Wall clock time and date at job start Mon Mar 30 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46909 * 2 1 4 4 N 1.46908 * 109.46860 * 119.99458 * 2 1 3 5 5 C 1.52992 * 109.47570 * 239.99732 * 2 1 3 6 6 H 1.09004 * 109.53352 * 300.09735 * 5 2 1 7 7 C 1.53120 * 109.50296 * 60.19621 * 5 2 1 8 8 C 1.53118 * 109.16026 * 177.59659 * 7 5 2 9 9 C 1.53048 * 109.27745 * 302.34502 * 8 7 5 10 10 N 1.46848 * 109.52064 * 59.17773 * 9 8 7 11 11 C 1.46901 * 110.99510 * 174.15537 * 10 9 8 12 12 C 1.52992 * 109.47859 * 294.21467 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 C 1.46844 * 111.20087 * 298.25789 * 10 9 8 23 23 H 1.09006 * 109.46909 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47370 * 299.99987 * 1 2 3 25 25 H 1.09004 * 109.47084 * 60.00762 * 1 2 3 26 26 H 1.00900 * 110.99995 * 300.00241 * 4 2 1 27 27 H 1.00890 * 110.99652 * 63.95773 * 4 2 1 28 28 H 1.08999 * 109.52255 * 297.49845 * 7 5 2 29 29 H 1.08999 * 109.52028 * 57.62959 * 7 5 2 30 30 H 1.08998 * 109.50497 * 62.28236 * 8 7 5 31 31 H 1.08994 * 109.50134 * 182.40729 * 8 7 5 32 32 H 1.08996 * 109.45875 * 299.16470 * 9 8 7 33 33 H 1.08994 * 109.45842 * 179.19707 * 9 8 7 34 34 H 1.09002 * 109.46980 * 174.21126 * 11 10 9 35 35 H 1.09001 * 109.46628 * 54.21548 * 11 10 9 36 36 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 37 37 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 38 38 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 39 39 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.46077 * 181.76172 * 22 10 9 42 42 H 1.08995 * 109.45945 * 301.73995 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0401 -0.7213 -1.2491 6 1 1.6759 -1.7487 -1.2510 7 6 1.5342 0.0028 -2.4999 8 6 2.0980 -0.6895 -3.7439 9 6 3.6268 -0.6907 -3.6722 10 7 4.0606 -1.3953 -2.4590 11 6 5.5224 -1.5372 -2.4269 12 6 5.9711 -2.4536 -3.5669 13 6 7.4936 -2.6009 -3.5338 14 6 7.9354 -3.5041 -4.6563 15 1 7.2036 -3.9302 -5.3265 16 6 9.2742 -3.7857 -4.8283 17 7 10.1654 -3.2664 -4.0124 18 14 9.8219 -4.9047 -6.2201 19 1 10.0923 -4.0908 -7.4323 20 1 11.0586 -5.6231 -5.8202 21 1 8.7504 -5.8898 -6.5141 22 6 3.5705 -0.7216 -1.2497 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 1.6961 -0.2348 2.0386 27 1 1.7502 -1.6647 1.1911 28 1 0.4451 -0.0324 -2.5256 29 1 1.8648 1.0412 -2.4784 30 1 1.7348 -1.7163 -3.7850 31 1 1.7760 -0.1529 -4.6362 32 1 3.9899 0.3366 -3.6450 33 1 4.0310 -1.1955 -4.5495 34 1 5.8246 -1.9693 -1.4729 35 1 5.9851 -0.5574 -2.5449 36 1 5.6688 -2.0216 -4.5208 37 1 5.5082 -3.4334 -3.4489 38 1 7.7962 -3.0327 -2.5798 39 1 7.9560 -1.6209 -3.6520 40 1 11.1072 -3.4648 -4.1332 41 1 3.9340 -1.2488 -0.3677 42 1 3.9337 0.3059 -1.2340 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069626894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:11 Heat of formation + Delta-G solvation = -29.703698 kcal Electronic energy + Delta-G solvation = -17603.461150 eV Core-core repulsion = 15002.784938 eV Total energy + Delta-G solvation = -2600.676213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.36041 -36.49128 -34.15515 -32.75636 -30.87086 -30.22804 -28.62745 -26.47258 -24.30868 -23.22071 -22.08430 -20.72278 -19.71676 -19.58437 -16.51514 -16.07105 -15.32318 -14.90789 -14.77655 -14.53361 -14.30747 -14.00039 -13.48158 -13.35812 -13.15055 -12.82255 -12.40476 -12.13486 -11.80638 -11.69347 -11.39798 -11.20055 -10.91102 -10.80492 -10.62485 -10.55562 -10.51425 -10.20153 -10.11843 -9.48747 -9.24538 -8.98356 -8.82990 -8.28180 -7.89710 -5.93621 -3.95348 3.36123 3.41998 3.46080 4.16963 4.30595 4.51909 4.71606 4.81410 4.95540 5.02272 5.10770 5.17326 5.42031 5.43202 5.54294 5.61755 5.63133 5.73831 5.77187 5.83006 5.85280 5.88390 5.98893 6.09956 6.19853 6.27424 6.35090 6.43483 6.46459 6.81810 6.89892 6.97719 7.22649 7.26246 7.55150 7.56953 7.76313 7.92310 8.07705 8.51280 9.12042 9.68204 11.17906 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046881 B = 0.003992 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.117736 B = 7012.185105 C = 7386.362462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.077 0.923 4 N -0.843 5.843 5 C -0.076 4.076 6 H 0.075 0.925 7 C -0.116 4.116 8 C -0.115 4.115 9 C 0.051 3.949 10 N -0.541 5.541 11 C 0.058 3.942 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.070 3.930 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.338 0.662 27 H 0.341 0.659 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.083 0.917 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.656 7.597 7.069 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.021 4.021 3 H 0.095 0.905 4 N -0.371 5.371 5 C -0.095 4.095 6 H 0.094 0.906 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.077 4.077 10 N -0.265 5.265 11 C -0.069 4.069 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.058 4.058 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -18.922 7.317 6.834 21.408 hybrid contribution -0.261 0.120 -0.502 0.579 sum -19.184 7.437 6.332 21.527 Atomic orbital electron populations 1.22681 0.97936 1.01981 1.02079 1.21468 0.91767 0.98383 0.90484 0.90472 1.58867 1.67432 1.06861 1.03961 1.21188 0.95914 0.99643 0.92736 0.90639 1.21670 0.99843 0.99145 0.94709 1.21572 0.95498 1.01197 0.97039 1.22126 0.94925 0.96303 0.94343 1.61976 1.12618 1.50394 1.01504 1.22244 0.84880 0.98772 1.00996 1.21649 0.99361 0.97878 0.95325 1.19079 0.88693 0.96774 0.97100 1.21267 0.92060 1.28692 1.13498 0.92712 1.25032 0.96913 0.96283 0.96340 1.69971 1.01355 1.44778 1.37549 0.86604 0.78119 0.80897 0.82443 1.20749 1.21270 1.19861 1.21976 0.93726 0.96664 0.93461 0.92670 0.93016 0.91763 0.84991 0.84657 0.92033 0.92432 0.91228 0.91902 0.95548 0.90073 0.91262 0.95610 0.93574 0.92683 0.96597 0.96883 0.93092 0.89819 0.95844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 9.13 37.16 0.34 -1.04 16 2 C 0.09 0.82 2.95 -67.71 -0.20 0.62 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 N -0.84 -7.35 8.51 -4.66 -0.04 -7.39 16 5 C -0.08 -0.83 2.06 -90.54 -0.19 -1.01 16 6 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.12 -1.18 4.86 -26.61 -0.13 -1.31 16 8 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 9 C 0.05 0.75 5.29 -3.83 -0.02 0.73 16 10 N -0.54 -8.66 4.66 -234.67 -1.09 -9.76 16 11 C 0.06 1.09 4.96 -3.83 -0.02 1.07 16 12 C -0.10 -2.27 5.08 -26.74 -0.14 -2.41 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 15 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 18 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.07 0.96 4.57 -3.83 -0.02 0.95 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.46 6.49 -51.93 -0.34 0.12 16 26 H 0.34 2.37 9.04 -39.29 -0.36 2.01 16 27 H 0.34 2.79 8.98 -39.30 -0.35 2.43 16 28 H 0.06 0.54 6.58 -51.93 -0.34 0.20 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 1.28 6.21 -51.93 -0.32 0.96 16 34 H 0.07 1.30 7.99 -51.93 -0.41 0.89 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.05 0.99 6.43 -51.93 -0.33 0.65 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.08 1.23 7.51 -51.93 -0.39 0.84 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -30.61 322.95 -9.51 -40.12 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.88 Total: -0.70 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.08 Total: -17.38 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.40 Total: -44.02 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.61 -9.51 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069626894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.418 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds