Wall clock time and date at job start Mon Mar 30 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47472 * 2 1 4 4 N 1.46896 * 109.47327 * 239.99936 * 2 1 3 5 5 C 1.53002 * 109.47289 * 119.99808 * 2 1 3 6 6 H 1.09002 * 109.50270 * 305.00099 * 5 2 1 7 7 C 1.53123 * 109.50117 * 65.07848 * 5 2 1 8 8 C 1.53203 * 109.11533 * 177.59478 * 7 5 2 9 9 C 1.53030 * 109.30370 * 302.37368 * 8 7 5 10 10 N 1.46846 * 109.52435 * 59.17688 * 9 8 7 11 11 C 1.46902 * 111.00121 * 174.16395 * 10 9 8 12 12 C 1.52995 * 109.46851 * 294.21235 * 11 10 9 13 13 C 1.53008 * 109.46949 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46919 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00389 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99941 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99549 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00015 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47541 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46930 * 119.99654 * 18 16 14 21 21 H 1.48498 * 109.47285 * 239.99697 * 18 16 14 22 22 C 1.46856 * 111.19871 * 298.25760 * 10 9 8 23 23 H 1.08996 * 109.47205 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47287 * 300.00040 * 1 2 3 25 25 H 1.09000 * 109.47463 * 59.99876 * 1 2 3 26 26 H 1.00899 * 111.00224 * 296.04613 * 4 2 1 27 27 H 1.00900 * 110.99888 * 60.00016 * 4 2 1 28 28 H 1.08994 * 109.52349 * 297.54115 * 7 5 2 29 29 H 1.08997 * 109.52263 * 57.73077 * 7 5 2 30 30 H 1.08997 * 109.49417 * 182.41991 * 8 7 5 31 31 H 1.09005 * 109.49195 * 62.32110 * 8 7 5 32 32 H 1.09004 * 109.46094 * 299.16423 * 9 8 7 33 33 H 1.08997 * 109.46013 * 179.19203 * 9 8 7 34 34 H 1.08998 * 109.46964 * 54.20591 * 11 10 9 35 35 H 1.08994 * 109.46972 * 174.21048 * 11 10 9 36 36 H 1.08997 * 109.47329 * 299.99477 * 12 11 10 37 37 H 1.08994 * 109.47485 * 60.00128 * 12 11 10 38 38 H 1.08998 * 109.46832 * 299.99335 * 13 12 11 39 39 H 1.08994 * 109.47005 * 59.99733 * 13 12 11 40 40 H 0.96995 * 119.99688 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.46462 * 301.73144 * 22 10 9 42 42 H 1.09001 * 109.45242 * 181.75123 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 1 1.6057 -0.2621 2.1373 7 6 1.6370 -2.1972 1.1878 8 6 2.2032 -2.9233 2.4122 9 6 3.7237 -2.7536 2.4427 10 7 4.0570 -1.3246 2.5016 11 6 5.5028 -1.1278 2.6715 12 6 5.9334 -1.6642 4.0381 13 6 7.4392 -1.4586 4.2153 14 6 7.8634 -1.9876 5.5612 15 1 7.1321 -2.4261 6.2240 16 6 9.1849 -1.9107 5.9468 17 7 10.0753 -1.3762 5.1398 18 14 9.7106 -2.5657 7.6153 19 1 8.5278 -3.1123 8.3276 20 1 10.7179 -3.6410 7.4299 21 1 10.3040 -1.4642 8.4150 22 6 3.5654 -0.6153 1.3133 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 1.7503 -1.6648 -1.1909 27 1 1.6962 -0.2349 -2.0385 28 1 0.5501 -2.2782 1.1853 29 1 2.0387 -2.6469 0.2798 30 1 1.9564 -3.9833 2.3529 31 1 1.7714 -2.4988 3.3187 32 1 4.1560 -3.1905 1.5425 33 1 4.1278 -3.2572 3.3209 34 1 6.0370 -1.6629 1.8864 35 1 5.7345 -0.0646 2.6090 36 1 5.3992 -1.1292 4.8232 37 1 5.7017 -2.7274 4.1005 38 1 7.9737 -1.9934 3.4303 39 1 7.6705 -0.3953 4.1530 40 1 11.0050 -1.3225 5.4109 41 1 3.9984 -1.0624 0.4185 42 1 3.8545 0.4340 1.3715 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069626893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:09 Heat of formation + Delta-G solvation = -47.816207 kcal Electronic energy + Delta-G solvation = -17655.717540 eV Core-core repulsion = 15054.255910 eV Total energy + Delta-G solvation = -2601.461630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48023 -37.64319 -35.78825 -34.22427 -32.49224 -31.17498 -29.44686 -28.32548 -25.86628 -24.47509 -23.61615 -22.14430 -21.13885 -20.05908 -18.48918 -17.23820 -16.77925 -16.45455 -16.28017 -15.71965 -15.37674 -14.97781 -14.85872 -14.39544 -14.09771 -13.92941 -13.83316 -13.55150 -13.39838 -13.04755 -12.66316 -12.58208 -12.47639 -12.26134 -12.18161 -11.96391 -11.63902 -11.47659 -11.34575 -11.28817 -10.99503 -10.87684 -10.55371 -9.53649 -9.17341 -8.20152 -6.31432 1.39862 1.40536 1.54319 2.41115 2.97897 3.12698 3.73851 3.79462 3.85060 4.04471 4.17715 4.20972 4.31323 4.39123 4.47267 4.53655 4.63684 4.71680 4.72213 4.76910 4.83182 4.99183 4.99755 5.01596 5.03951 5.11599 5.15382 5.20776 5.25366 5.27928 5.46126 5.51648 5.55553 5.73950 5.85419 6.14959 6.26888 6.30644 6.35738 6.67792 6.85344 7.37752 8.92196 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052868 B = 0.003928 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.489494 B = 7126.156614 C = 7392.269055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.096 3.904 3 H 0.073 0.927 4 N -0.853 5.853 5 C -0.071 4.071 6 H 0.073 0.927 7 C -0.111 4.111 8 C -0.110 4.110 9 C 0.050 3.950 10 N -0.545 5.545 11 C 0.069 3.931 12 C -0.087 4.087 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.068 3.932 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.343 0.657 27 H 0.347 0.653 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.018 0.982 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.049 0.951 38 H -0.011 1.011 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.034 0.966 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.106 -0.274 -11.193 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.016 4.016 3 H 0.091 0.909 4 N -0.385 5.385 5 C -0.090 4.090 6 H 0.092 0.908 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.078 4.078 10 N -0.269 5.269 11 C -0.059 4.059 12 C -0.125 4.125 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.059 4.059 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.160 0.840 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.007 0.993 39 H 0.010 0.990 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.439 0.150 -10.543 22.999 hybrid contribution 0.384 -0.562 -0.146 0.696 sum -20.055 -0.412 -10.690 22.730 Atomic orbital electron populations 1.22576 0.96263 1.02524 1.02558 1.21328 0.92929 0.97614 0.89765 0.90904 1.58916 1.67944 1.07255 1.04367 1.21178 0.93658 0.96568 0.97611 0.90824 1.21657 1.00990 0.94393 0.97844 1.21565 0.93101 1.00990 0.99139 1.22171 0.97608 0.88135 0.99914 1.61974 1.13372 1.11603 1.40000 1.21973 0.87258 1.00160 0.96527 1.21385 0.95896 0.99582 0.95648 1.18981 0.92029 0.94891 0.95332 1.21711 0.93980 1.39411 1.02859 0.92273 1.26023 0.96825 0.95542 1.01615 1.70114 1.02716 1.46203 1.38449 0.85356 0.78407 0.78118 0.78912 1.18572 1.20240 1.20249 1.22028 0.96007 0.97798 0.90080 0.91906 0.92046 0.91990 0.84210 0.83954 0.90151 0.91625 0.90157 0.91669 0.95768 0.91733 0.96329 0.91788 0.93032 0.93203 0.99295 0.99043 0.92747 0.94762 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.24 71.98 0.66 -1.49 16 2 C 0.10 1.52 3.13 44.92 0.14 1.66 16 3 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 4 N -0.85 -12.92 8.61 -168.68 -1.45 -14.37 16 5 C -0.07 -1.43 2.17 -10.74 -0.02 -1.45 16 6 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 7 C -0.11 -1.96 4.60 30.70 0.14 -1.82 16 8 C -0.11 -2.35 6.09 30.67 0.19 -2.17 16 9 C 0.05 1.42 5.29 86.32 0.46 1.88 16 10 N -0.55 -17.35 4.66 -896.36 -4.17 -21.52 16 11 C 0.07 2.63 4.96 86.30 0.43 3.05 16 12 C -0.09 -3.89 5.08 30.60 0.16 -3.73 16 13 C 0.03 1.41 4.97 29.85 0.15 1.56 16 14 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 17 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 18 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 C 0.07 1.85 4.64 86.32 0.40 2.25 16 23 H 0.06 0.69 6.62 -2.39 -0.02 0.67 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.34 4.68 6.82 -89.69 -0.61 4.07 16 27 H 0.35 4.08 9.04 -89.69 -0.81 3.26 16 28 H 0.08 1.12 6.69 -2.39 -0.02 1.10 16 29 H 0.07 1.14 6.40 -2.39 -0.02 1.13 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.06 2.04 6.21 -2.39 -0.01 2.02 16 34 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 35 H 0.06 2.47 7.99 -2.39 -0.02 2.45 16 36 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 2.17 6.43 -2.39 -0.02 2.15 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.03 0.99 7.73 -2.39 -0.02 0.97 16 42 H 0.06 1.68 8.02 -2.39 -0.02 1.66 16 Total: -1.00 -65.94 319.71 -0.36 -66.31 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -0.44 Total: 12.16 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 3.40 Total: -31.84 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -5.34 Total: -94.06 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -65.94 -0.36 -66.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069626893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.490 kcal (2) G-P(sol) polarization free energy of solvation -65.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds