Wall clock time and date at job start Mon Mar 30 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47250 * 2 1 4 4 C 1.53003 * 109.46551 * 119.99444 * 2 1 3 5 5 N 1.46902 * 109.47624 * 294.99813 * 4 2 1 6 6 C 1.46896 * 111.00118 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.49436 * 223.75147 * 6 5 4 8 8 C 1.52994 * 117.49964 * 155.09148 * 6 5 4 9 9 C 1.52996 * 109.47534 * 239.99496 * 2 1 3 10 10 N 1.46901 * 109.47385 * 175.13870 * 9 2 1 11 11 C 1.46894 * 110.99898 * 288.46212 * 10 9 2 12 12 C 1.46892 * 110.99905 * 164.50796 * 10 9 2 13 13 H 1.09005 * 109.47382 * 309.99956 * 12 10 9 14 14 C 1.53002 * 109.47144 * 69.99882 * 12 10 9 15 15 C 1.50695 * 109.47184 * 189.99904 * 12 10 9 16 16 H 1.07998 * 120.00223 * 359.97438 * 15 12 10 17 17 C 1.37884 * 120.00258 * 180.02562 * 15 12 10 18 18 N 1.31515 * 120.00010 * 180.02562 * 17 15 12 19 19 Si 1.86802 * 119.99924 * 359.97438 * 17 15 12 20 20 H 1.48493 * 109.46886 * 90.00209 * 19 17 15 21 21 H 1.48503 * 109.47173 * 210.00275 * 19 17 15 22 22 H 1.48498 * 109.47102 * 330.00080 * 19 17 15 23 23 H 1.09001 * 109.47636 * 186.04670 * 1 2 3 24 24 H 1.09002 * 109.47327 * 306.04813 * 1 2 3 25 25 H 1.08999 * 109.47033 * 66.04241 * 1 2 3 26 26 H 1.09006 * 109.47006 * 174.99646 * 4 2 1 27 27 H 1.09000 * 109.47453 * 55.00452 * 4 2 1 28 28 H 1.00902 * 110.99521 * 56.04592 * 5 4 2 29 29 H 1.09003 * 115.55272 * 9.41347 * 6 5 4 30 30 H 1.08996 * 117.50295 * 359.97438 * 7 6 5 31 31 H 1.08997 * 117.50331 * 145.02289 * 7 6 5 32 32 H 1.08998 * 117.50463 * 214.97727 * 8 6 5 33 33 H 1.09005 * 117.49703 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.46595 * 295.13879 * 9 2 1 35 35 H 1.09000 * 109.47281 * 55.13078 * 9 2 1 36 36 H 1.09000 * 109.47169 * 66.68512 * 11 10 9 37 37 H 1.08993 * 109.47424 * 186.68837 * 11 10 9 38 38 H 1.09007 * 109.47237 * 306.69112 * 11 10 9 39 39 H 1.09006 * 109.47087 * 179.97438 * 14 12 10 40 40 H 1.09004 * 109.47100 * 299.99400 * 14 12 10 41 41 H 1.08997 * 109.46962 * 60.00453 * 14 12 10 42 42 H 0.96995 * 119.99761 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7212 1.2494 5 7 1.6512 0.0376 2.4458 6 6 2.1255 -0.6263 3.6673 7 6 1.1525 -0.7185 4.8444 8 6 2.3406 0.2446 4.9066 9 6 2.0401 -0.7213 -1.2491 10 7 3.5044 -0.6205 -1.3092 11 6 3.9247 0.7474 -1.6409 12 6 4.0599 -1.5882 -2.2646 13 1 3.6482 -2.5768 -2.0612 14 6 3.6936 -1.1664 -3.6890 15 6 5.5596 -1.6297 -2.1229 16 1 6.0510 -0.9998 -1.3962 17 6 6.3046 -2.4710 -2.9219 18 7 7.6134 -2.5075 -2.7978 19 14 5.4548 -3.5600 -4.1794 20 1 5.3477 -2.8343 -5.4706 21 1 6.2455 -4.8019 -4.3736 22 1 4.0957 -3.9094 -3.6937 23 1 -0.3634 -1.0219 0.1083 24 1 -0.3634 0.6047 0.8309 25 1 -0.3633 0.4173 -0.9391 26 1 3.1262 -0.7995 1.2058 27 1 1.6053 -1.7197 1.2954 28 1 0.6527 0.1795 2.4753 29 1 2.8099 -1.4607 3.5135 30 1 0.1606 -0.2863 4.7126 31 1 1.1970 -1.6132 5.4653 32 1 3.1662 -0.0168 5.5685 33 1 2.1305 1.3103 4.8155 34 1 1.7495 -1.7711 -1.2065 35 1 1.6073 -0.2604 -2.1370 36 1 3.6619 1.4169 -0.8219 37 1 5.0033 0.7686 -1.7957 38 1 3.4205 1.0717 -2.5513 39 1 4.1062 -1.8843 -4.3979 40 1 2.6088 -1.1365 -3.7915 41 1 4.1053 -0.1779 -3.8923 42 1 8.1374 -3.0996 -3.3596 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070067850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:21 Heat of formation + Delta-G solvation = 30.452661 kcal Electronic energy + Delta-G solvation = -17919.563818 eV Core-core repulsion = 15321.496181 eV Total energy + Delta-G solvation = -2598.067637 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.44769 -37.46385 -35.15260 -32.53183 -31.22727 -29.43594 -26.62257 -25.22212 -25.14691 -23.27634 -22.40203 -21.13399 -19.78823 -19.05314 -16.60303 -16.13640 -15.84400 -15.17398 -14.82345 -14.25418 -13.89952 -13.52129 -13.21338 -13.15894 -12.60906 -12.48138 -12.25974 -12.19143 -11.72749 -11.57041 -11.44369 -11.21062 -11.09752 -10.83039 -10.70302 -10.66585 -10.39620 -10.13010 -10.04521 -9.93158 -9.46969 -9.01454 -8.56176 -8.13113 -7.28533 -6.04307 -4.01724 3.26439 3.36524 3.39022 3.81086 4.13360 4.41171 4.78107 4.88796 4.96330 5.11358 5.21266 5.25219 5.29384 5.45351 5.56460 5.68861 5.76719 5.83019 5.88530 5.98579 6.00500 6.09750 6.11750 6.16052 6.20432 6.28635 6.30285 6.33476 6.58170 6.58510 6.63244 6.77090 6.92795 7.18886 7.22233 7.47075 7.67334 7.99642 8.13365 8.69900 9.04621 9.58328 11.08946 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.005497 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.315730 B = 5092.640409 C = 5575.807628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 H 0.078 0.922 4 C 0.072 3.928 5 N -0.660 5.660 6 C 0.029 3.971 7 C -0.212 4.212 8 C -0.173 4.173 9 C 0.057 3.943 10 N -0.521 5.521 11 C 0.032 3.968 12 C 0.180 3.820 13 H 0.037 0.963 14 C -0.184 4.184 15 C -0.499 4.499 16 H 0.082 0.918 17 C 0.069 3.931 18 N -0.901 5.901 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.269 1.269 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.025 0.975 28 H 0.334 0.666 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.012 0.988 39 H 0.043 0.957 40 H 0.026 0.974 41 H 0.056 0.944 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 4.214 8.574 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.057 4.057 5 N -0.290 5.290 6 C -0.082 4.082 7 C -0.251 4.251 8 C -0.212 4.212 9 C -0.072 4.072 10 N -0.244 5.244 11 C -0.116 4.116 12 C 0.072 3.928 13 H 0.054 0.946 14 C -0.243 4.243 15 C -0.537 4.537 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.717 3.283 20 H -0.209 1.209 21 H -0.225 1.225 22 H -0.195 1.195 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.043 0.957 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.031 0.969 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.469 4.435 8.915 16.750 hybrid contribution -1.322 -1.184 -1.588 2.382 sum -14.791 3.250 7.326 16.823 Atomic orbital electron populations 1.21859 0.96176 1.01241 1.01403 1.21132 0.93991 1.00790 0.94473 0.90322 1.22041 1.02802 0.93370 0.87439 1.60279 1.18626 1.49276 1.00796 1.22431 1.01205 0.98880 0.85695 1.23416 0.95293 1.02308 1.04115 1.23092 0.99368 0.97785 1.00913 1.22131 0.90151 0.99724 0.95212 1.62095 1.06202 1.05300 1.50769 1.22307 1.02356 0.89675 0.97252 1.19800 0.96546 0.91180 0.85244 0.94558 1.22823 0.97848 1.01799 1.01844 1.20953 0.88395 1.23872 1.20488 0.89975 1.24920 0.94681 0.96616 0.97046 1.69882 1.04887 1.38935 1.40232 0.86895 0.79484 0.79837 0.82093 1.20860 1.22501 1.19465 0.93114 0.92814 0.92804 0.88546 0.95705 0.84622 0.87178 0.89093 0.89047 0.88894 0.88617 0.91812 0.95451 0.93206 0.90197 0.96943 0.93873 0.95480 0.92542 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.82 37.16 0.33 -1.34 16 2 C -0.08 -1.18 2.60 -90.62 -0.24 -1.41 16 3 H 0.08 1.17 6.71 -51.93 -0.35 0.82 16 4 C 0.07 1.03 4.94 -3.82 -0.02 1.01 16 5 N -0.66 -8.38 6.78 -106.72 -0.72 -9.10 16 6 C 0.03 0.34 6.31 -67.72 -0.43 -0.08 16 7 C -0.21 -2.08 10.23 -26.69 -0.27 -2.35 16 8 C -0.17 -1.84 10.46 -26.70 -0.28 -2.12 16 9 C 0.06 0.95 3.80 -3.83 -0.01 0.93 16 10 N -0.52 -10.50 4.03 -236.29 -0.95 -11.45 16 11 C 0.03 0.62 8.26 60.06 0.50 1.11 16 12 C 0.18 4.22 1.89 -68.87 -0.13 4.09 16 13 H 0.04 0.89 6.92 -51.93 -0.36 0.53 16 14 C -0.18 -4.03 7.95 37.16 0.30 -3.73 16 15 C -0.50 -13.85 8.39 -34.44 -0.29 -14.14 16 16 H 0.08 2.50 7.43 -52.49 -0.39 2.11 16 17 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 18 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 19 Si 0.89 21.97 24.37 -169.99 -4.14 17.83 16 20 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 21 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.53 6.96 -51.93 -0.36 0.17 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 1.68 7.62 -51.93 -0.40 1.28 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.33 3.74 6.90 -39.29 -0.27 3.47 16 29 H 0.11 1.38 7.90 -51.93 -0.41 0.97 16 30 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.07 7.82 -51.93 -0.41 0.67 16 35 H 0.03 0.45 7.16 -51.93 -0.37 0.08 16 36 H 0.05 0.85 6.87 -51.93 -0.36 0.49 16 37 H 0.08 1.71 6.64 -51.93 -0.34 1.37 16 38 H 0.01 0.22 6.73 -51.92 -0.35 -0.13 16 39 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 40 H 0.03 0.51 7.05 -51.93 -0.37 0.15 16 41 H 0.06 1.21 6.57 -51.93 -0.34 0.87 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -29.03 316.54 -8.30 -37.33 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.38 Total: 3.48 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.65 Total: -16.15 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.90 Total: -47.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.03 -8.30 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070067850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.779 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds