Wall clock time and date at job start Mon Mar 30 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47250 * 2 1 4 4 C 1.53003 * 109.46551 * 119.99444 * 2 1 3 5 5 N 1.46902 * 109.47624 * 294.99813 * 4 2 1 6 6 C 1.46896 * 111.00118 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.49436 * 223.75147 * 6 5 4 8 8 C 1.52994 * 117.49964 * 155.09148 * 6 5 4 9 9 C 1.52996 * 109.47534 * 239.99496 * 2 1 3 10 10 N 1.46901 * 109.47385 * 175.13870 * 9 2 1 11 11 C 1.46894 * 110.99898 * 288.46212 * 10 9 2 12 12 C 1.46892 * 110.99905 * 164.50796 * 10 9 2 13 13 H 1.09005 * 109.47382 * 309.99956 * 12 10 9 14 14 C 1.53002 * 109.47144 * 69.99882 * 12 10 9 15 15 C 1.50695 * 109.47184 * 189.99904 * 12 10 9 16 16 H 1.07998 * 120.00223 * 359.97438 * 15 12 10 17 17 C 1.37884 * 120.00258 * 180.02562 * 15 12 10 18 18 N 1.31515 * 120.00010 * 180.02562 * 17 15 12 19 19 Si 1.86802 * 119.99924 * 359.97438 * 17 15 12 20 20 H 1.48493 * 109.46886 * 90.00209 * 19 17 15 21 21 H 1.48503 * 109.47173 * 210.00275 * 19 17 15 22 22 H 1.48498 * 109.47102 * 330.00080 * 19 17 15 23 23 H 1.09001 * 109.47636 * 186.04670 * 1 2 3 24 24 H 1.09002 * 109.47327 * 306.04813 * 1 2 3 25 25 H 1.08999 * 109.47033 * 66.04241 * 1 2 3 26 26 H 1.09006 * 109.47006 * 174.99646 * 4 2 1 27 27 H 1.09000 * 109.47453 * 55.00452 * 4 2 1 28 28 H 1.00902 * 110.99521 * 56.04592 * 5 4 2 29 29 H 1.09003 * 115.55272 * 9.41347 * 6 5 4 30 30 H 1.08996 * 117.50295 * 359.97438 * 7 6 5 31 31 H 1.08997 * 117.50331 * 145.02289 * 7 6 5 32 32 H 1.08998 * 117.50463 * 214.97727 * 8 6 5 33 33 H 1.09005 * 117.49703 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.46595 * 295.13879 * 9 2 1 35 35 H 1.09000 * 109.47281 * 55.13078 * 9 2 1 36 36 H 1.09000 * 109.47169 * 66.68512 * 11 10 9 37 37 H 1.08993 * 109.47424 * 186.68837 * 11 10 9 38 38 H 1.09007 * 109.47237 * 306.69112 * 11 10 9 39 39 H 1.09006 * 109.47087 * 179.97438 * 14 12 10 40 40 H 1.09004 * 109.47100 * 299.99400 * 14 12 10 41 41 H 1.08997 * 109.46962 * 60.00453 * 14 12 10 42 42 H 0.96995 * 119.99761 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7212 1.2494 5 7 1.6512 0.0376 2.4458 6 6 2.1255 -0.6263 3.6673 7 6 1.1525 -0.7185 4.8444 8 6 2.3406 0.2446 4.9066 9 6 2.0401 -0.7213 -1.2491 10 7 3.5044 -0.6205 -1.3092 11 6 3.9247 0.7474 -1.6409 12 6 4.0599 -1.5882 -2.2646 13 1 3.6482 -2.5768 -2.0612 14 6 3.6936 -1.1664 -3.6890 15 6 5.5596 -1.6297 -2.1229 16 1 6.0510 -0.9998 -1.3962 17 6 6.3046 -2.4710 -2.9219 18 7 7.6134 -2.5075 -2.7978 19 14 5.4548 -3.5600 -4.1794 20 1 5.3477 -2.8343 -5.4706 21 1 6.2455 -4.8019 -4.3736 22 1 4.0957 -3.9094 -3.6937 23 1 -0.3634 -1.0219 0.1083 24 1 -0.3634 0.6047 0.8309 25 1 -0.3633 0.4173 -0.9391 26 1 3.1262 -0.7995 1.2058 27 1 1.6053 -1.7197 1.2954 28 1 0.6527 0.1795 2.4753 29 1 2.8099 -1.4607 3.5135 30 1 0.1606 -0.2863 4.7126 31 1 1.1970 -1.6132 5.4653 32 1 3.1662 -0.0168 5.5685 33 1 2.1305 1.3103 4.8155 34 1 1.7495 -1.7711 -1.2065 35 1 1.6073 -0.2604 -2.1370 36 1 3.6619 1.4169 -0.8219 37 1 5.0033 0.7686 -1.7957 38 1 3.4205 1.0717 -2.5513 39 1 4.1062 -1.8843 -4.3979 40 1 2.6088 -1.1365 -3.7915 41 1 4.1053 -0.1779 -3.8923 42 1 8.1374 -3.0996 -3.3596 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070067850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:20 Heat of formation + Delta-G solvation = 10.271015 kcal Electronic energy + Delta-G solvation = -17920.438959 eV Core-core repulsion = 15321.496181 eV Total energy + Delta-G solvation = -2598.942779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.74689 -38.65497 -36.42367 -34.49089 -32.50389 -31.07064 -27.97066 -27.19760 -26.33766 -24.82208 -23.20208 -22.09087 -21.36358 -20.46377 -18.66576 -17.16101 -17.14154 -16.70328 -16.36099 -15.64998 -15.38085 -14.79731 -14.74327 -14.35362 -14.09926 -13.97950 -13.73769 -13.39796 -13.12861 -12.97208 -12.90320 -12.51964 -12.35685 -12.31132 -12.02570 -11.93140 -11.75197 -11.64009 -11.41580 -11.28815 -11.09465 -10.99873 -10.73668 -9.11472 -8.86199 -8.25997 -6.27890 1.29667 1.35294 1.45345 2.32825 2.94309 3.08228 3.16834 3.30814 4.02762 4.04509 4.12343 4.18186 4.21491 4.34166 4.44637 4.51229 4.58360 4.63411 4.68592 4.71137 4.78616 4.80349 4.84116 4.91877 4.94194 5.04764 5.07288 5.09922 5.20027 5.25798 5.29998 5.40762 5.48300 5.52203 5.65470 6.09534 6.15372 6.47045 6.55179 6.76060 6.79523 7.36645 8.91145 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.005497 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.315730 B = 5092.640409 C = 5575.807628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 H 0.071 0.929 4 C 0.081 3.919 5 N -0.661 5.661 6 C 0.003 3.997 7 C -0.190 4.190 8 C -0.174 4.174 9 C 0.058 3.942 10 N -0.537 5.537 11 C 0.041 3.959 12 C 0.183 3.817 13 H 0.031 0.969 14 C -0.178 4.178 15 C -0.499 4.499 16 H 0.037 0.963 17 C 0.010 3.990 18 N -0.951 5.951 19 Si 0.950 3.050 20 H -0.269 1.269 21 H -0.300 1.300 22 H -0.249 1.249 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.024 0.976 28 H 0.345 0.655 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.027 0.973 39 H 0.034 0.966 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.656 4.295 8.414 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 H 0.089 0.911 4 C -0.048 4.048 5 N -0.292 5.292 6 C -0.108 4.108 7 C -0.229 4.229 8 C -0.212 4.212 9 C -0.070 4.070 10 N -0.259 5.259 11 C -0.107 4.107 12 C 0.075 3.925 13 H 0.049 0.951 14 C -0.237 4.237 15 C -0.537 4.537 16 H 0.055 0.945 17 C -0.186 4.186 18 N -0.592 5.592 19 Si 0.778 3.222 20 H -0.195 1.195 21 H -0.228 1.228 22 H -0.173 1.173 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.166 0.834 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.789 4.536 8.772 19.478 hybrid contribution -0.262 -1.138 -1.405 1.827 sum -17.051 3.397 7.367 18.882 Atomic orbital electron populations 1.21791 0.93394 1.02095 1.02608 1.21045 0.96122 0.99601 0.92773 0.91092 1.21800 1.00404 0.93829 0.88723 1.60220 1.19470 1.49087 1.00431 1.22452 1.02795 0.99404 0.86169 1.23462 0.95281 1.02234 1.01895 1.23147 1.00310 0.97844 0.99943 1.22223 0.87477 1.00296 0.97036 1.61987 1.08868 1.05090 1.49999 1.22190 1.00230 0.89615 0.98681 1.19586 0.93562 0.92017 0.87336 0.95126 1.22688 0.99928 1.01273 0.99824 1.21194 0.91112 1.22510 1.18908 0.94480 1.25767 0.95166 0.98299 0.99404 1.70043 1.06779 1.40458 1.41917 0.85842 0.79085 0.77615 0.79690 1.19544 1.22758 1.17332 0.92525 0.91245 0.91916 0.92367 0.95737 0.83395 0.88671 0.87797 0.87953 0.88339 0.88657 0.91881 0.94252 0.91358 0.93683 0.95475 0.94733 0.92217 0.92775 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.82 71.98 0.63 -2.03 16 2 C -0.08 -1.97 2.60 -10.79 -0.03 -1.99 16 3 H 0.07 1.96 6.71 -2.39 -0.02 1.95 16 4 C 0.08 2.29 4.94 86.30 0.43 2.71 16 5 N -0.66 -15.97 6.78 -491.56 -3.33 -19.30 16 6 C 0.00 0.06 6.31 44.91 0.28 0.34 16 7 C -0.19 -3.28 10.23 30.62 0.31 -2.97 16 8 C -0.17 -3.47 10.46 30.62 0.32 -3.15 16 9 C 0.06 1.81 3.80 86.30 0.33 2.14 16 10 N -0.54 -21.44 4.03 -901.50 -3.63 -25.07 16 11 C 0.04 1.55 8.26 127.69 1.05 2.61 16 12 C 0.18 8.51 1.89 44.17 0.08 8.59 16 13 H 0.03 1.47 6.92 -2.38 -0.02 1.45 16 14 C -0.18 -7.38 7.95 71.98 0.57 -6.81 16 15 C -0.50 -28.58 8.39 25.60 0.21 -28.37 16 16 H 0.04 2.40 7.43 -2.91 -0.02 2.38 16 17 C 0.01 0.60 5.45 84.66 0.46 1.06 16 18 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 19 Si 0.95 45.17 24.37 68.60 1.67 46.84 16 20 H -0.27 -12.20 6.87 99.48 0.68 -11.52 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 22 H -0.25 -10.95 6.53 99.48 0.65 -10.30 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.12 6.96 -2.39 -0.02 1.10 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.06 2.09 7.62 -2.38 -0.02 2.07 16 27 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.35 6.88 6.90 -89.69 -0.62 6.26 16 29 H 0.10 2.45 7.90 -2.39 -0.02 2.43 16 30 H 0.10 1.55 8.09 -2.39 -0.02 1.53 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.06 1.98 7.82 -2.38 -0.02 1.96 16 35 H 0.04 1.15 7.16 -2.39 -0.02 1.13 16 36 H 0.07 2.30 6.87 -2.39 -0.02 2.28 16 37 H 0.04 2.00 6.64 -2.39 -0.02 1.98 16 38 H 0.03 0.93 6.73 -2.38 -0.02 0.92 16 39 H 0.03 1.48 3.27 -2.38 -0.01 1.47 16 40 H 0.06 2.07 7.05 -2.39 -0.02 2.05 16 41 H 0.05 2.24 6.57 -2.39 -0.02 2.22 16 42 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -64.45 316.54 -0.04 -64.49 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.28 Total: 20.67 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 4.66 Total: -27.87 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -6.66 Total: -104.14 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -64.45 -0.04 -64.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070067850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.765 kcal (2) G-P(sol) polarization free energy of solvation -64.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds