Wall clock time and date at job start Mon Mar 30 2020 03:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47006 * 2 1 4 4 C 1.46901 * 110.99783 * 65.43888 * 3 2 1 5 5 C 1.52994 * 109.47188 * 66.05147 * 4 3 2 6 6 C 1.53003 * 109.47464 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47363 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99972 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99983 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99929 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99957 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47084 * 90.00000 * 11 9 7 13 13 H 1.48500 * 109.46856 * 209.99902 * 11 9 7 14 14 H 1.48500 * 109.47121 * 329.99849 * 11 9 7 15 15 C 1.46902 * 111.00219 * 301.48540 * 3 2 1 16 16 H 1.09008 * 109.50330 * 68.03306 * 15 3 2 17 17 C 1.53120 * 109.50296 * 307.95576 * 15 3 2 18 18 C 1.53116 * 109.16137 * 182.40281 * 17 15 3 19 19 C 1.53040 * 109.27895 * 57.65138 * 18 17 15 20 20 N 1.46843 * 109.52351 * 300.82107 * 19 18 17 21 21 C 1.46850 * 111.23166 * 61.72425 * 20 19 18 22 22 H 1.09001 * 109.46903 * 299.62909 * 1 2 3 23 23 H 1.09004 * 109.47404 * 59.63522 * 1 2 3 24 24 H 1.09003 * 109.47165 * 179.63235 * 1 2 3 25 25 H 1.08997 * 109.46877 * 240.00536 * 2 1 3 26 26 H 1.08998 * 109.47401 * 120.00085 * 2 1 3 27 27 H 1.08998 * 109.47486 * 306.04491 * 4 3 2 28 28 H 1.09000 * 109.46887 * 186.04433 * 4 3 2 29 29 H 1.09012 * 109.46959 * 299.99708 * 5 4 3 30 30 H 1.08998 * 109.47442 * 59.99318 * 5 4 3 31 31 H 1.09004 * 109.46348 * 299.99708 * 6 5 4 32 32 H 1.08997 * 109.46993 * 59.99456 * 6 5 4 33 33 H 0.97004 * 119.99677 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.52077 * 302.30709 * 17 15 3 35 35 H 1.09001 * 109.52173 * 62.49589 * 17 15 3 36 36 H 1.09002 * 109.50696 * 177.59505 * 18 17 15 37 37 H 1.09005 * 109.50137 * 297.67289 * 18 17 15 38 38 H 1.09001 * 109.46047 * 60.84114 * 19 18 17 39 39 H 1.08999 * 109.46216 * 180.81150 * 19 18 17 40 40 H 1.00903 * 110.99852 * 185.83489 * 20 19 18 41 41 H 1.08997 * 109.49602 * 178.28055 * 21 20 19 42 42 H 1.08996 * 109.43334 * 58.30948 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6576 2.0713 1.2474 5 6 2.3979 1.4236 2.4192 6 6 2.0204 2.1380 3.7185 7 6 2.7492 1.4996 4.8728 8 1 3.4153 0.6678 4.6972 9 6 2.5663 1.9781 6.1528 10 7 1.7563 2.9919 6.3664 11 14 3.4702 1.1872 7.5836 12 1 4.7748 1.8681 7.7820 13 1 2.6526 1.3147 8.8167 14 1 3.7015 -0.2499 7.2894 15 6 1.5198 2.1201 -1.1695 16 1 0.4424 2.2588 -1.0790 17 6 1.8280 1.3265 -2.4422 18 6 1.3578 2.1269 -3.6599 19 6 2.0494 3.4921 -3.6648 20 7 1.7228 4.2122 -2.4275 21 6 2.2060 3.4859 -1.2462 22 1 -0.3633 0.5081 0.8933 23 1 -0.3634 0.5195 -0.8867 24 1 -0.3633 -1.0277 -0.0066 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.5825 1.9907 1.4076 28 1 1.9368 3.1226 1.1778 29 1 2.1188 0.3722 2.4888 30 1 3.4730 1.5042 2.2589 31 1 2.2993 3.1895 3.6491 32 1 0.9453 2.0570 3.8785 33 1 1.6279 3.3288 7.2670 34 1 2.9019 1.1535 -2.5125 35 1 1.3054 0.3705 -2.4108 36 1 1.6129 1.5864 -4.5714 37 1 0.2778 2.2657 -3.6093 38 1 3.1285 3.3523 -3.7298 39 1 1.7059 4.0701 -4.5227 40 1 2.0891 5.1522 -2.4487 41 1 1.9762 4.0587 -0.3478 42 1 3.2844 3.3467 -1.3220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082500840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:35 Heat of formation + Delta-G solvation = -13.658823 kcal Electronic energy + Delta-G solvation = -17954.159207 eV Core-core repulsion = 15354.178752 eV Total energy + Delta-G solvation = -2599.980455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.52979 -36.77825 -33.76166 -32.14187 -31.23228 -30.79461 -28.42132 -25.99555 -24.35953 -22.94500 -22.78118 -20.98918 -19.65486 -18.95187 -16.93689 -16.22272 -15.64296 -14.98871 -14.66972 -14.51825 -14.33393 -13.83256 -13.71899 -13.20593 -12.73121 -12.67834 -12.57705 -12.26177 -11.66374 -11.57705 -11.52093 -11.20853 -10.97847 -10.87069 -10.72429 -10.56076 -10.48163 -10.36077 -10.05283 -9.48720 -9.26311 -9.00495 -8.54217 -8.30310 -7.92629 -5.95812 -3.97629 3.34645 3.40597 3.44277 3.90206 4.41094 4.51074 4.72113 4.88780 4.89964 5.16233 5.26568 5.34246 5.40021 5.46006 5.49382 5.57629 5.61743 5.68310 5.76417 5.83182 5.89224 5.91154 5.96386 6.02962 6.09565 6.24939 6.30725 6.44586 6.47398 6.76691 6.79647 6.96910 7.18900 7.26612 7.47500 7.51443 7.73498 7.89099 8.05196 8.48815 9.09712 9.66171 11.15653 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039385 B = 0.004537 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.765002 B = 6170.110414 C = 6544.482603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 N -0.534 5.534 4 C 0.050 3.950 5 C -0.104 4.104 6 C 0.022 3.978 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.087 3.913 16 H 0.049 0.951 17 C -0.117 4.117 18 C -0.116 4.116 19 C 0.057 3.943 20 N -0.692 5.692 21 C 0.063 3.937 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.344 0.656 41 H 0.079 0.921 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 -1.511 -19.490 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.081 4.081 3 N -0.258 5.258 4 C -0.077 4.077 5 C -0.141 4.141 6 C -0.016 4.016 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.022 4.022 16 H 0.066 0.934 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.072 4.072 20 N -0.323 5.323 21 C -0.066 4.066 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.161 0.839 41 H 0.097 0.903 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.175 -1.673 -19.338 19.446 hybrid contribution 0.485 -0.144 0.918 1.048 sum -0.690 -1.817 -18.420 18.523 Atomic orbital electron populations 1.22427 0.98616 1.01931 1.02160 1.22193 0.92707 0.90564 1.02644 1.62289 1.59243 1.02067 1.02175 1.22372 0.98174 0.98295 0.88863 1.21641 0.99257 0.99074 0.94176 1.19068 0.96584 0.95597 0.90303 1.21258 1.26103 1.16206 0.91982 0.92728 1.25023 0.95412 0.95118 0.98941 1.69971 1.37003 1.25405 1.21255 0.86613 0.79695 0.79785 0.82027 1.20688 1.21279 1.19897 1.21522 0.97474 0.92789 0.90376 0.93354 1.21720 1.01689 0.98420 0.93642 1.21576 1.01022 0.95055 0.97819 1.21915 0.97559 0.95339 0.92405 1.60196 1.64536 1.05519 1.02095 1.21964 0.97293 0.94471 0.92909 0.91935 0.92826 0.92524 0.91190 0.89986 0.94894 0.91264 0.93470 0.92786 0.96710 0.96878 0.93085 0.91519 0.91600 0.91650 0.91381 0.95268 0.91110 0.83861 0.90315 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 9.07 37.16 0.34 -2.18 16 2 C 0.05 0.65 5.35 -3.83 -0.02 0.63 16 3 N -0.53 -8.12 4.58 -226.55 -1.04 -9.16 16 4 C 0.05 0.89 4.65 -3.83 -0.02 0.87 16 5 C -0.10 -2.20 5.09 -26.73 -0.14 -2.33 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 11 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.09 1.16 1.46 -67.63 -0.10 1.06 16 16 H 0.05 0.71 6.73 -51.92 -0.35 0.36 16 17 C -0.12 -1.31 4.59 -26.61 -0.12 -1.44 16 18 C -0.12 -1.12 6.09 -26.65 -0.16 -1.29 16 19 C 0.06 0.55 6.55 -3.83 -0.03 0.52 16 20 N -0.69 -7.67 6.84 -113.82 -0.78 -8.45 16 21 C 0.06 0.82 5.72 -3.83 -0.02 0.80 16 22 H 0.06 0.93 6.43 -51.93 -0.33 0.59 16 23 H 0.05 0.67 6.11 -51.93 -0.32 0.35 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.86 6.35 -51.93 -0.33 0.53 16 26 H 0.08 1.24 6.24 -51.93 -0.32 0.92 16 27 H 0.03 0.60 6.20 -51.93 -0.32 0.28 16 28 H 0.07 1.24 6.01 -51.93 -0.31 0.93 16 29 H 0.05 0.99 6.45 -51.92 -0.33 0.65 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.71 6.03 -51.93 -0.31 0.40 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.34 3.23 8.90 -39.29 -0.35 2.88 16 41 H 0.08 1.10 6.35 -51.93 -0.33 0.77 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -30.14 312.96 -9.59 -39.73 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.39 Total: -0.55 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.82 Total: -16.61 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -1.08 Total: -44.23 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.14 -9.59 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.069 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds