Wall clock time and date at job start Mon Mar 30 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 N 1.46898 * 109.47226 * 119.99802 * 2 1 3 5 5 C 1.52999 * 109.47119 * 239.99952 * 2 1 3 6 6 H 1.08997 * 109.53707 * 60.09407 * 5 2 1 7 7 C 1.53126 * 109.50168 * 299.99811 * 5 2 1 8 8 C 1.53114 * 109.16071 * 182.40725 * 7 5 2 9 9 C 1.53035 * 109.28189 * 57.65474 * 8 7 5 10 10 N 1.46848 * 109.52142 * 300.82150 * 9 8 7 11 11 C 1.46906 * 111.00135 * 185.83611 * 10 9 8 12 12 C 1.53000 * 109.46519 * 66.04575 * 11 10 9 13 13 C 1.53009 * 109.46551 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46792 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00703 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99909 * 179.97438 * 14 13 12 17 17 N 1.31505 * 119.99958 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99896 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47041 * 90.00477 * 18 16 14 20 20 H 1.48504 * 109.47093 * 210.00328 * 18 16 14 21 21 H 1.48502 * 109.47454 * 330.00172 * 18 16 14 22 22 C 1.46847 * 111.19788 * 61.74047 * 10 9 8 23 23 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47135 * 300.00069 * 1 2 3 25 25 H 1.09001 * 109.47069 * 60.00078 * 1 2 3 26 26 H 1.00906 * 111.00217 * 296.04599 * 4 2 1 27 27 H 1.00903 * 111.00324 * 59.99615 * 4 2 1 28 28 H 1.09001 * 109.52438 * 302.31069 * 7 5 2 29 29 H 1.09004 * 109.51760 * 62.49971 * 7 5 2 30 30 H 1.08994 * 109.50522 * 177.59764 * 8 7 5 31 31 H 1.09010 * 109.49966 * 297.67525 * 8 7 5 32 32 H 1.09000 * 109.45907 * 60.83499 * 9 8 7 33 33 H 1.08999 * 109.46252 * 180.82076 * 9 8 7 34 34 H 1.08999 * 109.47311 * 186.04831 * 11 10 9 35 35 H 1.09005 * 109.46943 * 306.05014 * 11 10 9 36 36 H 1.08999 * 109.47538 * 300.00117 * 12 11 10 37 37 H 1.08999 * 109.47479 * 60.00857 * 12 11 10 38 38 H 1.08999 * 109.47206 * 300.00211 * 13 12 11 39 39 H 1.09005 * 109.47016 * 60.00375 * 13 12 11 40 40 H 0.97003 * 120.00445 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.46634 * 178.23927 * 22 10 9 42 42 H 1.09006 * 109.46422 * 58.27823 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0400 -0.7213 -1.2492 6 1 1.6786 -0.2073 -2.1399 7 6 1.5300 -2.1651 -1.2499 8 6 2.0937 -2.8966 -2.4712 9 6 3.6224 -2.8383 -2.4341 10 7 4.0602 -1.4366 -2.4356 11 6 5.5225 -1.3418 -2.5399 12 6 5.9711 -1.8648 -3.9060 13 6 7.4942 -1.7667 -4.0144 14 6 7.9361 -2.2812 -5.3602 15 1 7.2040 -2.6425 -6.0673 16 6 9.2751 -2.2908 -5.6888 17 7 10.1666 -1.8514 -4.8277 18 14 9.8229 -2.9292 -7.3567 19 1 9.8465 -1.8095 -8.3319 20 1 11.1833 -3.5133 -7.2407 21 1 8.8745 -3.9722 -7.8234 22 6 3.5703 -0.7261 -1.2475 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7503 -0.1989 2.0373 27 1 1.6961 -1.6479 1.2229 28 1 1.8587 -2.6680 -0.3404 29 1 0.4409 -2.1666 -1.2949 30 1 1.7687 -3.9368 -2.4544 31 1 1.7326 -2.4172 -3.3812 32 1 3.9828 -3.3304 -1.5307 33 1 4.0266 -3.3457 -3.3100 34 1 5.8279 -0.3012 -2.4310 35 1 5.9824 -1.9398 -1.7530 36 1 5.6657 -2.9055 -4.0149 37 1 5.5113 -1.2669 -4.6929 38 1 7.8000 -0.7262 -3.9053 39 1 7.9538 -2.3649 -3.2276 40 1 11.1087 -1.8584 -5.0587 41 1 3.9367 0.3004 -1.2613 42 1 3.9310 -1.2280 -0.3496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069626890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:08 Heat of formation + Delta-G solvation = -27.508552 kcal Electronic energy + Delta-G solvation = -17660.243389 eV Core-core repulsion = 15059.662365 eV Total energy + Delta-G solvation = -2600.581024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43730 -36.53016 -34.04069 -32.63444 -30.87126 -30.14390 -28.69906 -26.53214 -24.52233 -23.16504 -22.28725 -20.72038 -19.65026 -19.11446 -16.53581 -16.22759 -15.57201 -14.97121 -14.62105 -14.49157 -14.26405 -13.86023 -13.52173 -13.32461 -13.11389 -12.88934 -12.43346 -12.21322 -11.87279 -11.56200 -11.33624 -11.20161 -10.95559 -10.81490 -10.59197 -10.56559 -10.49588 -10.16205 -10.07215 -9.48144 -9.23877 -8.99246 -8.85629 -8.28146 -7.85762 -5.93585 -3.95318 3.36305 3.42039 3.45878 4.19708 4.38838 4.52099 4.65609 4.73571 4.96414 5.05597 5.12947 5.18569 5.42068 5.46612 5.57692 5.59522 5.63976 5.68495 5.81041 5.82774 5.88168 5.94638 6.00585 6.10565 6.23515 6.26230 6.32176 6.43963 6.49487 6.81950 6.90208 6.96892 7.22770 7.24000 7.55816 7.57986 7.76357 7.92398 8.07722 8.51367 9.12080 9.68239 11.17940 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052835 B = 0.003938 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.825297 B = 7108.287616 C = 7387.108367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.080 0.920 4 N -0.842 5.842 5 C -0.075 4.075 6 H 0.078 0.922 7 C -0.117 4.117 8 C -0.115 4.115 9 C 0.053 3.947 10 N -0.542 5.542 11 C 0.058 3.942 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.068 3.932 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.337 0.663 27 H 0.338 0.662 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.641 1.475 10.742 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.022 4.022 3 H 0.098 0.902 4 N -0.372 5.372 5 C -0.095 4.095 6 H 0.096 0.904 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.075 4.075 10 N -0.266 5.266 11 C -0.069 4.069 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.060 4.060 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.908 1.861 10.060 21.499 hybrid contribution -0.264 -0.779 0.081 0.827 sum -19.173 1.082 10.141 21.716 Atomic orbital electron populations 1.22669 0.97934 1.02044 1.02012 1.21442 0.91766 0.98264 0.90681 0.90188 1.58922 1.67506 1.06519 1.04242 1.21207 0.95922 0.95708 0.96629 0.90372 1.21676 0.99492 0.95729 0.98527 1.21569 0.95548 0.99686 0.98520 1.22096 0.94843 0.89659 1.00888 1.61983 1.12438 1.12971 1.39230 1.22240 0.84957 1.00852 0.98838 1.21651 0.99339 0.99291 0.93933 1.19080 0.88706 0.97099 0.96758 1.21268 0.92032 1.41423 1.00797 0.92713 1.25030 0.96909 0.95604 0.97019 1.69967 1.01334 1.47344 1.35015 0.86605 0.77871 0.79108 0.84480 1.20686 1.21299 1.19900 1.21959 0.93726 0.98766 0.91573 0.92398 0.93056 0.92008 0.85078 0.84791 0.92167 0.92340 0.92028 0.91292 0.95463 0.90173 0.91410 0.95524 0.93554 0.92716 0.96641 0.96855 0.93091 0.91565 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.13 37.16 0.34 -1.02 16 2 C 0.09 0.80 3.18 -67.71 -0.22 0.59 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 N -0.84 -7.14 8.38 -4.67 -0.04 -7.18 16 5 C -0.08 -0.82 2.23 -90.54 -0.20 -1.02 16 6 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 7 C -0.12 -1.18 4.58 -26.61 -0.12 -1.30 16 8 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 9 C 0.05 0.78 5.29 -3.83 -0.02 0.76 16 10 N -0.54 -8.67 4.65 -234.66 -1.09 -9.77 16 11 C 0.06 1.09 4.96 -3.82 -0.02 1.07 16 12 C -0.10 -2.27 5.09 -26.73 -0.14 -2.41 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 15 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.62 13.28 55.43 0.74 -26.89 16 18 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.07 0.93 4.60 -3.84 -0.02 0.91 16 23 H 0.06 0.41 6.49 -51.93 -0.34 0.07 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.34 2.30 9.07 -39.29 -0.36 1.95 16 27 H 0.34 2.68 7.12 -39.29 -0.28 2.40 16 28 H 0.06 0.61 6.56 -51.93 -0.34 0.26 16 29 H 0.06 0.52 6.58 -51.93 -0.34 0.17 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 1.27 6.22 -51.93 -0.32 0.95 16 34 H 0.07 1.27 7.98 -51.93 -0.41 0.85 16 35 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.05 0.99 6.44 -51.93 -0.33 0.66 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 0.93 8.01 -51.93 -0.42 0.52 16 42 H 0.04 0.64 7.57 -51.93 -0.39 0.25 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -30.59 319.50 -9.43 -40.03 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.73 Total: -0.73 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.10 Total: -17.41 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.40 Total: -43.83 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.59 -9.43 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069626890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.517 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds