Wall clock time and date at job start Mon Mar 30 2020 03:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47006 * 2 1 4 4 C 1.46901 * 110.99783 * 65.43888 * 3 2 1 5 5 C 1.52994 * 109.47188 * 66.05147 * 4 3 2 6 6 C 1.53003 * 109.47464 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47363 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99972 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99983 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99929 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99957 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47084 * 90.00000 * 11 9 7 13 13 H 1.48500 * 109.46856 * 209.99902 * 11 9 7 14 14 H 1.48500 * 109.47121 * 329.99849 * 11 9 7 15 15 C 1.46902 * 111.00219 * 301.48540 * 3 2 1 16 16 H 1.09008 * 109.50330 * 68.03306 * 15 3 2 17 17 C 1.53120 * 109.50296 * 307.95576 * 15 3 2 18 18 C 1.53116 * 109.16137 * 182.40281 * 17 15 3 19 19 C 1.53040 * 109.27895 * 57.65138 * 18 17 15 20 20 N 1.46843 * 109.52351 * 300.82107 * 19 18 17 21 21 C 1.46850 * 111.23166 * 61.72425 * 20 19 18 22 22 H 1.09001 * 109.46903 * 299.62909 * 1 2 3 23 23 H 1.09004 * 109.47404 * 59.63522 * 1 2 3 24 24 H 1.09003 * 109.47165 * 179.63235 * 1 2 3 25 25 H 1.08997 * 109.46877 * 240.00536 * 2 1 3 26 26 H 1.08998 * 109.47401 * 120.00085 * 2 1 3 27 27 H 1.08998 * 109.47486 * 306.04491 * 4 3 2 28 28 H 1.09000 * 109.46887 * 186.04433 * 4 3 2 29 29 H 1.09012 * 109.46959 * 299.99708 * 5 4 3 30 30 H 1.08998 * 109.47442 * 59.99318 * 5 4 3 31 31 H 1.09004 * 109.46348 * 299.99708 * 6 5 4 32 32 H 1.08997 * 109.46993 * 59.99456 * 6 5 4 33 33 H 0.97004 * 119.99677 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.52077 * 302.30709 * 17 15 3 35 35 H 1.09001 * 109.52173 * 62.49589 * 17 15 3 36 36 H 1.09002 * 109.50696 * 177.59505 * 18 17 15 37 37 H 1.09005 * 109.50137 * 297.67289 * 18 17 15 38 38 H 1.09001 * 109.46047 * 60.84114 * 19 18 17 39 39 H 1.08999 * 109.46216 * 180.81150 * 19 18 17 40 40 H 1.00903 * 110.99852 * 185.83489 * 20 19 18 41 41 H 1.08997 * 109.49602 * 178.28055 * 21 20 19 42 42 H 1.08996 * 109.43334 * 58.30948 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6576 2.0713 1.2474 5 6 2.3979 1.4236 2.4192 6 6 2.0204 2.1380 3.7185 7 6 2.7492 1.4996 4.8728 8 1 3.4153 0.6678 4.6972 9 6 2.5663 1.9781 6.1528 10 7 1.7563 2.9919 6.3664 11 14 3.4702 1.1872 7.5836 12 1 4.7748 1.8681 7.7820 13 1 2.6526 1.3147 8.8167 14 1 3.7015 -0.2499 7.2894 15 6 1.5198 2.1201 -1.1695 16 1 0.4424 2.2588 -1.0790 17 6 1.8280 1.3265 -2.4422 18 6 1.3578 2.1269 -3.6599 19 6 2.0494 3.4921 -3.6648 20 7 1.7228 4.2122 -2.4275 21 6 2.2060 3.4859 -1.2462 22 1 -0.3633 0.5081 0.8933 23 1 -0.3634 0.5195 -0.8867 24 1 -0.3633 -1.0277 -0.0066 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.5825 1.9907 1.4076 28 1 1.9368 3.1226 1.1778 29 1 2.1188 0.3722 2.4888 30 1 3.4730 1.5042 2.2589 31 1 2.2993 3.1895 3.6491 32 1 0.9453 2.0570 3.8785 33 1 1.6279 3.3288 7.2670 34 1 2.9019 1.1535 -2.5125 35 1 1.3054 0.3705 -2.4108 36 1 1.6129 1.5864 -4.5714 37 1 0.2778 2.2657 -3.6093 38 1 3.1285 3.3523 -3.7298 39 1 1.7059 4.0701 -4.5227 40 1 2.0891 5.1522 -2.4487 41 1 1.9762 4.0587 -0.3478 42 1 3.2844 3.3467 -1.3220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082500840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:35 Heat of formation + Delta-G solvation = -34.297394 kcal Electronic energy + Delta-G solvation = -17955.054163 eV Core-core repulsion = 15354.178752 eV Total energy + Delta-G solvation = -2600.875410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61584 -37.88931 -35.72289 -33.68309 -32.55327 -31.82990 -29.85224 -27.66767 -25.59519 -24.41941 -23.83676 -22.42703 -21.04404 -20.08456 -18.45412 -17.92983 -16.81832 -16.56597 -16.08971 -15.78500 -15.45084 -15.02582 -14.77635 -14.55789 -14.30941 -13.79963 -13.73020 -13.60568 -13.34827 -13.04563 -12.87434 -12.65662 -12.41610 -12.37175 -12.12309 -11.94325 -11.78316 -11.61434 -11.35391 -11.23671 -11.06186 -10.95038 -10.54469 -9.42795 -9.17708 -8.19802 -6.30975 1.39770 1.41454 1.52635 2.41003 2.83147 3.13215 3.44392 3.74950 3.95380 4.02663 4.14569 4.22727 4.31680 4.36787 4.40356 4.44572 4.54620 4.63422 4.67241 4.77973 4.80175 4.86339 4.93925 4.99300 5.01818 5.06850 5.09889 5.15441 5.21504 5.27151 5.35086 5.45011 5.53895 5.74982 5.86145 5.95782 6.17131 6.26196 6.32195 6.47724 6.85761 7.38281 8.92220 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039385 B = 0.004537 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.765002 B = 6170.110414 C = 6544.482603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.045 3.955 3 N -0.537 5.537 4 C 0.063 3.937 5 C -0.087 4.087 6 C 0.027 3.973 7 C -0.542 4.542 8 H 0.059 0.941 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.263 1.263 15 C 0.089 3.911 16 H 0.037 0.963 17 C -0.112 4.112 18 C -0.113 4.113 19 C 0.055 3.945 20 N -0.697 5.697 21 C 0.067 3.933 22 H 0.038 0.962 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.050 0.950 31 H -0.010 1.010 32 H -0.012 1.012 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.089 0.911 40 H 0.352 0.648 41 H 0.061 0.939 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 -2.642 -20.819 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.083 4.083 3 N -0.261 5.261 4 C -0.064 4.064 5 C -0.125 4.125 6 C -0.011 4.011 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.019 4.019 16 H 0.055 0.945 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.074 4.074 20 N -0.330 5.330 21 C -0.063 4.063 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.008 0.992 32 H 0.006 0.994 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.108 0.892 40 H 0.171 0.829 41 H 0.079 0.921 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.567 -2.807 -20.693 20.890 hybrid contribution 0.273 0.239 1.288 1.338 sum -0.295 -2.567 -19.405 19.577 Atomic orbital electron populations 1.22351 0.97911 1.02842 1.01318 1.22261 0.93293 0.89645 1.03060 1.62246 1.59583 1.02746 1.01515 1.22058 0.97093 0.98006 0.89284 1.21374 0.99230 0.98776 0.93079 1.18958 0.94760 0.94652 0.92692 1.21681 1.26549 1.16615 0.93158 0.92310 1.25988 0.96162 0.95560 1.02107 1.70105 1.38357 1.26786 1.22194 0.85442 0.78418 0.79177 0.77988 1.19719 1.20653 1.18725 1.21563 0.96649 0.93217 0.90521 0.94508 1.21695 1.01664 0.98637 0.92962 1.21587 1.00648 0.95031 0.97888 1.22022 0.97796 0.95526 0.92075 1.60199 1.64591 1.06080 1.02088 1.21834 0.96828 0.94357 0.93287 0.94330 0.92019 0.90755 0.88849 0.91424 0.95643 0.91725 0.93140 0.93150 0.99173 0.99354 0.92778 0.91746 0.90831 0.89367 0.91830 0.95064 0.89221 0.82880 0.92092 0.94946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.65 9.07 71.98 0.65 -4.00 16 2 C 0.05 1.20 5.35 86.30 0.46 1.66 16 3 N -0.54 -16.12 4.58 -870.68 -3.99 -20.11 16 4 C 0.06 2.32 4.65 86.30 0.40 2.72 16 5 C -0.09 -3.76 5.09 30.59 0.16 -3.61 16 6 C 0.03 1.48 4.97 29.85 0.15 1.63 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 10 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 11 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 15 C 0.09 2.30 1.46 44.97 0.07 2.37 16 16 H 0.04 1.05 6.73 -2.38 -0.02 1.04 16 17 C -0.11 -2.26 4.59 30.67 0.14 -2.12 16 18 C -0.11 -1.88 6.09 30.65 0.19 -1.69 16 19 C 0.05 0.92 6.55 86.33 0.57 1.48 16 20 N -0.70 -14.60 6.84 -514.01 -3.52 -18.12 16 21 C 0.07 1.71 5.72 86.33 0.49 2.21 16 22 H 0.04 1.14 6.43 -2.39 -0.02 1.13 16 23 H 0.06 1.44 6.11 -2.39 -0.01 1.42 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.09 2.07 6.35 -2.39 -0.02 2.05 16 26 H 0.07 2.00 6.24 -2.39 -0.01 1.99 16 27 H 0.03 0.97 6.20 -2.39 -0.01 0.95 16 28 H 0.06 2.41 6.01 -2.39 -0.01 2.40 16 29 H 0.05 2.14 6.45 -2.38 -0.02 2.12 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 32 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.38 6.03 -2.39 -0.01 1.36 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.35 6.25 8.90 -89.69 -0.80 5.45 16 41 H 0.06 1.76 6.35 -2.39 -0.02 1.74 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -64.99 312.96 -1.04 -66.03 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.19 Total: 13.35 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.97 Total: -30.51 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -7.22 Total: -95.99 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.99 -1.04 -66.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.737 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds