Wall clock time and date at job start Mon Mar 30 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46904 * 109.47012 * 2 1 4 4 C 1.46903 * 110.99722 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46742 * 180.02562 * 4 3 2 6 6 C 1.53125 * 109.52222 * 175.00027 * 5 4 3 7 7 C 1.53033 * 109.28287 * 177.61979 * 6 5 4 8 8 N 1.46851 * 109.52231 * 300.82460 * 7 6 5 9 9 C 1.46898 * 110.99682 * 185.83477 * 8 7 6 10 10 C 1.53006 * 109.47006 * 170.00115 * 9 8 7 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00192 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99770 * 15 13 11 18 18 H 1.48508 * 109.47394 * 329.99535 * 15 13 11 19 19 C 1.46846 * 111.19864 * 61.73920 * 8 7 6 20 20 C 1.53033 * 109.52460 * 298.25500 * 19 8 7 21 21 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46774 * 299.99844 * 1 2 3 23 23 H 1.09002 * 109.47110 * 59.99618 * 1 2 3 24 24 H 1.09000 * 109.46774 * 240.00156 * 2 1 3 25 25 H 1.09000 * 109.46857 * 119.99915 * 2 1 3 26 26 H 1.00895 * 110.99673 * 303.95414 * 3 2 1 27 27 H 1.09004 * 109.47114 * 60.00169 * 4 3 2 28 28 H 1.09000 * 109.47190 * 299.99976 * 4 3 2 29 29 H 1.08994 * 109.52566 * 54.87315 * 5 4 3 30 30 H 1.09005 * 109.50073 * 57.67955 * 6 5 4 31 31 H 1.08991 * 109.50379 * 297.56469 * 6 5 4 32 32 H 1.08989 * 109.46624 * 180.80484 * 7 6 5 33 33 H 1.09002 * 109.45127 * 60.82884 * 7 6 5 34 34 H 1.09001 * 109.47392 * 50.00413 * 9 8 7 35 35 H 1.09001 * 109.47520 * 290.00136 * 9 8 7 36 36 H 1.09001 * 109.47002 * 299.99782 * 10 9 8 37 37 H 1.08993 * 109.46955 * 60.00219 * 10 9 8 38 38 H 0.96996 * 120.00505 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46555 * 58.27646 * 19 8 7 40 40 H 1.09001 * 109.46296 * 178.24247 * 19 8 7 41 41 H 1.08997 * 109.50475 * 299.23909 * 20 19 8 42 42 H 1.09002 * 109.50799 * 179.12007 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9595 2.8798 0.0001 6 6 5.4850 2.9236 0.1252 7 6 5.9553 4.3787 0.0656 8 7 5.5331 4.9792 -1.2063 9 6 6.0851 6.3319 -1.3586 10 6 5.8369 6.8264 -2.7852 11 6 6.4038 8.2139 -2.9417 12 1 6.8919 8.6951 -2.1070 13 6 6.2985 8.8694 -4.1501 14 7 5.7037 8.2836 -5.1663 15 14 7.0005 10.5895 -4.3438 16 1 8.4116 10.5001 -4.7978 17 1 6.2040 11.3390 -5.3483 18 1 6.9441 11.2971 -3.0394 19 6 4.0697 4.9912 -1.3279 20 6 3.5432 3.5544 -1.3100 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6442 1.9012 -0.7813 27 1 3.8648 0.9204 -0.8909 28 1 3.8655 0.9201 0.8891 29 1 3.5097 3.4079 0.8407 30 1 5.9336 2.3623 -0.6945 31 1 5.7849 2.4829 1.0758 32 1 7.0421 4.4125 0.1400 33 1 5.5170 4.9360 0.8935 34 1 7.1572 6.3111 -1.1627 35 1 5.5996 7.0044 -0.6514 36 1 6.3226 6.1540 -3.4924 37 1 4.7650 6.8473 -2.9811 38 1 5.6292 8.7449 -6.0163 39 1 3.6404 5.5458 -0.4935 40 1 3.7871 5.4698 -2.2656 41 1 3.9612 3.0031 -2.1522 42 1 2.4557 3.5643 -1.3845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082645659.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:06 Heat of formation + Delta-G solvation = -23.709604 kcal Electronic energy + Delta-G solvation = -17435.118724 eV Core-core repulsion = 14834.702435 eV Total energy + Delta-G solvation = -2600.416289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.02724 -36.71990 -34.24119 -32.71967 -30.77617 -30.30911 -28.85476 -25.85201 -23.82451 -23.12044 -22.13511 -21.42421 -20.01830 -19.37589 -16.47226 -16.14292 -15.36344 -15.10618 -14.63456 -14.45366 -14.37639 -13.81438 -13.75276 -13.20214 -13.04839 -12.48573 -12.34766 -12.14311 -11.87492 -11.66540 -11.63025 -11.34541 -11.08591 -10.91815 -10.88379 -10.60961 -10.47501 -10.16096 -10.05033 -9.74295 -9.26404 -9.08281 -8.58101 -8.30503 -7.63513 -5.97413 -3.99586 3.33505 3.39506 3.42790 4.01844 4.41313 4.58664 4.79084 4.89957 4.97669 5.04696 5.08288 5.25815 5.38346 5.47946 5.50429 5.54702 5.61927 5.68761 5.72630 5.77778 5.85486 5.93356 6.04379 6.06521 6.13361 6.19300 6.33212 6.34415 6.49350 6.58749 6.63454 6.89747 7.01767 7.22980 7.57699 7.65897 7.85186 7.94500 8.12122 8.46733 9.07776 9.63846 11.13993 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.043536 B = 0.003910 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.989829 B = 7159.074093 C = 7618.269925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.693 5.693 4 C 0.065 3.935 5 C -0.086 4.086 6 C -0.108 4.108 7 C 0.056 3.944 8 N -0.538 5.538 9 C 0.063 3.937 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.056 3.944 20 C -0.111 4.111 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.342 0.658 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.024 0.976 37 H 0.017 0.983 38 H 0.260 0.740 39 H 0.024 0.976 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 -15.017 10.506 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 N -0.325 5.325 4 C -0.064 4.064 5 C -0.105 4.105 6 C -0.146 4.146 7 C -0.073 4.073 8 N -0.263 5.263 9 C -0.064 4.064 10 C -0.009 4.009 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.072 4.072 20 C -0.149 4.149 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.161 0.839 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.474 -15.215 10.630 19.657 hybrid contribution 0.270 1.215 -0.458 1.326 sum -6.203 -14.000 10.172 18.384 Atomic orbital electron populations 1.21774 0.95053 1.01563 1.02483 1.21910 0.95640 0.89833 1.00289 1.60560 1.08366 1.13228 1.50384 1.22002 0.87197 0.96937 1.00241 1.21224 0.95749 0.94741 0.98816 1.21578 0.94771 0.96917 1.01372 1.22024 0.99980 0.94358 0.90924 1.62019 1.09343 1.23037 1.31922 1.22314 0.98071 0.85313 1.00669 1.19095 0.97100 0.95201 0.89518 1.21210 1.37209 1.00703 0.96907 0.92835 1.24992 0.95407 0.97963 0.95979 1.69969 1.43377 1.37720 1.02213 0.86602 0.79037 0.84551 0.77836 1.20656 1.21239 1.19944 1.22065 0.87989 0.95563 1.01588 1.21653 0.99499 0.96540 0.97186 0.92343 0.91848 0.92767 0.95496 0.91269 0.83885 0.95155 0.91358 0.90820 0.91281 0.92137 0.91209 0.95733 0.92200 0.96368 0.95786 0.96491 0.93031 0.95734 0.89628 0.91467 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.17 37.16 0.38 -0.77 16 2 C 0.05 0.46 6.41 -3.82 -0.02 0.44 16 3 N -0.69 -7.16 6.50 -113.77 -0.74 -7.90 16 4 C 0.07 0.70 5.15 -3.82 -0.02 0.68 16 5 C -0.09 -1.05 2.46 -90.49 -0.22 -1.28 16 6 C -0.11 -1.36 5.38 -26.65 -0.14 -1.50 16 7 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 8 N -0.54 -10.03 4.66 -234.67 -1.09 -11.12 16 9 C 0.06 1.37 4.90 -3.82 -0.02 1.35 16 10 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 11 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.06 0.97 5.29 -3.84 -0.02 0.95 16 20 C -0.11 -1.53 5.10 -26.65 -0.14 -1.66 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.34 3.48 7.06 -39.29 -0.28 3.21 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.04 8.01 -51.94 -0.42 0.62 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.28 7.99 -51.93 -0.41 0.87 16 35 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.47 6.43 -51.93 -0.33 0.13 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 1.67 6.21 -51.93 -0.32 1.35 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.76 6.81 -51.93 -0.35 0.40 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -29.92 325.76 -9.98 -39.90 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.00 Total: -2.16 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.78 Total: -14.08 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -1.10 Total: -45.41 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.92 -9.98 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645659.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.194 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds