Wall clock time and date at job start Mon Mar 30 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47472 * 2 1 4 4 N 1.46896 * 109.47327 * 239.99936 * 2 1 3 5 5 C 1.53002 * 109.47289 * 119.99808 * 2 1 3 6 6 H 1.09002 * 109.50270 * 305.00099 * 5 2 1 7 7 C 1.53123 * 109.50117 * 65.07848 * 5 2 1 8 8 C 1.53203 * 109.11533 * 177.59478 * 7 5 2 9 9 C 1.53030 * 109.30370 * 302.37368 * 8 7 5 10 10 N 1.46846 * 109.52435 * 59.17688 * 9 8 7 11 11 C 1.46902 * 111.00121 * 174.16395 * 10 9 8 12 12 C 1.52995 * 109.46851 * 294.21235 * 11 10 9 13 13 C 1.53008 * 109.46949 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46919 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00389 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99941 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99549 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00015 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47541 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46930 * 119.99654 * 18 16 14 21 21 H 1.48498 * 109.47285 * 239.99697 * 18 16 14 22 22 C 1.46856 * 111.19871 * 298.25760 * 10 9 8 23 23 H 1.08996 * 109.47205 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47287 * 300.00040 * 1 2 3 25 25 H 1.09000 * 109.47463 * 59.99876 * 1 2 3 26 26 H 1.00899 * 111.00224 * 296.04613 * 4 2 1 27 27 H 1.00900 * 110.99888 * 60.00016 * 4 2 1 28 28 H 1.08994 * 109.52349 * 297.54115 * 7 5 2 29 29 H 1.08997 * 109.52263 * 57.73077 * 7 5 2 30 30 H 1.08997 * 109.49417 * 182.41991 * 8 7 5 31 31 H 1.09005 * 109.49195 * 62.32110 * 8 7 5 32 32 H 1.09004 * 109.46094 * 299.16423 * 9 8 7 33 33 H 1.08997 * 109.46013 * 179.19203 * 9 8 7 34 34 H 1.08998 * 109.46964 * 54.20591 * 11 10 9 35 35 H 1.08994 * 109.46972 * 174.21048 * 11 10 9 36 36 H 1.08997 * 109.47329 * 299.99477 * 12 11 10 37 37 H 1.08994 * 109.47485 * 60.00128 * 12 11 10 38 38 H 1.08998 * 109.46832 * 299.99335 * 13 12 11 39 39 H 1.08994 * 109.47005 * 59.99733 * 13 12 11 40 40 H 0.96995 * 119.99688 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.46462 * 301.73144 * 22 10 9 42 42 H 1.09001 * 109.45242 * 181.75123 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 1 1.6057 -0.2621 2.1373 7 6 1.6370 -2.1972 1.1878 8 6 2.2032 -2.9233 2.4122 9 6 3.7237 -2.7536 2.4427 10 7 4.0570 -1.3246 2.5016 11 6 5.5028 -1.1278 2.6715 12 6 5.9334 -1.6642 4.0381 13 6 7.4392 -1.4586 4.2153 14 6 7.8634 -1.9876 5.5612 15 1 7.1321 -2.4261 6.2240 16 6 9.1849 -1.9107 5.9468 17 7 10.0753 -1.3762 5.1398 18 14 9.7106 -2.5657 7.6153 19 1 8.5278 -3.1123 8.3276 20 1 10.7179 -3.6410 7.4299 21 1 10.3040 -1.4642 8.4150 22 6 3.5654 -0.6153 1.3133 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 1.7503 -1.6648 -1.1909 27 1 1.6962 -0.2349 -2.0385 28 1 0.5501 -2.2782 1.1853 29 1 2.0387 -2.6469 0.2798 30 1 1.9564 -3.9833 2.3529 31 1 1.7714 -2.4988 3.3187 32 1 4.1560 -3.1905 1.5425 33 1 4.1278 -3.2572 3.3209 34 1 6.0370 -1.6629 1.8864 35 1 5.7345 -0.0646 2.6090 36 1 5.3992 -1.1292 4.8232 37 1 5.7017 -2.7274 4.1005 38 1 7.9737 -1.9934 3.4303 39 1 7.6705 -0.3953 4.1530 40 1 11.0050 -1.3225 5.4109 41 1 3.9984 -1.0624 0.4185 42 1 3.8545 0.4340 1.3715 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069626893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:10 Heat of formation + Delta-G solvation = -27.246791 kcal Electronic energy + Delta-G solvation = -17654.825583 eV Core-core repulsion = 15054.255910 eV Total energy + Delta-G solvation = -2600.569673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.44849 -36.54335 -34.04073 -32.62814 -30.88234 -30.14162 -28.71503 -26.55273 -24.51772 -23.17839 -22.30172 -20.71841 -19.65325 -19.14267 -16.53085 -16.21798 -15.57625 -14.97471 -14.63621 -14.53961 -14.27725 -13.87377 -13.50890 -13.29149 -13.08380 -12.91548 -12.46979 -12.22147 -11.87156 -11.56397 -11.35848 -11.20523 -10.96007 -10.83548 -10.58370 -10.57560 -10.49638 -10.16151 -10.08865 -9.49040 -9.24555 -8.98288 -8.85661 -8.28772 -7.87412 -5.94082 -3.95726 3.34948 3.42094 3.46883 4.18620 4.38961 4.51826 4.65577 4.72153 4.94908 5.05467 5.11933 5.18336 5.41666 5.46375 5.56969 5.58823 5.62691 5.68471 5.80368 5.81841 5.86974 5.94076 5.99494 6.09501 6.22013 6.24840 6.31224 6.43192 6.47999 6.81305 6.89437 6.97092 7.22316 7.23831 7.54599 7.56711 7.76182 7.91885 8.07344 8.50949 9.11913 9.67915 11.17490 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052868 B = 0.003928 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.489494 B = 7126.156614 C = 7392.269055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.080 0.920 4 N -0.843 5.843 5 C -0.076 4.076 6 H 0.078 0.922 7 C -0.117 4.117 8 C -0.115 4.115 9 C 0.053 3.947 10 N -0.541 5.541 11 C 0.058 3.942 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.516 4.516 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.067 3.933 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.339 0.661 27 H 0.337 0.663 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.042 0.958 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.294 0.399 -11.379 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.022 4.022 3 H 0.099 0.901 4 N -0.373 5.373 5 C -0.095 4.095 6 H 0.097 0.903 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.075 4.075 10 N -0.266 5.266 11 C -0.069 4.069 12 C -0.142 4.142 13 C -0.017 4.017 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.061 4.061 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.153 0.847 27 H 0.149 0.851 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.601 0.822 -10.714 21.481 hybrid contribution -0.208 -0.791 -0.043 0.819 sum -18.808 0.031 -10.757 21.667 Atomic orbital electron populations 1.22658 0.97930 1.01984 1.02054 1.21449 0.91753 0.98384 0.90582 0.90146 1.58952 1.67512 1.06842 1.04030 1.21217 0.96180 0.95472 0.96644 0.90323 1.21683 0.99714 0.95513 0.98582 1.21581 0.95740 0.99523 0.98454 1.22099 0.95210 0.89334 1.00864 1.61986 1.15712 1.10343 1.38530 1.22241 0.85112 1.00825 0.98731 1.21650 0.99468 0.99255 0.93846 1.19085 0.88886 0.97041 0.96670 1.21306 0.93311 1.38933 1.01883 0.92655 1.25038 0.96855 0.95528 0.97186 1.69984 1.02178 1.45297 1.36196 0.86548 0.78565 0.78614 0.84353 1.19737 1.21089 1.21055 1.21983 0.93824 0.98716 0.91607 0.92515 0.91999 0.92998 0.84695 0.85097 0.92390 0.91993 0.91996 0.91286 0.95438 0.90136 0.95513 0.91396 0.92710 0.93538 0.96853 0.96624 0.93150 0.93931 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 9.24 37.16 0.34 -1.02 16 2 C 0.09 0.80 3.13 -67.72 -0.21 0.59 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 N -0.84 -7.18 8.61 -4.67 -0.04 -7.22 16 5 C -0.08 -0.82 2.17 -90.54 -0.20 -1.02 16 6 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 7 C -0.12 -1.18 4.60 -26.56 -0.12 -1.30 16 8 C -0.12 -1.34 6.09 -26.61 -0.16 -1.51 16 9 C 0.05 0.77 5.29 -3.84 -0.02 0.75 16 10 N -0.54 -8.64 4.66 -234.67 -1.09 -9.73 16 11 C 0.06 1.08 4.96 -3.83 -0.02 1.06 16 12 C -0.10 -2.27 5.08 -26.73 -0.14 -2.40 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 18 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.07 0.91 4.64 -3.83 -0.02 0.90 16 23 H 0.06 0.40 6.62 -51.93 -0.34 0.06 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.34 2.70 6.82 -39.29 -0.27 2.43 16 27 H 0.34 2.31 9.04 -39.29 -0.36 1.96 16 28 H 0.06 0.51 6.69 -51.93 -0.35 0.16 16 29 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 1.27 6.21 -51.93 -0.32 0.95 16 34 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.07 1.27 7.99 -51.93 -0.41 0.85 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 0.99 6.43 -51.93 -0.33 0.66 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.04 0.62 7.73 -51.93 -0.40 0.22 16 42 H 0.07 0.93 8.02 -51.93 -0.42 0.52 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -30.58 319.71 -9.42 -40.00 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.73 Total: -0.72 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.09 Total: -17.40 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.40 Total: -43.80 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.58 -9.42 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069626893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.750 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds