Wall clock time and date at job start Mon Mar 30 2020 03:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00215 * 2 1 4 4 C 1.52995 * 109.47425 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47200 * 174.68377 * 4 3 2 6 6 H 1.09001 * 109.46285 * 302.75548 * 5 4 3 7 7 C 1.53034 * 109.46123 * 62.73253 * 5 4 3 8 8 C 1.53121 * 109.27766 * 179.19478 * 7 5 4 9 9 C 1.53120 * 109.16109 * 302.34773 * 8 7 5 10 10 C 1.53035 * 109.27846 * 57.65116 * 9 8 7 11 11 N 1.46839 * 109.51691 * 300.81401 * 10 9 8 12 12 C 1.46903 * 110.99159 * 185.84659 * 11 10 9 13 13 H 1.09005 * 109.46830 * 180.74030 * 12 11 10 14 14 C 1.52993 * 109.47290 * 300.74139 * 12 11 10 15 15 C 1.50697 * 109.46785 * 60.74313 * 12 11 10 16 16 H 1.07998 * 120.00058 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99816 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99937 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 120.00097 * 359.97438 * 17 15 12 20 20 H 1.48501 * 109.47115 * 89.99809 * 19 17 15 21 21 H 1.48504 * 109.47078 * 210.00052 * 19 17 15 22 22 H 1.48500 * 109.47049 * 329.99664 * 19 17 15 23 23 H 1.09001 * 109.47310 * 59.99967 * 1 2 3 24 24 H 1.09003 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47448 * 299.99724 * 1 2 3 26 26 H 1.00906 * 111.00078 * 236.04720 * 2 1 3 27 27 H 1.09000 * 109.46867 * 60.00087 * 3 2 1 28 28 H 1.08997 * 109.47351 * 300.00257 * 3 2 1 29 29 H 1.08993 * 109.47732 * 294.68837 * 4 3 2 30 30 H 1.09004 * 109.46822 * 54.68402 * 4 3 2 31 31 H 1.08995 * 109.50647 * 299.13685 * 7 5 4 32 32 H 1.09005 * 109.50288 * 59.21768 * 7 5 4 33 33 H 1.08997 * 109.52108 * 62.25190 * 8 7 5 34 34 H 1.09003 * 109.52319 * 182.38047 * 8 7 5 35 35 H 1.08998 * 109.50458 * 177.59952 * 9 8 7 36 36 H 1.09005 * 109.50364 * 297.67016 * 9 8 7 37 37 H 1.09003 * 109.46175 * 60.84353 * 10 9 8 38 38 H 1.09006 * 109.45957 * 180.81262 * 10 9 8 39 39 H 1.08996 * 109.47568 * 299.99909 * 14 12 11 40 40 H 1.09005 * 109.47273 * 60.00162 * 14 12 11 41 41 H 1.09004 * 109.47219 * 180.02562 * 14 12 11 42 42 H 0.97002 * 120.00010 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5248 1.3306 0.0006 5 6 4.0730 2.7528 -0.1330 6 1 3.6822 3.2086 -1.0427 7 6 3.6412 3.5816 1.0788 8 6 4.2087 4.9980 0.9506 9 6 5.7335 4.9199 0.8345 10 6 6.1046 4.0522 -0.3702 11 7 5.5394 2.7078 -0.1991 12 6 5.9907 1.8072 -1.2684 13 1 5.5470 0.8219 -1.1250 14 6 5.5585 2.3687 -2.6244 15 6 7.4927 1.6924 -1.2278 16 1 8.0558 2.2346 -0.4826 17 6 8.1481 0.8952 -2.1422 18 7 9.4591 0.7954 -2.1071 19 14 7.1742 -0.0431 -3.4308 20 1 7.0224 0.7974 -4.6456 21 1 7.8935 -1.2941 -3.7811 22 1 5.8324 -0.3785 -2.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8306 -0.5261 -0.7814 27 1 1.6459 1.8947 0.8900 28 1 1.6459 1.8948 -0.8899 29 1 3.8763 0.8920 0.9345 30 1 3.8725 0.7269 -0.8377 31 1 2.5529 3.6279 1.1189 32 1 4.0196 3.1184 1.9901 33 1 3.7995 5.4751 0.0601 34 1 3.9389 5.5797 1.8322 35 1 6.1401 5.9222 0.7002 36 1 6.1455 4.4788 1.7422 37 1 5.7043 4.5019 -1.2788 38 1 7.1898 3.9827 -0.4471 39 1 4.4721 2.4517 -2.6538 40 1 6.0023 3.3540 -2.7678 41 1 5.8930 1.7002 -3.4178 42 1 9.9202 0.2343 -2.7501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069731063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:20 Heat of formation + Delta-G solvation = -21.256875 kcal Electronic energy + Delta-G solvation = -18653.514902 eV Core-core repulsion = 16053.204971 eV Total energy + Delta-G solvation = -2600.309931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62817 -37.30989 -36.07687 -34.07797 -33.49686 -30.65941 -29.43650 -27.25209 -25.89368 -25.06893 -23.75201 -22.18445 -21.49813 -20.03825 -18.61345 -17.28165 -17.01924 -16.48189 -15.82088 -15.51635 -15.34842 -15.15064 -14.68992 -14.59177 -14.54085 -14.05610 -13.85542 -13.56314 -13.24199 -13.02161 -12.86619 -12.55457 -12.52692 -12.25963 -12.11169 -11.96273 -11.76401 -11.56849 -11.41909 -11.23919 -10.86970 -10.76791 -10.68352 -9.39975 -8.84910 -8.26770 -6.28084 1.27397 1.33516 1.43463 2.31566 3.05965 3.12413 3.42069 3.90531 4.02905 4.10914 4.19037 4.29627 4.39938 4.47874 4.49658 4.53506 4.58089 4.58880 4.67234 4.68981 4.72441 4.75245 4.92747 4.98308 5.03059 5.09456 5.10597 5.17233 5.25587 5.32225 5.36100 5.41184 5.48007 5.59385 5.70484 6.06519 6.12033 6.39365 6.52367 6.77151 6.82521 7.36110 8.90156 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.009195 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.269491 B = 3044.472527 C = 4308.154235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.712 5.712 3 C 0.071 3.929 4 C -0.109 4.109 5 C 0.084 3.916 6 H 0.033 0.967 7 C -0.105 4.105 8 C -0.113 4.113 9 C -0.113 4.113 10 C 0.064 3.936 11 N -0.530 5.530 12 C 0.183 3.817 13 H 0.041 0.959 14 C -0.179 4.179 15 C -0.500 4.500 16 H 0.038 0.962 17 C 0.011 3.989 18 N -0.950 5.950 19 Si 0.948 3.052 20 H -0.271 1.271 21 H -0.299 1.299 22 H -0.248 1.248 23 H 0.025 0.975 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.342 0.658 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.024 0.976 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.034 0.966 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.516 4.704 3.133 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.342 5.342 3 C -0.059 4.059 4 C -0.147 4.147 5 C -0.025 4.025 6 H 0.051 0.949 7 C -0.143 4.143 8 C -0.151 4.151 9 C -0.151 4.151 10 C -0.065 4.065 11 N -0.254 5.254 12 C 0.074 3.926 13 H 0.059 0.941 14 C -0.237 4.237 15 C -0.538 4.538 16 H 0.057 0.943 17 C -0.186 4.186 18 N -0.591 5.591 19 Si 0.775 3.225 20 H -0.198 1.198 21 H -0.227 1.227 22 H -0.172 1.172 23 H 0.043 0.957 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.159 0.841 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.169 4.381 4.210 19.158 hybrid contribution 0.185 -0.069 -2.514 2.521 sum -17.984 4.312 1.696 18.571 Atomic orbital electron populations 1.22228 0.86570 1.02557 1.00711 1.60403 1.08943 1.14465 1.50429 1.21926 0.93506 0.89535 1.00919 1.21597 0.94967 0.96082 1.02052 1.21645 0.87528 0.95571 0.97716 0.94929 1.21649 1.00596 0.94913 0.97149 1.21554 0.94399 0.96770 1.02340 1.21593 0.97184 0.98755 0.97532 1.21932 0.99116 0.88646 0.96758 1.61988 1.07585 1.09548 1.46280 1.19594 0.93762 0.92991 0.86204 0.94111 1.22672 0.99724 1.01112 1.00219 1.21234 0.91351 1.26890 1.14352 0.94347 1.25750 0.95550 0.97476 0.99819 1.70039 1.09197 1.41429 1.38439 0.85875 0.79517 0.77393 0.79678 1.19795 1.22666 1.17185 0.95666 0.90573 0.91278 0.84104 0.89792 0.95101 0.91936 0.93352 0.89670 0.92052 0.92037 0.89997 0.90772 0.92461 0.95829 0.93333 0.92502 0.93196 0.94723 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.70 127.69 1.37 1.86 16 2 N -0.71 -16.35 6.86 -537.18 -3.68 -20.04 16 3 C 0.07 1.67 5.25 86.30 0.45 2.12 16 4 C -0.11 -3.33 4.65 30.59 0.14 -3.19 16 5 C 0.08 2.67 1.50 44.94 0.07 2.73 16 6 H 0.03 1.03 6.73 -2.39 -0.02 1.02 16 7 C -0.11 -2.68 5.06 30.65 0.16 -2.53 16 8 C -0.11 -2.70 6.00 30.67 0.18 -2.51 16 9 C -0.11 -3.36 6.09 30.65 0.19 -3.17 16 10 C 0.06 2.45 4.66 86.33 0.40 2.85 16 11 N -0.53 -21.53 4.47 -850.39 -3.80 -25.33 16 12 C 0.18 8.55 1.55 44.17 0.07 8.61 16 13 H 0.04 1.97 4.92 -2.38 -0.01 1.96 16 14 C -0.18 -7.56 7.98 71.98 0.57 -6.99 16 15 C -0.50 -28.79 8.44 25.60 0.22 -28.57 16 16 H 0.04 2.48 7.00 -2.91 -0.02 2.46 16 17 C 0.01 0.63 5.45 84.65 0.46 1.09 16 18 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 19 Si 0.95 45.52 24.37 68.60 1.67 47.19 16 20 H -0.27 -12.49 6.87 99.48 0.68 -11.81 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 23 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.34 7.78 8.82 -89.69 -0.79 6.99 16 27 H 0.08 1.79 6.80 -2.39 -0.02 1.78 16 28 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.67 6.06 -2.39 -0.01 1.65 16 31 H 0.08 1.72 6.67 -2.39 -0.02 1.70 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.02 0.89 6.62 -2.39 -0.02 0.87 16 38 H 0.05 2.24 6.34 -2.38 -0.02 2.22 16 39 H 0.06 2.05 6.65 -2.39 -0.02 2.04 16 40 H 0.05 2.13 6.52 -2.38 -0.02 2.11 16 41 H 0.03 1.51 3.28 -2.38 -0.01 1.51 16 42 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -65.48 303.61 -1.12 -66.60 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.12 Total: 19.13 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 4.28 Total: -27.68 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -7.19 Total: -105.24 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.67 Total: 47.19 kcal Total: -65.48 -1.12 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.342 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds