 -2.0385 28 1 0.4409 -0.0376 2.5235 29 1 1.8584 1.0390 2.4817 30 1 1.7318 -1.7206 3.7832 31 1 1.7679 -0.1587 4.6370 32 1 3.9827 0.3375 3.6505 33 1 4.0253 -1.1960 4.5529 34 1 5.8267 -1.9572 1.4767 35 1 5.9818 -0.5513 2.5573 36 1 5.6641 -2.0277 4.5239 37 1 5.5089 -3.4337 3.4434 38 1 7.7970 -3.0246 2.5810 39 1 7.9530 -1.6186 3.6613 40 1 10.5991 -4.7782 5.9256 41 1 3.9367 -1.2438 0.3709 42 1 3.9316 0.3098 1.2394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069626888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:06 Heat of formation + Delta-G solvation = -47.880474 kcal Electronic energy + Delta-G solvation = -17652.188860 eV Core-core repulsion = 15050.724444 eV Total energy + Delta-G solvation = -2601.464417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41560 -37.58035 -35.82752 -34.39840 -32.80611 -31.23308 -29.57074 -28.43277 -25.62183 -24.34476 -23.32016 -21.98660 -21.06670 -20.67777 -18.88437 -17.26654 -16.53992 -16.32635 -16.09863 -15.68426 -15.54770 -15.06973 -14.82472 -14.73216 -14.20468 -13.95602 -13.94839 -13.52378 -13.47361 -13.11624 -12.70808 -12.49854 -12.39181 -12.35162 -11.87758 -11.80564 -11.69455 -11.51840 -11.39530 -11.36479 -11.12511 -10.92361 -10.75605 -9.50608 -9.19923 -8.29304 -6.33549 1.35651 1.38038 1.50662 2.36780 2.96705 3.05757 3.59359 3.83292 3.95045 4.05738 4.12800 4.21437 4.30046 4.37421 4.45528 4.49736 4.63258 4.68423 4.69520 4.78039 4.81861 4.93340 4.96083 4.98445 5.03998 5.05037 5.10293 5.14460 5.23077 5.28847 5.41831 5.51138 5.55814 5.60700 5.66519 6.18425 6.30020 6.31219 6.33954 6.67700 6.74370 7.30951 8.87800 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041680 B = 0.004292 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.618958 B = 6522.846313 C = 6965.505406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.097 3.903 3 H 0.074 0.926 4 N -0.853 5.853 5 C -0.070 4.070 6 H 0.068 0.932 7 C -0.111 4.111 8 C -0.112 4.112 9 C 0.048 3.952 10 N -0.548 5.548 11 C 0.066 3.934 12 C -0.086 4.086 13 C -0.010 4.010 14 C -0.533 4.533 15 H 0.029 0.971 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.246 1.246 22 C 0.073 3.927 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.343 0.657 27 H 0.348 0.652 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.267 0.733 41 H 0.076 0.924 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.499 12.613 -13.390 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.015 4.015 3 H 0.092 0.908 4 N -0.383 5.383 5 C -0.089 4.089 6 H 0.086 0.914 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.080 4.080 10 N -0.273 5.273 11 C -0.062 4.062 12 C -0.124 4.124 13 C -0.048 4.048 14 C -0.571 4.571 15 H 0.047 0.953 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.170 1.170 22 C -0.055 4.055 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -18.828 12.259 -13.050 25.982 hybrid contribution 0.300 0.414 -0.037 0.513 sum -18.527 12.673 -13.088 25.984 Atomic orbital electron populations 1.22604 0.96393 1.02236 1.02821 1.21357 0.92874 0.97696 0.89581 0.90826 1.58850 1.67837 1.07226 1.04420 1.21140 0.93699 0.99747 0.94302 0.91401 1.21654 1.01045 0.98894 0.93289 1.21559 0.93164 1.01437 0.98784 1.22188 0.97099 0.95797 0.92935 1.61918 1.10602 1.51750 1.03004 1.22028 0.87109 0.97762 0.99258 1.21282 0.95352 0.98633 0.97159 1.19492 0.94260 0.95474 0.95531 1.21500 0.92873 1.28687 1.14042 0.95279 1.26064 1.01106 0.95221 0.97065 1.70075 1.17033 1.38674 1.33583 0.85603 0.77853 0.78490 0.80374 1.19084 1.20775 1.16996 1.21996 0.95763 0.95860 0.91838 0.92016 0.92645 0.91323 0.84356 0.83862 0.89937 0.92004 0.91874 0.90224 0.95376 0.91941 0.90925 0.95366 0.93575 0.93437 0.96139 0.96506 0.92462 0.90606 0.96122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.13 71.98 0.66 -1.39 16 2 C 0.10 1.44 2.95 44.91 0.13 1.57 16 3 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 4 N -0.85 -12.52 8.52 -168.67 -1.44 -13.96 16 5 C -0.07 -1.33 2.06 -10.74 -0.02 -1.35 16 6 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 7 C -0.11 -1.92 4.86 30.68 0.15 -1.77 16 8 C -0.11 -2.36 6.09 30.65 0.19 -2.18 16 9 C 0.05 1.31 5.29 86.33 0.46 1.77 16 10 N -0.55 -16.40 4.65 -896.40 -4.17 -20.57 16 11 C 0.07 2.27 4.96 86.30 0.43 2.70 16 12 C -0.09 -3.63 5.09 30.59 0.16 -3.48 16 13 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 14 C -0.53 -32.17 9.66 25.60 0.25 -31.92 16 15 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 16 C 0.00 0.11 5.47 84.66 0.46 0.57 16 17 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 18 Si 0.95 45.55 27.47 68.60 1.88 47.44 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 22 C 0.07 1.82 4.58 86.33 0.39 2.21 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.73 6.49 -2.39 -0.02 0.71 16 26 H 0.34 4.76 8.98 -89.69 -0.81 3.96 16 27 H 0.35 3.88 9.04 -89.70 -0.81 3.07 16 28 H 0.08 1.13 6.57 -2.39 -0.02 1.12 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.95 6.22 -2.39 -0.01 1.93 16 34 H 0.07 2.43 7.98 -2.39 -0.02 2.42 16 35 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 36 H 0.05 1.97 6.44 -2.39 -0.02 1.95 16 37 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 39 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 40 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 41 H 0.08 2.01 7.51 -2.39 -0.02 1.99 16 42 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -67.41 319.36 -0.75 -68.16 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.69 Total: 13.74 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.37 Total: -33.60 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -5.31 Total: -95.73 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.44 kcal Total: -67.41 -0.75 -68.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069626888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.277 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds