Wall clock time and date at job start Mon Mar 30 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46909 * 2 1 4 4 N 1.46908 * 109.46860 * 119.99458 * 2 1 3 5 5 C 1.52992 * 109.47570 * 239.99732 * 2 1 3 6 6 H 1.09004 * 109.53352 * 300.09735 * 5 2 1 7 7 C 1.53120 * 109.50296 * 60.19621 * 5 2 1 8 8 C 1.53118 * 109.16026 * 177.59659 * 7 5 2 9 9 C 1.53048 * 109.27745 * 302.34502 * 8 7 5 10 10 N 1.46848 * 109.52064 * 59.17773 * 9 8 7 11 11 C 1.46901 * 110.99510 * 174.15537 * 10 9 8 12 12 C 1.52992 * 109.47859 * 294.21467 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 C 1.46844 * 111.20087 * 298.25789 * 10 9 8 23 23 H 1.09006 * 109.46909 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47370 * 299.99987 * 1 2 3 25 25 H 1.09004 * 109.47084 * 60.00762 * 1 2 3 26 26 H 1.00900 * 110.99995 * 300.00241 * 4 2 1 27 27 H 1.00890 * 110.99652 * 63.95773 * 4 2 1 28 28 H 1.08999 * 109.52255 * 297.49845 * 7 5 2 29 29 H 1.08999 * 109.52028 * 57.62959 * 7 5 2 30 30 H 1.08998 * 109.50497 * 62.28236 * 8 7 5 31 31 H 1.08994 * 109.50134 * 182.40729 * 8 7 5 32 32 H 1.08996 * 109.45875 * 299.16470 * 9 8 7 33 33 H 1.08994 * 109.45842 * 179.19707 * 9 8 7 34 34 H 1.09002 * 109.46980 * 174.21126 * 11 10 9 35 35 H 1.09001 * 109.46628 * 54.21548 * 11 10 9 36 36 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 37 37 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 38 38 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 39 39 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.46077 * 181.76172 * 22 10 9 42 42 H 1.08995 * 109.45945 * 301.73995 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0401 -0.7213 -1.2491 6 1 1.6759 -1.7487 -1.2510 7 6 1.5342 0.0028 -2.4999 8 6 2.0980 -0.6895 -3.7439 9 6 3.6268 -0.6907 -3.6722 10 7 4.0606 -1.3953 -2.4590 11 6 5.5224 -1.5372 -2.4269 12 6 5.9711 -2.4536 -3.5669 13 6 7.4936 -2.6009 -3.5338 14 6 7.9354 -3.5041 -4.6563 15 1 7.2036 -3.9302 -5.3265 16 6 9.2742 -3.7857 -4.8283 17 7 10.1654 -3.2664 -4.0124 18 14 9.8219 -4.9047 -6.2201 19 1 10.0923 -4.0908 -7.4323 20 1 11.0586 -5.6231 -5.8202 21 1 8.7504 -5.8898 -6.5141 22 6 3.5705 -0.7216 -1.2497 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 1.6961 -0.2348 2.0386 27 1 1.7502 -1.6647 1.1911 28 1 0.4451 -0.0324 -2.5256 29 1 1.8648 1.0412 -2.4784 30 1 1.7348 -1.7163 -3.7850 31 1 1.7760 -0.1529 -4.6362 32 1 3.9899 0.3366 -3.6450 33 1 4.0310 -1.1955 -4.5495 34 1 5.8246 -1.9693 -1.4729 35 1 5.9851 -0.5574 -2.5449 36 1 5.6688 -2.0216 -4.5208 37 1 5.5082 -3.4334 -3.4489 38 1 7.7962 -3.0327 -2.5798 39 1 7.9560 -1.6209 -3.6520 40 1 11.1072 -3.4648 -4.1332 41 1 3.9340 -1.2488 -0.3677 42 1 3.9337 0.3059 -1.2340 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069626894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:11 Heat of formation + Delta-G solvation = -50.400116 kcal Electronic energy + Delta-G solvation = -17604.358614 eV Core-core repulsion = 15002.784938 eV Total energy + Delta-G solvation = -2601.573677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41697 -37.56897 -35.83471 -34.37546 -32.56321 -31.22132 -29.46653 -28.20883 -25.70396 -24.47643 -23.44881 -22.07459 -21.03242 -20.68228 -18.49273 -17.23179 -16.62182 -16.30129 -16.21798 -15.67073 -15.53254 -15.08317 -14.81297 -14.42224 -14.16709 -13.95556 -13.82594 -13.49881 -13.39112 -13.01608 -12.65459 -12.50882 -12.48727 -12.36642 -12.23142 -11.87627 -11.56589 -11.49222 -11.38787 -11.30292 -11.10817 -10.88219 -10.54709 -9.50450 -9.22117 -8.19808 -6.31213 1.39917 1.41920 1.53353 2.41317 2.96738 3.12987 3.59220 3.83197 3.95110 4.05785 4.13957 4.21665 4.30170 4.40550 4.45595 4.49433 4.63391 4.70292 4.72386 4.78136 4.84822 4.96731 4.99407 5.00830 5.05512 5.10500 5.13531 5.20459 5.25210 5.30287 5.42251 5.51429 5.55188 5.74100 5.85473 6.14942 6.27465 6.30461 6.34110 6.67784 6.85360 7.37924 8.92343 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046881 B = 0.003992 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.117736 B = 7012.185105 C = 7386.362462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.096 3.904 3 H 0.072 0.928 4 N -0.854 5.854 5 C -0.069 4.069 6 H 0.070 0.930 7 C -0.111 4.111 8 C -0.110 4.110 9 C 0.047 3.953 10 N -0.545 5.545 11 C 0.069 3.931 12 C -0.087 4.087 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.072 3.928 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.348 0.652 27 H 0.344 0.656 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.018 0.982 36 H 0.050 0.950 37 H 0.051 0.949 38 H -0.009 1.009 39 H -0.011 1.011 40 H 0.264 0.736 41 H 0.073 0.927 42 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.525 7.543 6.457 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.016 4.016 3 H 0.090 0.910 4 N -0.385 5.385 5 C -0.088 4.088 6 H 0.088 0.912 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.081 4.081 10 N -0.269 5.269 11 C -0.059 4.059 12 C -0.125 4.125 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.187 1.187 22 C -0.056 4.056 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.161 0.839 27 H 0.157 0.843 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -20.819 7.274 6.232 22.916 hybrid contribution 0.348 0.162 -0.269 0.469 sum -20.471 7.436 5.963 22.581 Atomic orbital electron populations 1.22596 0.96190 1.02306 1.02857 1.21365 0.93010 0.97634 0.89565 0.90980 1.58842 1.67930 1.07244 1.04453 1.21142 0.93379 0.99871 0.94418 0.91187 1.21662 1.01156 0.98822 0.93295 1.21556 0.92868 1.01587 0.98757 1.22209 0.97297 0.95634 0.92947 1.61962 1.10341 1.51509 1.03081 1.21973 0.87120 0.97501 0.99297 1.21383 0.95748 0.98487 0.96874 1.18975 0.91972 0.94861 0.95396 1.21682 0.92762 1.29364 1.14267 0.92254 1.26021 0.96930 0.97837 0.99188 1.70106 1.01859 1.46068 1.39441 0.85409 0.77844 0.78769 0.78799 1.19664 1.20610 1.18703 1.22004 0.95981 0.95681 0.91891 0.92536 0.92019 0.91231 0.83850 0.84326 0.89694 0.92170 0.91565 0.90018 0.95777 0.91610 0.91787 0.96357 0.93178 0.93025 0.99060 0.99310 0.92740 0.90894 0.96477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.13 71.98 0.66 -1.49 16 2 C 0.10 1.55 2.95 44.91 0.13 1.68 16 3 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 4 N -0.85 -13.76 8.51 -168.67 -1.43 -15.20 16 5 C -0.07 -1.39 2.06 -10.74 -0.02 -1.42 16 6 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 7 C -0.11 -2.00 4.86 30.67 0.15 -1.85 16 8 C -0.11 -2.35 6.09 30.65 0.19 -2.16 16 9 C 0.05 1.35 5.29 86.33 0.46 1.80 16 10 N -0.54 -17.41 4.66 -896.37 -4.17 -21.58 16 11 C 0.07 2.65 4.96 86.30 0.43 3.07 16 12 C -0.09 -3.88 5.08 30.59 0.16 -3.73 16 13 C 0.03 1.42 4.97 29.85 0.15 1.57 16 14 C -0.54 -32.20 9.11 25.60 0.23 -31.97 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 17 N -0.93 -58.51 13.29 21.45 0.28 -58.23 16 18 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 22 C 0.07 1.96 4.57 86.33 0.39 2.36 16 23 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.77 6.49 -2.38 -0.02 0.75 16 26 H 0.35 4.34 9.04 -89.69 -0.81 3.53 16 27 H 0.34 5.19 8.98 -89.70 -0.81 4.38 16 28 H 0.08 1.19 6.58 -2.39 -0.02 1.17 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 2.07 6.21 -2.39 -0.01 2.05 16 34 H 0.06 2.49 7.99 -2.39 -0.02 2.48 16 35 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 36 H 0.05 2.18 6.43 -2.39 -0.02 2.16 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.07 2.14 7.51 -2.39 -0.02 2.12 16 42 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -66.03 322.95 -0.56 -66.58 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -0.64 Total: 12.82 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 3.38 Total: -31.80 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -5.32 Total: -95.01 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.03 -0.56 -66.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069626894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.181 kcal (2) G-P(sol) polarization free energy of solvation -66.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds