Wall clock time and date at job start Mon Mar 30 2020 04:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47084 * 2 1 4 4 C 1.46900 * 111.00526 * 66.04241 * 3 2 1 5 5 C 1.46909 * 110.99972 * 189.99936 * 3 2 1 6 6 C 1.53007 * 109.46840 * 169.99976 * 5 3 2 7 7 H 1.08994 * 110.64862 * 56.69792 * 6 5 3 8 8 C 1.54597 * 110.72229 * 293.54196 * 6 5 3 9 9 C 1.53991 * 105.14150 * 219.68883 * 8 6 5 10 10 N 1.47908 * 107.05732 * 358.77487 * 9 8 6 11 11 C 1.46903 * 110.99958 * 145.84318 * 10 9 8 12 12 H 1.08998 * 109.47236 * 302.33646 * 11 10 9 13 13 C 1.52995 * 109.46764 * 62.33776 * 11 10 9 14 14 C 1.50701 * 109.47067 * 182.33657 * 11 10 9 15 15 H 1.08008 * 119.99784 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99962 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99994 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99923 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47190 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46988 * 119.99930 * 18 16 14 21 21 H 1.48494 * 109.46934 * 240.00058 * 18 16 14 22 22 C 1.48531 * 105.81921 * 25.33301 * 10 9 8 23 23 H 1.09000 * 109.47047 * 300.00377 * 1 2 3 24 24 H 1.09002 * 109.46695 * 60.00590 * 1 2 3 25 25 H 1.08998 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47568 * 239.99642 * 2 1 3 27 27 H 1.09001 * 109.47372 * 119.99732 * 2 1 3 28 28 H 1.08994 * 109.47569 * 183.95236 * 4 3 2 29 29 H 1.08995 * 109.46935 * 303.96105 * 4 3 2 30 30 H 1.09001 * 109.46912 * 63.95308 * 4 3 2 31 31 H 1.09003 * 109.46782 * 289.99536 * 5 3 2 32 32 H 1.08996 * 109.46897 * 49.99918 * 5 3 2 33 33 H 1.09000 * 110.30977 * 338.60857 * 8 6 5 34 34 H 1.08999 * 110.30669 * 100.77523 * 8 6 5 35 35 H 1.08994 * 109.92041 * 118.12744 * 9 8 6 36 36 H 1.09000 * 109.91812 * 239.23092 * 9 8 6 37 37 H 1.09007 * 109.47327 * 305.68512 * 13 11 10 38 38 H 1.08996 * 109.47660 * 65.69150 * 13 11 10 39 39 H 1.09002 * 109.47116 * 185.69244 * 13 11 10 40 40 H 0.97001 * 120.00214 * 179.97438 * 17 16 14 41 41 H 1.09002 * 110.66935 * 202.36018 * 22 10 9 42 42 H 1.09004 * 110.67176 * 79.22412 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 3.4686 1.4311 -0.2381 6 6 3.8999 2.8792 -0.4791 7 1 3.6125 3.5108 0.3614 8 6 3.2988 3.4168 -1.7981 9 6 4.4193 4.2574 -2.4377 10 7 5.5728 4.2183 -1.5127 11 6 6.8418 4.2341 -2.2527 12 1 6.8726 3.3882 -2.9392 13 6 6.9538 5.5383 -3.0448 14 6 7.9905 4.1356 -1.2822 15 1 7.7972 4.0684 -0.2216 16 6 9.2882 4.1323 -1.7480 17 7 9.5235 4.2147 -3.0392 18 14 10.7120 4.0109 -0.5449 19 1 10.1839 3.9294 0.8406 20 1 11.5091 2.7939 -0.8427 21 1 11.5749 5.2123 -0.6764 22 6 5.4258 2.9613 -0.7351 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.9824 3.1099 1.1987 29 1 0.5920 2.0179 1.4051 30 1 2.1769 1.5792 2.0859 31 1 3.9926 1.0360 0.6322 32 1 3.7122 0.8289 -1.1134 33 1 3.0248 2.5901 -2.4536 34 1 2.4292 4.0405 -1.5909 35 1 4.7006 3.8303 -3.4002 36 1 4.0820 5.2851 -2.5719 37 1 6.0715 5.6585 -3.6736 38 1 7.0247 6.3782 -2.3538 39 1 7.8450 5.5072 -3.6716 40 1 10.4365 4.2128 -3.3670 41 1 5.9709 3.0256 0.2067 42 1 5.7645 2.1056 -1.3192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075541201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:37 Heat of formation + Delta-G solvation = 2.333090 kcal Electronic energy + Delta-G solvation = -18023.328769 eV Core-core repulsion = 15424.041776 eV Total energy + Delta-G solvation = -2599.286993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.85632 -37.20262 -33.90400 -31.92195 -30.38967 -28.70875 -27.95585 -26.55855 -25.03750 -23.50211 -21.48321 -20.97332 -19.72326 -18.77957 -16.50047 -15.86010 -15.50362 -15.22869 -14.90170 -14.29335 -13.72260 -13.51230 -13.21750 -12.95650 -12.45504 -12.20388 -12.08732 -11.95046 -11.79764 -11.61708 -11.15741 -11.11006 -10.98057 -10.84060 -10.61463 -10.49501 -10.27001 -10.07494 -9.94647 -9.92491 -9.69466 -8.81095 -8.40731 -8.30416 -7.18196 -5.97952 -4.01654 3.31200 3.38949 3.43584 3.90170 4.44056 4.84741 4.96661 5.09222 5.20596 5.28212 5.32852 5.35928 5.41583 5.46798 5.58711 5.65808 5.75882 5.80229 5.83731 5.91942 5.95980 6.08895 6.15135 6.27526 6.43957 6.50006 6.68472 6.74626 6.83077 6.89991 7.07896 7.09528 7.11591 7.15776 7.55520 7.70784 7.87911 8.20037 8.37185 8.62842 9.05350 9.63328 11.09506 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034925 B = 0.005156 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.518701 B = 5429.288373 C = 5885.503495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.540 5.540 4 C 0.020 3.980 5 C 0.065 3.935 6 C -0.091 4.091 7 H 0.076 0.924 8 C -0.107 4.107 9 C 0.034 3.966 10 N -0.512 5.512 11 C 0.203 3.797 12 H -0.001 1.001 13 C -0.128 4.128 14 C -0.501 4.501 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.060 3.940 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.063 0.937 37 H 0.007 0.993 38 H 0.034 0.966 39 H 0.080 0.920 40 H 0.259 0.741 41 H 0.074 0.926 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.795 -6.227 5.048 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.264 5.264 4 C -0.128 4.128 5 C -0.063 4.063 6 C -0.110 4.110 7 H 0.094 0.906 8 C -0.146 4.146 9 C -0.095 4.095 10 N -0.237 5.237 11 C 0.097 3.903 12 H 0.016 0.984 13 C -0.186 4.186 14 C -0.539 4.539 15 H 0.080 0.920 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.026 0.974 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.849 -5.512 4.861 16.568 hybrid contribution 1.336 -1.168 0.644 1.888 sum -13.513 -6.680 5.505 16.048 Atomic orbital electron populations 1.21797 0.95096 1.01221 1.02424 1.22081 0.95935 0.89334 1.00574 1.62017 1.14508 1.15201 1.34668 1.22458 1.00862 0.99861 0.89621 1.22172 0.86287 0.97560 1.00300 1.22156 0.96163 0.94338 0.98390 0.90571 1.22260 0.97552 0.98783 0.95961 1.22817 0.92185 0.99175 0.95312 1.64822 1.02867 1.33157 1.22857 1.19433 0.85206 0.93712 0.91955 0.98363 1.21765 0.99637 0.98245 0.98979 1.21170 0.89972 1.49400 0.93402 0.92036 1.24935 0.98821 0.95365 0.95148 1.69920 1.20050 1.51107 1.12286 0.86485 0.82332 0.77491 0.81378 1.19773 1.21197 1.21041 1.22927 0.92611 0.92302 0.98999 0.92766 0.91860 0.92603 0.90945 0.95258 0.90874 0.91586 0.95945 0.94870 0.90896 0.92174 0.92076 0.94898 0.91837 0.97380 0.94670 0.90143 0.93122 0.90775 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.84 37.16 0.37 -0.92 16 2 C 0.05 0.50 5.68 -3.82 -0.02 0.48 16 3 N -0.54 -6.53 4.57 -242.91 -1.11 -7.64 16 4 C 0.02 0.22 9.14 60.06 0.55 0.77 16 5 C 0.06 0.88 4.29 -3.82 -0.02 0.86 16 6 C -0.09 -1.43 2.94 -88.75 -0.26 -1.69 16 7 H 0.08 1.20 6.49 -51.93 -0.34 0.86 16 8 C -0.11 -1.70 6.33 -25.38 -0.16 -1.86 16 9 C 0.03 0.64 5.39 -2.75 -0.01 0.63 16 10 N -0.51 -11.41 5.10 -223.88 -1.14 -12.55 16 11 C 0.20 5.29 1.74 -68.86 -0.12 5.17 16 12 H 0.00 -0.03 7.99 -51.93 -0.42 -0.45 16 13 C -0.13 -3.24 8.92 37.16 0.33 -2.91 16 14 C -0.50 -13.98 8.10 -34.44 -0.28 -14.26 16 15 H 0.06 1.72 6.98 -52.48 -0.37 1.36 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.89 11.38 55.43 0.63 -25.26 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.06 1.20 5.21 -1.90 -0.01 1.19 16 23 H 0.05 0.45 6.47 -51.93 -0.34 0.12 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16 27 H 0.03 0.30 8.12 -51.93 -0.42 -0.13 16 28 H 0.07 0.84 6.43 -51.93 -0.33 0.50 16 29 H 0.07 0.63 6.30 -51.93 -0.33 0.30 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 33 H 0.06 0.92 7.80 -51.93 -0.41 0.52 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.66 7.63 -51.93 -0.40 0.26 16 36 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 37 H 0.01 0.17 6.99 -51.92 -0.36 -0.20 16 38 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 2.20 6.24 -51.93 -0.32 1.87 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.07 1.52 7.43 -51.93 -0.39 1.14 16 42 H 0.04 0.76 7.90 -51.93 -0.41 0.35 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -28.83 318.59 -9.31 -38.14 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.73 Total: -3.05 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 0.27 Total: -11.01 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -1.62 Total: -45.45 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.83 -9.31 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075541201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.472 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds